FFCP PHASE1:Hg19::chr19:46119136..46119150,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C541|description=CAGE_peak_at_chr19:46119136..46119150,-|id=chr19:46119136..46119150,-|ontology_enrichment_celltype=CL:0002139!1.18e-11!24;CL:0002322!2.33e-10!5;CL:0000039!2.59e-10!7;CL:0000586!2.59e-10!7;CL:0000066!1.18e-08!254;CL:0000115!4.75e-08!35;CL:0000071!4.54e-07!18;CL:0002546!4.54e-07!18;CL:0002618!6.01e-07!3;CL:0005020!8.91e-07!6;CL:0002138!8.91e-07!6;CL:0005022!8.91e-07!6|ontology_enrichment_celltype_v019=CL:0002322;1.12e-42;5!CL:0000039;9.73e-32;7!CL:0000586;9.73e-32;7!CL:0002618;1.81e-26;3!CL:0002321;3.26e-14;15!CL:0002543;1.49e-13;6!CL:0000148;2.43e-08;10!CL:0000071;7.30e-08;18|ontology_enrichment_celltype_v019_2=CL:0002322,1.07e-42,5;CL:0000039,7.58e-32,7;CL:0000586,7.58e-32,7;CL:0002618,1.03e-26,3;CL:0002543,1.13e-13,6;CL:0000148,2.34e-08,10;CL:0000541,2.34e-08,10;CL:0000071,7.24e-08,18;CL:0002546,7.24e-08,18;CL:0000540,9.15e-07,6;CL:0000031,9.15e-07,6;CL:0000404,9.15e-07,6|ontology_enrichment_development_v019=UBERON:0009117;5.80e-22;10!UBERON:0005564;5.80e-22;10!CL:0002546;7.30e-08;18|ontology_enrichment_disease=DOID:3095!7.16e-10!22;DOID:2994!7.16e-10!22;DOID:0050687!3.05e-07!143;DOID:305!8.41e-07!106|ontology_enrichment_disease_v019=DOID:3095;7.08e-19;22!DOID:2994;7.08e-19;22!DOID:3908;6.88e-08;5|ontology_enrichment_disease_v019_2=DOID:3095,7.09e-19,22;DOID:2994,7.09e-19,22;DOID:3908,7.25e-08,5|ontology_enrichment_uberon=UBERON:0001986!4.54e-07!18;UBERON:0004638!4.54e-07!18;UBERON:0004852!4.54e-07!18;UBERON:0000487!7.89e-07!22|ontology_enrichment_uberon_v019=UBERON:0000473;4.62e-18;8!UBERON:0002066;3.82e-16;5!UBERON:0003135;3.39e-13;11!UBERON:0000991;2.13e-10;21!UBERON:0000487;1.01e-09;22!UBERON:0001638;3.26e-09;9!UBERON:0010260;3.26e-09;9!UBERON:0003920;3.26e-09;9!UBERON:0004582;3.26e-09;9!UBERON:0000922;1.54e-08;49!UBERON:0006914;1.56e-08;25!UBERON:0004638;7.30e-08;18!UBERON:0001986;7.30e-08;18!UBERON:0004852;7.30e-08;18|ontology_enrichment_uberon_v019_2=UBERON:0000473,3.88e-18,8;UBERON:0002066,2.73e-16,5;UBERON:0003135,2.99e-13,11;UBERON:0000991,2.18e-10,21;UBERON:0009196,2.18e-10,21;UBERON:0009117,2.18e-10,21;UBERON:0005564,2.18e-10,21;UBERON:0004176,6.57e-10,22;UBERON:0000487,1.01e-09,22;UBERON:0001638,2.71e-09,9;UBERON:0010260,2.71e-09,9;UBERON:0003920,2.71e-09,9;UBERON:0004582,2.71e-09,9;UBERON:0006914,1.56e-08,25;UBERON:0004638,7.24e-08,18;UBERON:0001986,7.24e-08,18;UBERON:0004852,7.24e-08,18|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273748850145768,0.251085279189606,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.0654895377488563,0,0,0,0,0,0,0,0,0.39752481473341,0.860234595106124,0,1.13061588384802,0,0.825354125820202,0,0.258416759169329,0.35576626268671,0,0.402829317109147,0,0,0,0,1.51809538082936,2.69435247151404,1.91439516821648,0,0,0.732806975721629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.70296429550139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70763188581434,1.32529768321485,1.39432731443422,1.7622379352613,2.52320850875628,3.28479623168247,0,0,0,0,0,0.118306800039844,0.168584690078102,0,0.110293972732394,0,0,0,0.196221465125346,0.769494313892781,0.738155454624648,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3032332212413,0,0,0,0,0.144366447761074,0.462985512576611,0.190254152234598,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184161977871793,0,0,0,0,0.0770153371044148,0,0,0,0,0.850468526382578,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0.096670718292122,0,0.15350367472613,0,0,0.145016693914229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0.192444225451024,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0.245040215981032,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.2882828526349,15.6015869966838,0,0,0,0.885741385813839,0,0,0,0,0,0,0.139423744278603,0.0769502585037971,0.113942055847001,0.46112780877612,0,5.54101596802241,0,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0,0,0.432777279484182,0.995261931078505,0,0,0,0,0,0,0,0,0,0.782658475728359,0,0,0,0,0,0.60129367765797,0,0,0.661983911750998,0.313932918407225,0,0.569219092059585,0,0,0,0,0,0.687944129886466,0,0,0,0.0969890164884194,0,0,0,0,0,0.391102765469606,0,0,0,0.432271251462318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0.429226048136571,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,1.92903778158023,0.137539436597234,2.07720169014593,0.2249738915515,0,0,0,0.157611414598396,0.262272940674991,1.47840471127169,0,0,0,0,0,0,0,0.326587360109409,0,0,0,0.113312091520126,0,0,0.129282956361551,0,0,0,0.320362237703084,0.157204305099666,0,0,0,0,0,0,0,0,0,0.628216385000937,0,0.122026264901963,0,0,0,0,0.415045904808692,0,0,0,0.235265819698172,0,0.144921028610825,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0,0.521988583930423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.629063767423586,0,0,0,0.247871528518004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781514011233092,0,0,0,0,0,0,0,0,0,0,0.175871244359621,0,0,0,0,0,0.266107110487916,0,0,0,0,0,0.556157009460346,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0.294450700845729,0,0,0,0,0,0.233939463462106,0.198950775161368,0,0,0.439762066981716,0,0.154348316215889,0,0.470317296361523,0,0.235676547101626,0,0,0,0,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13549782351571,1.63898357945543,0,6.83325159271278,1.87052183685892,9.46517465208903,4.76344324655513,0,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr19:46119136..46119150,-}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C541 | |||
|description=CAGE_peak_at_chr19:46119136..46119150,- | |||
|id=chr19:46119136..46119150,- | |||
|ontology_enrichment_celltype=CL:0002139!1.18e-11!24;CL:0002322!2.33e-10!5;CL:0000039!2.59e-10!7;CL:0000586!2.59e-10!7;CL:0000066!1.18e-08!254;CL:0000115!4.75e-08!35;CL:0000071!4.54e-07!18;CL:0002546!4.54e-07!18;CL:0002618!6.01e-07!3;CL:0005020!8.91e-07!6;CL:0002138!8.91e-07!6;CL:0005022!8.91e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002322;1.12e-42;5!CL:0000039;9.73e-32;7!CL:0000586;9.73e-32;7!CL:0002618;1.81e-26;3!CL:0002321;3.26e-14;15!CL:0002543;1.49e-13;6!CL:0000148;2.43e-08;10!CL:0000071;7.30e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.07e-42,5;CL:0000039,7.58e-32,7;CL:0000586,7.58e-32,7;CL:0002618,1.03e-26,3;CL:0002543,1.13e-13,6;CL:0000148,2.34e-08,10;CL:0000541,2.34e-08,10;CL:0000071,7.24e-08,18;CL:0002546,7.24e-08,18;CL:0000540,9.15e-07,6;CL:0000031,9.15e-07,6;CL:0000404,9.15e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0009117;5.80e-22;10!UBERON:0005564;5.80e-22;10!CL:0002546;7.30e-08;18 | |||
|ontology_enrichment_disease=DOID:3095!7.16e-10!22;DOID:2994!7.16e-10!22;DOID:0050687!3.05e-07!143;DOID:305!8.41e-07!106 | |||
|ontology_enrichment_disease_v019=DOID:3095;7.08e-19;22!DOID:2994;7.08e-19;22!DOID:3908;6.88e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,7.09e-19,22;DOID:2994,7.09e-19,22;DOID:3908,7.25e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0001986!4.54e-07!18;UBERON:0004638!4.54e-07!18;UBERON:0004852!4.54e-07!18;UBERON:0000487!7.89e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;4.62e-18;8!UBERON:0002066;3.82e-16;5!UBERON:0003135;3.39e-13;11!UBERON:0000991;2.13e-10;21!UBERON:0000487;1.01e-09;22!UBERON:0001638;3.26e-09;9!UBERON:0010260;3.26e-09;9!UBERON:0003920;3.26e-09;9!UBERON:0004582;3.26e-09;9!UBERON:0000922;1.54e-08;49!UBERON:0006914;1.56e-08;25!UBERON:0004638;7.30e-08;18!UBERON:0001986;7.30e-08;18!UBERON:0004852;7.30e-08;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,3.88e-18,8;UBERON:0002066,2.73e-16,5;UBERON:0003135,2.99e-13,11;UBERON:0000991,2.18e-10,21;UBERON:0009196,2.18e-10,21;UBERON:0009117,2.18e-10,21;UBERON:0005564,2.18e-10,21;UBERON:0004176,6.57e-10,22;UBERON:0000487,1.01e-09,22;UBERON:0001638,2.71e-09,9;UBERON:0010260,2.71e-09,9;UBERON:0003920,2.71e-09,9;UBERON:0004582,2.71e-09,9;UBERON:0006914,1.56e-08,25;UBERON:0004638,7.24e-08,18;UBERON:0001986,7.24e-08,18;UBERON:0004852,7.24e-08,18 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273748850145768,0.251085279189606,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.0654895377488563,0,0,0,0,0,0,0,0,0.39752481473341,0.860234595106124,0,1.13061588384802,0,0.825354125820202,0,0.258416759169329,0.35576626268671,0,0.402829317109147,0,0,0,0,1.51809538082936,2.69435247151404,1.91439516821648,0,0,0.732806975721629,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.70296429550139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70763188581434,1.32529768321485,1.39432731443422,1.7622379352613,2.52320850875628,3.28479623168247,0,0,0,0,0,0.118306800039844,0.168584690078102,0,0.110293972732394,0,0,0,0.196221465125346,0.769494313892781,0.738155454624648,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3032332212413,0,0,0,0,0.144366447761074,0.462985512576611,0.190254152234598,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184161977871793,0,0,0,0,0.0770153371044148,0,0,0,0,0.850468526382578,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0.096670718292122,0,0.15350367472613,0,0,0.145016693914229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0.192444225451024,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0.245040215981032,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.2882828526349,15.6015869966838,0,0,0,0.885741385813839,0,0,0,0,0,0,0.139423744278603,0.0769502585037971,0.113942055847001,0.46112780877612,0,5.54101596802241,0,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0,0,0.432777279484182,0.995261931078505,0,0,0,0,0,0,0,0,0,0.782658475728359,0,0,0,0,0,0.60129367765797,0,0,0.661983911750998,0.313932918407225,0,0.569219092059585,0,0,0,0,0,0.687944129886466,0,0,0,0.0969890164884194,0,0,0,0,0,0.391102765469606,0,0,0,0.432271251462318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0.429226048136571,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,1.92903778158023,0.137539436597234,2.07720169014593,0.2249738915515,0,0,0,0.157611414598396,0.262272940674991,1.47840471127169,0,0,0,0,0,0,0,0.326587360109409,0,0,0,0.113312091520126,0,0,0.129282956361551,0,0,0,0.320362237703084,0.157204305099666,0,0,0,0,0,0,0,0,0,0.628216385000937,0,0.122026264901963,0,0,0,0,0.415045904808692,0,0,0,0.235265819698172,0,0.144921028610825,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0,0.521988583930423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.629063767423586,0,0,0,0.247871528518004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.781514011233092,0,0,0,0,0,0,0,0,0,0,0.175871244359621,0,0,0,0,0,0.266107110487916,0,0,0,0,0,0.556157009460346,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0.294450700845729,0,0,0,0,0,0.233939463462106,0.198950775161368,0,0,0.439762066981716,0,0.154348316215889,0,0.470317296361523,0,0.235676547101626,0,0,0,0,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13549782351571,1.63898357945543,0,6.83325159271278,1.87052183685892,9.46517465208903,4.76344324655513,0,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr19:46119136..46119150,- | |||
}} |
Revision as of 21:19, 11 September 2013
Short description: | p@chr19:46119136..46119150, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:46119136..46119150, - |
Coexpression cluster: | C541_bronchogenic_anaplastic_cervical_Hep2_small_testicular_large |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.07e-42 | 5 |
germ line cell | 7.58e-32 | 7 |
germ cell | 7.58e-32 | 7 |
endothelial cell of umbilical vein | 1.03e-26 | 3 |
vein endothelial cell | 1.13e-13 | 6 |
melanocyte | 2.34e-08 | 10 |
melanoblast | 2.34e-08 | 10 |
blood vessel endothelial cell | 7.24e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 7.24e-08 | 18 |
neuron | 9.15e-07 | 6 |
neuroblast | 9.15e-07 | 6 |
electrically signaling cell | 9.15e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
testis | 3.88e-18 | 8 |
umbilical vein | 2.73e-16 | 5 |
male reproductive organ | 2.99e-13 | 11 |
gonad | 2.18e-10 | 21 |
indifferent external genitalia | 2.18e-10 | 21 |
indifferent gonad | 2.18e-10 | 21 |
gonad primordium | 2.18e-10 | 21 |
external genitalia | 6.57e-10 | 22 |
simple squamous epithelium | 1.01e-09 | 22 |
vein | 2.71e-09 | 9 |
umbilical blood vessel | 2.71e-09 | 9 |
venous blood vessel | 2.71e-09 | 9 |
venous system | 2.71e-09 | 9 |
squamous epithelium | 1.56e-08 | 25 |
blood vessel endothelium | 7.24e-08 | 18 |
endothelium | 7.24e-08 | 18 |
cardiovascular system endothelium | 7.24e-08 | 18 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 7.09e-19 | 22 |
germ cell cancer | 7.09e-19 | 22 |
non-small cell lung carcinoma | 7.25e-08 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.