FFCP PHASE1:Hg19::chr2:74669468..74669481,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6242|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10466|TSSclassifier=S|UniProt=|association_with_transcript=64bp_to_ENST00000484453_5end|coexpression_cluster_id=C55|description=CAGE_peak_18_at_RTKN_5end|id=chr2:74669468..74669481,-|ontology_enrichment_celltype=CL:0000223!5.91e-10!59;CL:0000181!1.11e-08!12;CL:0000417!1.11e-08!12;CL:0000668!1.11e-08!12;CL:0000414!1.11e-08!12;CL:0000412!1.11e-08!12;CL:0000182!1.11e-08!12|ontology_enrichment_celltype_v019=CL:0000182;6.02e-53;12|ontology_enrichment_celltype_v019_2=CL:0000182,5.27e-53,12;CL:0000223,1.28e-11,58|ontology_enrichment_development_v019=UBERON:0004161;8.62e-58;11!UBERON:0009497;4.63e-49;13!UBERON:0001041;8.79e-22;30!UBERON:0003104;7.12e-21;31!CL:0000223;1.93e-07;58|ontology_enrichment_disease=DOID:3119!8.41e-07!14|ontology_enrichment_disease_v019=DOID:7;2.06e-10;39|ontology_enrichment_disease_v019_2=DOID:7,5.37e-10,39|ontology_enrichment_uberon=UBERON:0007499!3.61e-08!25;UBERON:0004921!4.91e-08!129;UBERON:0004185!4.91e-08!129;UBERON:0005911!7.66e-08!82;UBERON:0009856!8.75e-08!26;UBERON:0001007!1.08e-07!155;UBERON:0001555!1.08e-07!155;UBERON:0007026!1.08e-07!155;UBERON:0008835!1.35e-07!22;UBERON:0003894!1.35e-07!22;UBERON:0003929!2.26e-07!54;UBERON:0005172!3.20e-07!55;UBERON:0005173!3.20e-07!55;UBERON:0004119!3.32e-07!169;UBERON:0000925!3.32e-07!169;UBERON:0006595!3.32e-07!169;UBERON:0009854!3.36e-07!23;UBERON:0002107!5.41e-07!19;UBERON:0006925!5.41e-07!19;UBERON:0008836!5.41e-07!19|ontology_enrichment_uberon_v019=UBERON:0002107;3.17e-52;19!UBERON:0006925;3.17e-52;19!UBERON:0002423;6.36e-40;25!UBERON:0002365;4.39e-31;31!UBERON:0002330;4.39e-31;31!UBERON:0002368;1.33e-24;33!UBERON:0000949;1.01e-20;43!UBERON:0005172;1.49e-11;52!UBERON:0005173;1.49e-11;52!UBERON:0002417;3.78e-10;58!UBERON:0000916;3.78e-10;58!UBERON:0002530;1.24e-09;57!UBERON:0001007;1.52e-07;81|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.17e-52,19;UBERON:0006925,3.17e-52,19;UBERON:0008836,3.17e-52,19;UBERON:0008835,3.09e-45,22;UBERON:0003894,3.09e-45,22;UBERON:0009854,2.60e-43,23;UBERON:0007499,6.36e-40,25;UBERON:0009497,6.36e-40,25;UBERON:0000015,6.36e-40,25;UBERON:0002423,6.36e-40,25;UBERON:0006235,6.36e-40,25;UBERON:0004161,6.36e-40,25;UBERON:0009856,2.01e-38,26;UBERON:0002365,2.26e-32,31;UBERON:0002330,2.26e-32,31;UBERON:0002368,9.00e-29,35;UBERON:0000949,1.46e-22,45;UBERON:0003929,6.22e-19,54;UBERON:0005172,6.22e-19,54;UBERON:0005173,6.22e-19,54;UBERON:0002530,2.16e-17,59;UBERON:0002417,4.10e-17,60;UBERON:0000916,4.10e-17,60;UBERON:0005911,1.04e-12,82;UBERON:0001041,5.13e-12,87;UBERON:0005177,1.95e-10,101;UBERON:0009569,1.80e-09,112;UBERON:0003914,4.32e-09,117;UBERON:0004921,6.01e-09,118;UBERON:0005256,9.67e-09,122;UBERON:0001007,2.16e-07,145;UBERON:0001555,2.16e-07,145;UBERON:0007026,2.16e-07,145;UBERON:0000490,2.68e-07,148;UBERON:0001048,8.66e-07,160;UBERON:0003104,8.66e-07,160;UBERON:0009142,8.66e-07,160;UBERON:0004119,9.48e-07,160;UBERON:0000925,9.48e-07,160;UBERON:0006595,9.48e-07,160|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0.6024118375565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0.589405839739707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0,0,0.116193942869518,0,0.252320850875628,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,1.18157981336281,0,0.122988438543114,0,0.439001141634502,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0.846016147141356,0.200506470303285,0,0,0,0,0.451199612907412,0.0770153371044148,0,0,0,0,0,0,0,0,0.501689773854853,0.254876273045038,0,0,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0.260427761085233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23056390438806,0.179515288819544,0,0,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,0,0.163232808159148,0.565412285735763,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144090417154106,0.229073192331831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,2.6786281984456,2.88455504334083,3.100563017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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6242 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10466 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=64bp_to_ENST00000484453_5end | |||
|coexpression_cluster_id=C55 | |||
|description=CAGE_peak_18_at_RTKN_5end | |||
|id=chr2:74669468..74669481,- | |||
|ontology_enrichment_celltype=CL:0000223!5.91e-10!59;CL:0000181!1.11e-08!12;CL:0000417!1.11e-08!12;CL:0000668!1.11e-08!12;CL:0000414!1.11e-08!12;CL:0000412!1.11e-08!12;CL:0000182!1.11e-08!12 | |||
|ontology_enrichment_celltype_v019=CL:0000182;6.02e-53;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,5.27e-53,12;CL:0000223,1.28e-11,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;8.62e-58;11!UBERON:0009497;4.63e-49;13!UBERON:0001041;8.79e-22;30!UBERON:0003104;7.12e-21;31!CL:0000223;1.93e-07;58 | |||
|ontology_enrichment_disease=DOID:3119!8.41e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:7;2.06e-10;39 | |||
|ontology_enrichment_disease_v019_2=DOID:7,5.37e-10,39 | |||
|ontology_enrichment_uberon=UBERON:0007499!3.61e-08!25;UBERON:0004921!4.91e-08!129;UBERON:0004185!4.91e-08!129;UBERON:0005911!7.66e-08!82;UBERON:0009856!8.75e-08!26;UBERON:0001007!1.08e-07!155;UBERON:0001555!1.08e-07!155;UBERON:0007026!1.08e-07!155;UBERON:0008835!1.35e-07!22;UBERON:0003894!1.35e-07!22;UBERON:0003929!2.26e-07!54;UBERON:0005172!3.20e-07!55;UBERON:0005173!3.20e-07!55;UBERON:0004119!3.32e-07!169;UBERON:0000925!3.32e-07!169;UBERON:0006595!3.32e-07!169;UBERON:0009854!3.36e-07!23;UBERON:0002107!5.41e-07!19;UBERON:0006925!5.41e-07!19;UBERON:0008836!5.41e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.17e-52;19!UBERON:0006925;3.17e-52;19!UBERON:0002423;6.36e-40;25!UBERON:0002365;4.39e-31;31!UBERON:0002330;4.39e-31;31!UBERON:0002368;1.33e-24;33!UBERON:0000949;1.01e-20;43!UBERON:0005172;1.49e-11;52!UBERON:0005173;1.49e-11;52!UBERON:0002417;3.78e-10;58!UBERON:0000916;3.78e-10;58!UBERON:0002530;1.24e-09;57!UBERON:0001007;1.52e-07;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.17e-52,19;UBERON:0006925,3.17e-52,19;UBERON:0008836,3.17e-52,19;UBERON:0008835,3.09e-45,22;UBERON:0003894,3.09e-45,22;UBERON:0009854,2.60e-43,23;UBERON:0007499,6.36e-40,25;UBERON:0009497,6.36e-40,25;UBERON:0000015,6.36e-40,25;UBERON:0002423,6.36e-40,25;UBERON:0006235,6.36e-40,25;UBERON:0004161,6.36e-40,25;UBERON:0009856,2.01e-38,26;UBERON:0002365,2.26e-32,31;UBERON:0002330,2.26e-32,31;UBERON:0002368,9.00e-29,35;UBERON:0000949,1.46e-22,45;UBERON:0003929,6.22e-19,54;UBERON:0005172,6.22e-19,54;UBERON:0005173,6.22e-19,54;UBERON:0002530,2.16e-17,59;UBERON:0002417,4.10e-17,60;UBERON:0000916,4.10e-17,60;UBERON:0005911,1.04e-12,82;UBERON:0001041,5.13e-12,87;UBERON:0005177,1.95e-10,101;UBERON:0009569,1.80e-09,112;UBERON:0003914,4.32e-09,117;UBERON:0004921,6.01e-09,118;UBERON:0005256,9.67e-09,122;UBERON:0001007,2.16e-07,145;UBERON:0001555,2.16e-07,145;UBERON:0007026,2.16e-07,145;UBERON:0000490,2.68e-07,148;UBERON:0001048,8.66e-07,160;UBERON:0003104,8.66e-07,160;UBERON:0009142,8.66e-07,160;UBERON:0004119,9.48e-07,160;UBERON:0000925,9.48e-07,160;UBERON:0006595,9.48e-07,160 | |||
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|short_description=p18@RTKN | |||
}} |
Revision as of 19:48, 12 September 2013
Short description: | p18@RTKN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_18_at_RTKN_5end |
Coexpression cluster: | C55_hepatocellular_Intestinal_liver_Prostate_fibrosarcoma_Hepatocyte_hepatoblastoma |
Association with transcript: | 64bp_to_ENST00000484453_5end |
EntrezGene: | RTKN |
HGNC: | 10466 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 5.27e-53 | 12 |
endodermal cell | 1.28e-11 | 58 |
Ontology term | p-value | n |
---|---|---|
disease of anatomical entity | 5.37e-10 | 39 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.