FFCP PHASE1:Hg19::chr11:124543773..124543782,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=53340|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11210|TSSclassifier=S|UniProt=|association_with_transcript=-23bp_to_ENST00000529498_5end|description=CAGE_peak_2_at_SPA17_5end|id=chr11:124543773..124543782,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000047;2.39e-09;2|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3910;2.39e-09;2|ontology_enrichment_disease_v019_2=DOID:3910,3.38e-09,2|ontology_enrichment_uberon=UBERON:0005743!3.75e-16!86;UBERON:0001017!1.71e-15!82;UBERON:0000073!6.14e-15!94;UBERON:0001016!6.14e-15!94;UBERON:0002780!2.60e-13!41;UBERON:0001890!2.60e-13!41;UBERON:0006240!2.60e-13!41;UBERON:0000955!2.70e-13!69;UBERON:0006238!2.70e-13!69;UBERON:0001049!3.41e-13!57;UBERON:0005068!3.41e-13!57;UBERON:0006241!3.41e-13!57;UBERON:0007135!3.41e-13!57;UBERON:0002346!3.79e-13!90;UBERON:0002616!6.91e-13!59;UBERON:0003080!1.29e-12!42;UBERON:0003075!1.36e-12!86;UBERON:0007284!1.36e-12!86;UBERON:0000033!6.76e-12!123;UBERON:0003056!7.83e-12!61;UBERON:0000153!1.69e-11!129;UBERON:0007811!1.69e-11!129;UBERON:0000924!8.31e-11!173;UBERON:0006601!8.31e-11!173;UBERON:0002020!1.13e-10!34;UBERON:0003528!1.13e-10!34;UBERON:0004121!2.76e-10!169;UBERON:0001893!7.37e-10!34;UBERON:0001869!1.04e-09!32;UBERON:0002791!1.38e-09!33;UBERON:0000956!9.39e-07!25;UBERON:0000203!9.39e-07!25|ontology_enrichment_uberon_v019=UBERON:0004903;2.39e-09;2!UBERON:0002173;2.39e-09;2!UBERON:0002186;2.39e-09;2!UBERON:0002298;5.28e-07;6|ontology_enrichment_uberon_v019_2=UBERON:0004903,3.38e-09,2;UBERON:0002173,3.38e-09,2;UBERON:0002186,3.38e-09,2;UBERON:0001017,3.34e-08,81;UBERON:0000073,1.96e-07,53;UBERON:0002616,1.96e-07,53;UBERON:0002298,3.93e-07,6;UBERON:0001016,4.31e-07,89;UBERON:0001049,6.21e-07,56;UBERON:0005068,6.21e-07,56;UBERON:0006241,6.21e-07,56;UBERON:0007135,6.21e-07,56|phase1_expression=0.181678379270557,0.428201047781966,0.563817616383885,0,0,0.872338524100369,0,0,0,0.737201809504527,0,0.218441372130172,0,0.37129905888014,0,1.34465029290355,0,0,0,0,0,0.313454721478088,0.286235987131057,0.547497700291537,0.125542639594803,0.229240217243854,0.492603536699674,0.314843125254717,0,0,0.154816123316076,0,0,0,0.92960640696362,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0,0,0,0,0.329851300186716,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0.209658645508376,0,0.150176892841506,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0.255725123687061,0,0,0.144846518960824,0,0,0.945348171640679,0.886917589850256,0.263504357079378,3.73290365168481,0,0,0,0,0,0,0,0,0,0,0,0.56530794192401,0.419499436209906,0,0.208994966536811,0.258416759169329,0,0,0,0,0,0,0,0.0892997282840798,0.22452937262617,0.563057402416611,0,0,0,0,0,0.436094052142534,0.496971951695318,0.633152558322899,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,1.1409436430889,0.298897361103602,0,0,0.280901613404497,0.204154171254893,1.22834317311768,0.309977343527296,0,0,0,0,1.17835279767846,0.750711119231785,1.10825646193673,0.438977620880838,0,0.150238058906597,0.453728732640084,0,0,0,0,0.103052529238439,0,0,0.168776332241266,0,0,0.184099797284599,0,0,0,0.169560592310488,0,0.272746120590835,0.860413786167011,0.121973706129595,0,0.116193942869518,0.10366105501537,0.504641701751257,0.36497735907583,0,0.643240938192885,0,0.464367928031979,0,0.118306800039844,0.337169380156203,0.241011029883482,0,0.217879444092406,0.474541238222193,0.269662616320329,0.392442930250692,0.38474715694639,0,0,0,0,0,0,0.590789906681404,0.882926198829301,0.122988438543114,0.343135620597051,0.219500570817251,1.1240175325762,0.301586917234893,0.185176890317059,0.325808305310325,0,0,0.115930404975077,0.234817388471643,0.721832238805369,0.462985512576611,0,0,0,0.492434012174795,0,0.148631162288728,0.93733833986777,0.503946384596579,0.425325291727159,0.0895585227028483,0.290633938513962,0,0,0.088048434013226,0,0,0,0.380987365753014,0,0,0,0,0.300343057843917,0.285826432630578,0,0,0.5867062865676,0,0,0.845302752556,0,0,1.02882949704857,2.83698264046557,0,0.285955987316295,0,0.823240336780769,0.325736184293735,0,0,0.602878754119172,0,0.099972991182057,0,0.502257091432126,0,0.479249710983165,0,0,0,0,0.179060963239896,0,0,0,0,1.52456774533478,1.30139853857622,1.54657762555539,0.670065061337395,0.637938751653163,0,0,0.828831026872071,0.36807447515742,0,0,0.207970861530807,0.356857977594324,0.315404830067869,0.117141414992713,0,0,0,0,0.184369168541703,0.521301686808497,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0.128139149255701,0.511707249066704,0,0,0.616838775210622,0.177561725313127,0.492762936082855,0,0,0,0,0.184161977871793,0,0.364182336013434,0.262248829918848,0.451199612907412,0.308061348417659,0,1.46139224653261,0.211103257785751,0,0,0.647747748306418,0,0.270946437543853,0,1.27438136522519,0.831076008928724,0.22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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=53340 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11210 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-23bp_to_ENST00000529498_5end | |||
|description=CAGE_peak_2_at_SPA17_5end | |||
|id=chr11:124543773..124543782,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000047;2.39e-09;2 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3910;2.39e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3910,3.38e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0005743!3.75e-16!86;UBERON:0001017!1.71e-15!82;UBERON:0000073!6.14e-15!94;UBERON:0001016!6.14e-15!94;UBERON:0002780!2.60e-13!41;UBERON:0001890!2.60e-13!41;UBERON:0006240!2.60e-13!41;UBERON:0000955!2.70e-13!69;UBERON:0006238!2.70e-13!69;UBERON:0001049!3.41e-13!57;UBERON:0005068!3.41e-13!57;UBERON:0006241!3.41e-13!57;UBERON:0007135!3.41e-13!57;UBERON:0002346!3.79e-13!90;UBERON:0002616!6.91e-13!59;UBERON:0003080!1.29e-12!42;UBERON:0003075!1.36e-12!86;UBERON:0007284!1.36e-12!86;UBERON:0000033!6.76e-12!123;UBERON:0003056!7.83e-12!61;UBERON:0000153!1.69e-11!129;UBERON:0007811!1.69e-11!129;UBERON:0000924!8.31e-11!173;UBERON:0006601!8.31e-11!173;UBERON:0002020!1.13e-10!34;UBERON:0003528!1.13e-10!34;UBERON:0004121!2.76e-10!169;UBERON:0001893!7.37e-10!34;UBERON:0001869!1.04e-09!32;UBERON:0002791!1.38e-09!33;UBERON:0000956!9.39e-07!25;UBERON:0000203!9.39e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0004903;2.39e-09;2!UBERON:0002173;2.39e-09;2!UBERON:0002186;2.39e-09;2!UBERON:0002298;5.28e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,3.38e-09,2;UBERON:0002173,3.38e-09,2;UBERON:0002186,3.38e-09,2;UBERON:0001017,3.34e-08,81;UBERON:0000073,1.96e-07,53;UBERON:0002616,1.96e-07,53;UBERON:0002298,3.93e-07,6;UBERON:0001016,4.31e-07,89;UBERON:0001049,6.21e-07,56;UBERON:0005068,6.21e-07,56;UBERON:0006241,6.21e-07,56;UBERON:0007135,6.21e-07,56 | |||
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| |||
|short_description=p2@SPA17 | |||
}} |
Revision as of 16:24, 10 September 2013
Short description: | p2@SPA17 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_SPA17_5end |
Coexpression cluster: | NA |
Association with transcript: | -23bp_to_ENST00000529498_5end |
EntrezGene: | SPA17 |
HGNC: | 11210 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 3.38e-09 | 2 |
alveolar duct | 3.38e-09 | 2 |
bronchiole | 3.38e-09 | 2 |
central nervous system | 3.34e-08 | 81 |
regional part of nervous system | 1.96e-07 | 53 |
regional part of brain | 1.96e-07 | 53 |
brainstem | 3.93e-07 | 6 |
nervous system | 4.31e-07 | 89 |
neural tube | 6.21e-07 | 56 |
neural rod | 6.21e-07 | 56 |
future spinal cord | 6.21e-07 | 56 |
neural keel | 6.21e-07 | 56 |
Ontology term | p-value | n |
---|---|---|
lung adenocarcinoma | 3.38e-09 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.