FFCP PHASE1:Hg19::chr4:165675319..165675335,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=100505989|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=36bp_to_ENST00000507311,NR_038834,uc003iqu.1_5end|coexpression_cluster_id=C1048|description=CAGE_peak_1_at_LOC100505989_5end|id=chr4:165675319..165675335,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0001045;1.97e-14;1!UBERON:0006242;1.97e-14;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3493;3.56e-08;2|ontology_enrichment_disease_v019_2=DOID:3493,3.56e-08,2|ontology_enrichment_uberon=UBERON:0004921!1.59e-21!129;UBERON:0004185!1.59e-21!129;UBERON:0001007!2.01e-18!155;UBERON:0001555!2.01e-18!155;UBERON:0007026!2.01e-18!155;UBERON:0004119!2.30e-16!169;UBERON:0000925!2.30e-16!169;UBERON:0006595!2.30e-16!169;UBERON:0000077!6.04e-12!130;UBERON:0003127!6.10e-11!2;UBERON:0002394!1.05e-10!4;UBERON:0003928!1.05e-10!4;UBERON:0002294!1.12e-10!7;UBERON:0001173!1.12e-10!7;UBERON:0004912!1.12e-10!7;UBERON:0000341!1.74e-10!2;UBERON:0008947!2.92e-10!38;UBERON:0003258!2.92e-10!38;UBERON:0000065!5.73e-10!53;UBERON:0000160!9.61e-10!27;UBERON:0001041!1.28e-09!98;UBERON:0001004!1.86e-09!72;UBERON:0007023!5.70e-09!115;UBERON:0005153!1.72e-08!37;UBERON:0005178!1.53e-07!34;UBERON:0002224!1.53e-07!34;UBERON:0005181!2.72e-07!35;UBERON:0005409!2.72e-07!35;UBERON:0002048!6.21e-07!22;UBERON:0000117!6.21e-07!22;UBERON:0000171!6.21e-07!22;UBERON:0000170!6.21e-07!22;UBERON:0005597!6.21e-07!22;UBERON:0000118!6.21e-07!22|ontology_enrichment_uberon_v019=UBERON:0003127;1.07e-27;2!UBERON:0000160;2.12e-26;17!UBERON:0002108;1.20e-24;4!UBERON:0005409;1.27e-20;22!UBERON:0001154;1.97e-14;1!UBERON:0001153;1.97e-14;1!UBERON:0009854;1.97e-14;1!UBERON:0001155;5.29e-14;9!UBERON:0004921;1.30e-12;33!UBERON:0000059;1.44e-11;11!UBERON:0003126;1.32e-08;7!UBERON:0001005;1.32e-08;7!UBERON:0002294;2.19e-08;7!UBERON:0001173;2.19e-08;7!UBERON:0000341;8.60e-08;2!UBERON:0000922;5.15e-07;49|ontology_enrichment_uberon_v019_2=UBERON:0003127,1.07e-27,2;UBERON:0000160,2.08e-26,17;UBERON:0002108,1.11e-24,4;UBERON:0005409,3.18e-18,25;UBERON:0001154,2.11e-14,1;UBERON:0001153,2.11e-14,1;UBERON:0001045,2.11e-14,1;UBERON:0001155,5.40e-14,9;UBERON:0004921,2.98e-12,118;UBERON:0001007,1.03e-11,145;UBERON:0001555,1.03e-11,145;UBERON:0007026,1.03e-11,145;UBERON:0000059,1.47e-11,11;UBERON:0004119,1.74e-10,160;UBERON:0000925,1.74e-10,160;UBERON:0006595,1.74e-10,160;UBERON:0003126,1.32e-08,7;UBERON:0001005,1.32e-08,7;UBERON:0000341,9.19e-08,2;UBERON:0011216,5.32e-07,223|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0.38474715694639,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.597743964753209,2.21027132424918,0,0,0,0,0.0898683511473268,1.25314822272926,0,0.0986434056369336,0,0,0,0,0,0,0.524759999977174,0,0,0.508507300585533,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.63431733775044,13.4426631885398,0,0,0,0,0,0,0,0,0,0,3.62972148145992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34798294213288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.684347351537318,0,0.533937062838473,1.25763444079733,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0.992422356778588,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0.111231401892069,5.0235579424329,0,0,0,0,0,0,0,0,0,0,0,0,0,0.860454717640555,0,0,0,0,0,0,0,0,17.5561811974468,0,0,0,0,0,0,0,0,0,0,11.5761237161917,3.71551252856727,0,0,0.471353094203252,0,0,0,0,0,0,0,0.535661815816973,0,0.0802413666891683,0,0.917458566809082,0,0,0,0,5.81929524566941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0661699095049,0.714193294391221,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=100505989 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=36bp_to_ENST00000507311,NR_038834,uc003iqu.1_5end | |||
|coexpression_cluster_id=C1048 | |||
|description=CAGE_peak_1_at_LOC100505989_5end | |||
|id=chr4:165675319..165675335,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0001045;1.97e-14;1!UBERON:0006242;1.97e-14;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3493;3.56e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,3.56e-08,2 | |||
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|ontology_enrichment_uberon_v019=UBERON:0003127;1.07e-27;2!UBERON:0000160;2.12e-26;17!UBERON:0002108;1.20e-24;4!UBERON:0005409;1.27e-20;22!UBERON:0001154;1.97e-14;1!UBERON:0001153;1.97e-14;1!UBERON:0009854;1.97e-14;1!UBERON:0001155;5.29e-14;9!UBERON:0004921;1.30e-12;33!UBERON:0000059;1.44e-11;11!UBERON:0003126;1.32e-08;7!UBERON:0001005;1.32e-08;7!UBERON:0002294;2.19e-08;7!UBERON:0001173;2.19e-08;7!UBERON:0000341;8.60e-08;2!UBERON:0000922;5.15e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003127,1.07e-27,2;UBERON:0000160,2.08e-26,17;UBERON:0002108,1.11e-24,4;UBERON:0005409,3.18e-18,25;UBERON:0001154,2.11e-14,1;UBERON:0001153,2.11e-14,1;UBERON:0001045,2.11e-14,1;UBERON:0001155,5.40e-14,9;UBERON:0004921,2.98e-12,118;UBERON:0001007,1.03e-11,145;UBERON:0001555,1.03e-11,145;UBERON:0007026,1.03e-11,145;UBERON:0000059,1.47e-11,11;UBERON:0004119,1.74e-10,160;UBERON:0000925,1.74e-10,160;UBERON:0006595,1.74e-10,160;UBERON:0003126,1.32e-08,7;UBERON:0001005,1.32e-08,7;UBERON:0000341,9.19e-08,2;UBERON:0011216,5.32e-07,223 | |||
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|short_description=p1@LOC100505989 | |||
}} |
Revision as of 03:11, 13 September 2013
Short description: | p1@LOC100505989 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LOC100505989_5end |
Coexpression cluster: | C1048_signet_small_colon_duodenum_temporal_trachea_gall |
Association with transcript: | 36bp_to_ENST00000507311, NR_038834, uc003iqu.1_5end |
EntrezGene: | LOC100505989 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
open tracheal system trachea | 1.07e-27 | 2 |
intestine | 2.08e-26 | 17 |
small intestine | 1.11e-24 | 4 |
gastrointestinal system | 3.18e-18 | 25 |
vermiform appendix | 2.11e-14 | 1 |
caecum | 2.11e-14 | 1 |
midgut | 2.11e-14 | 1 |
colon | 5.40e-14 | 9 |
subdivision of digestive tract | 2.98e-12 | 118 |
digestive system | 1.03e-11 | 145 |
digestive tract | 1.03e-11 | 145 |
primitive gut | 1.03e-11 | 145 |
large intestine | 1.47e-11 | 11 |
endoderm-derived structure | 1.74e-10 | 160 |
endoderm | 1.74e-10 | 160 |
presumptive endoderm | 1.74e-10 | 160 |
trachea | 1.32e-08 | 7 |
respiratory airway | 1.32e-08 | 7 |
throat | 9.19e-08 | 2 |
organ system subdivision | 5.32e-07 | 223 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 3.56e-08 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.