FFCP PHASE1:Hg19::chr15:63353058..63353095,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7168|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=12010|TSSclassifier=N|UniProt=|association_with_transcript=-337bp_to_ENST00000561242_5end|coexpression_cluster_id=C1041|description=CAGE_peak_10_at_TPM1_5end|id=chr15:63353058..63353095,+|ontology_enrichment_celltype=CL:0000055!1.78e-13!180;CL:0000359!6.92e-10!32;CL:0000192!1.00e-07!42;CL:0000514!1.00e-07!42;CL:0000057!2.41e-07!75;CL:0000077!3.65e-07!19|ontology_enrichment_celltype_v019=CL:0000359;3.50e-11;32|ontology_enrichment_celltype_v019_2=CL:0000359,1.43e-11,32;CL:0000192,6.34e-08,43;CL:0000514,6.34e-08,43|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:2394;5.56e-07;14|ontology_enrichment_disease_v019_2=DOID:2394,2.92e-07,14|ontology_enrichment_uberon=UBERON:0004872!5.84e-09!84;UBERON:0000481!1.44e-08!347;UBERON:0002049!5.80e-08!79;UBERON:0007798!5.80e-08!79;UBERON:0005256!8.42e-08!143;UBERON:0001637!8.99e-08!42;UBERON:0003509!8.99e-08!42;UBERON:0004572!8.99e-08!42;UBERON:0001981!1.82e-07!60;UBERON:0007500!1.82e-07!60;UBERON:0004537!1.82e-07!60;UBERON:0006965!1.82e-07!60;UBERON:0007100!2.05e-07!27;UBERON:0002385!2.31e-07!63;UBERON:0001015!2.31e-07!63;UBERON:0000383!2.31e-07!63;UBERON:0001009!5.10e-07!113;UBERON:0000914!7.25e-07!83;UBERON:0002329!7.25e-07!83;UBERON:0003077!7.25e-07!83;UBERON:0003059!7.25e-07!83;UBERON:0007282!7.25e-07!83;UBERON:0009618!7.25e-07!83;UBERON:0007285!7.25e-07!83;UBERON:0001134!7.47e-07!61;UBERON:0002036!7.47e-07!61;UBERON:0003082!7.47e-07!61;UBERON:0005156!8.02e-07!59;UBERON:0000990!8.02e-07!59;UBERON:0000055!8.51e-07!69;UBERON:0000468!9.18e-07!659|ontology_enrichment_uberon_v019=UBERON:0007100;2.48e-08;25|ontology_enrichment_uberon_v019_2=UBERON:0007100,8.53e-09,27;UBERON:0001637,3.78e-08,42;UBERON:0003509,3.78e-08,42;UBERON:0004572,3.78e-08,42;UBERON:0004872,5.02e-08,83;UBERON:0003104,6.34e-08,160;UBERON:0009142,6.34e-08,160;UBERON:0005256,1.16e-07,122;UBERON:0002385,3.08e-07,64;UBERON:0001015,3.08e-07,64;UBERON:0000383,3.08e-07,64;UBERON:0002049,5.37e-07,78;UBERON:0007798,5.37e-07,78;UBERON:0004573,5.41e-07,33;UBERON:0004571,5.41e-07,33;UBERON:0007500,5.61e-07,59;UBERON:0001981,5.61e-07,59;UBERON:0004537,5.61e-07,59;UBERON:0006965,5.61e-07,59;UBERON:0001134,5.74e-07,62;UBERON:0002036,5.74e-07,62;UBERON:0003082,5.74e-07,62;UBERON:0001009,6.08e-07,112|phase1_expression=2.54349730978779,6.42301571672949,2.39622486963151,5.00366491765652,4.02264984984559,5.23403114460221,0,0,0,0.245733936501509,1.39560233594486,0.218441372130172,1.84636884759917,0.123766352960047,0,11.4295274896802,5.42425075221579,8.03341099426111,4.87932798790507,0.738726348460727,0.408001382488506,0.940364164434263,0.572471974262113,1.09499540058307,2.51085279189606,0,0,0,0,0,0.77408061658038,0,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0.267540828089713,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511450247374121,1.44575660953827,3.00802746381534,2.02785126545153,0.795285947051099,1.94653948121054,2.26883561193763,7.31707011626461,5.88493064143945,0,0,0,0,0,0,0,0,0,0,0,0,0.56530794192401,0.419499436209906,0.825354125820202,0.417989933073621,0.516833518338658,0.71153252537342,0.66944122552934,0,0,0.24406205754817,0,1.62028389576352,0.357198913136319,0.22452937262617,0,0,0.949265659568129,0.183201743930407,0,0,0,11.4303548889923,2.02608818663328,1.05927344650575,1.43418310374407,0.709336764396714,2.80338800071154,7.47242970107935,6.66002380726332,0.311211035399766,0.808264032418128,0.326923806226917,0.302714855289863,0,0,0,0.570471821544449,0.298897361103602,0,0.323745888736263,0.140450806702248,0,0.859840221182376,0.206651562351531,1.18800285728205,1.7308685049499,0,0,0.168336113954066,0.375355559615893,0,2.19488810440419,9.80760946556863,2.25357088359895,1.81491493056034,2.87023417102179,0.427114777637135,1.05965950579781,0.900273288253207,0.721367704669072,1.8034837803194,1.11670113798954,1.18143432568886,4.77441325289873,2.01947019395292,0.828449087780694,0,3.55009592516614,4.13083602733325,1.3564847384839,0.57978255948989,0.272746120590835,0.573609190778008,1.46368447355514,1.06023814657188,0.69716365721711,1.34759371519982,0.756962552626885,0.36497735907583,1.56449532329816,2.57296375277154,1.38134921352481,0.928735856063958,0,0.946454400318751,0.674338760312407,1.20505514941741,0.55146986366197,0.871517776369625,0.71181185733329,0.539325232640658,0,1.53898862778556,0,1.40241773803446,1.6462960453256,1.47008711385542,0,0,0,0,0.122988438543114,1.20097467208968,0.768251997860379,0,0.100528972411631,0,0,0,2.88662684050547,0.695582429850461,1.6437217193015,0.433099343283221,2.31492756288305,0.570762456703795,0,0.858486162094873,0,0,0,0,2.18376766658517,0.567100388969546,0,0.871901815541886,1.15014803749563,0,0,0,0,0,0,0.381988425558278,0,1.710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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7168 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12010 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-337bp_to_ENST00000561242_5end | |||
|coexpression_cluster_id=C1041 | |||
|description=CAGE_peak_10_at_TPM1_5end | |||
|id=chr15:63353058..63353095,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.78e-13!180;CL:0000359!6.92e-10!32;CL:0000192!1.00e-07!42;CL:0000514!1.00e-07!42;CL:0000057!2.41e-07!75;CL:0000077!3.65e-07!19 | |||
|ontology_enrichment_celltype_v019=CL:0000359;3.50e-11;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,1.43e-11,32;CL:0000192,6.34e-08,43;CL:0000514,6.34e-08,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;5.56e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.92e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004872!5.84e-09!84;UBERON:0000481!1.44e-08!347;UBERON:0002049!5.80e-08!79;UBERON:0007798!5.80e-08!79;UBERON:0005256!8.42e-08!143;UBERON:0001637!8.99e-08!42;UBERON:0003509!8.99e-08!42;UBERON:0004572!8.99e-08!42;UBERON:0001981!1.82e-07!60;UBERON:0007500!1.82e-07!60;UBERON:0004537!1.82e-07!60;UBERON:0006965!1.82e-07!60;UBERON:0007100!2.05e-07!27;UBERON:0002385!2.31e-07!63;UBERON:0001015!2.31e-07!63;UBERON:0000383!2.31e-07!63;UBERON:0001009!5.10e-07!113;UBERON:0000914!7.25e-07!83;UBERON:0002329!7.25e-07!83;UBERON:0003077!7.25e-07!83;UBERON:0003059!7.25e-07!83;UBERON:0007282!7.25e-07!83;UBERON:0009618!7.25e-07!83;UBERON:0007285!7.25e-07!83;UBERON:0001134!7.47e-07!61;UBERON:0002036!7.47e-07!61;UBERON:0003082!7.47e-07!61;UBERON:0005156!8.02e-07!59;UBERON:0000990!8.02e-07!59;UBERON:0000055!8.51e-07!69;UBERON:0000468!9.18e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;2.48e-08;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007100,8.53e-09,27;UBERON:0001637,3.78e-08,42;UBERON:0003509,3.78e-08,42;UBERON:0004572,3.78e-08,42;UBERON:0004872,5.02e-08,83;UBERON:0003104,6.34e-08,160;UBERON:0009142,6.34e-08,160;UBERON:0005256,1.16e-07,122;UBERON:0002385,3.08e-07,64;UBERON:0001015,3.08e-07,64;UBERON:0000383,3.08e-07,64;UBERON:0002049,5.37e-07,78;UBERON:0007798,5.37e-07,78;UBERON:0004573,5.41e-07,33;UBERON:0004571,5.41e-07,33;UBERON:0007500,5.61e-07,59;UBERON:0001981,5.61e-07,59;UBERON:0004537,5.61e-07,59;UBERON:0006965,5.61e-07,59;UBERON:0001134,5.74e-07,62;UBERON:0002036,5.74e-07,62;UBERON:0003082,5.74e-07,62;UBERON:0001009,6.08e-07,112 | |||
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| |||
|short_description=p10@TPM1 | |||
}} |
Revision as of 07:45, 11 September 2013
Short description: | p10@TPM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_10_at_TPM1_5end |
Coexpression cluster: | C1041_heart_hepatic_left_mesodermal_smooth_spindle_skeletal |
Association with transcript: | -337bp_to_ENST00000561242_5end |
EntrezGene: | TPM1 |
HGNC: | 12010 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 1.43e-11 | 32 |
smooth muscle cell | 6.34e-08 | 43 |
smooth muscle myoblast | 6.34e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
primary circulatory organ | 8.53e-09 | 27 |
artery | 3.78e-08 | 42 |
arterial blood vessel | 3.78e-08 | 42 |
arterial system | 3.78e-08 | 42 |
splanchnic layer of lateral plate mesoderm | 5.02e-08 | 83 |
mesenchyme | 6.34e-08 | 160 |
entire embryonic mesenchyme | 6.34e-08 | 160 |
trunk mesenchyme | 1.16e-07 | 122 |
muscle tissue | 3.08e-07 | 64 |
musculature | 3.08e-07 | 64 |
musculature of body | 3.08e-07 | 64 |
vasculature | 5.37e-07 | 78 |
vascular system | 5.37e-07 | 78 |
systemic artery | 5.41e-07 | 33 |
systemic arterial system | 5.41e-07 | 33 |
epithelial tube open at both ends | 5.61e-07 | 59 |
blood vessel | 5.61e-07 | 59 |
blood vasculature | 5.61e-07 | 59 |
vascular cord | 5.61e-07 | 59 |
skeletal muscle tissue | 5.74e-07 | 62 |
striated muscle tissue | 5.74e-07 | 62 |
myotome | 5.74e-07 | 62 |
circulatory system | 6.08e-07 | 112 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.92e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.