FFCP PHASE1:Hg19::chr4:185395672..185395710,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3660|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6117|TSSclassifier=S|UniProt=D6R9N5,D6RB34|association_with_transcript=0bp_to_ENST00000504340,ENST00000505316,ENST00000512020_5end|description=CAGE_peak_1_at_IRF2_5end|id=chr4:185395672..185395710,-|ontology_enrichment_celltype=CL:0000766!8.48e-13!76;CL:0002031!3.24e-12!124;CL:0000738!3.46e-12!140;CL:0002087!7.68e-12!119;CL:0000839!9.07e-12!70;CL:0002194!9.35e-10!63;CL:0000576!9.35e-10!63;CL:0000040!9.35e-10!63;CL:0000559!9.35e-10!63;CL:0000557!1.30e-09!71;CL:0002057!1.85e-09!42;CL:0002009!1.26e-08!65;CL:0000860!1.33e-08!45;CL:0002032!4.20e-08!165;CL:0000837!4.20e-08!165;CL:0000037!2.20e-07!172;CL:0000566!2.20e-07!172|ontology_enrichment_celltype_v019=CL:0000860;1.48e-09;33!CL:0002057;1.48e-09;33!CL:0000473;4.82e-09;39!CL:0000234;4.82e-09;39!CL:0000576;2.96e-07;48|ontology_enrichment_celltype_v019_2=CL:0000766,8.25e-14,72;CL:0002031,7.28e-13,120;CL:0000839,8.88e-13,66;CL:0000738,8.95e-13,136;CL:0002087,1.71e-12,115;CL:0002194,1.09e-10,59;CL:0000576,1.09e-10,59;CL:0000040,1.09e-10,59;CL:0000559,1.09e-10,59;CL:0000473,1.39e-10,48;CL:0000234,1.39e-10,48;CL:0000557,1.90e-10,67;CL:0000860,1.85e-09,42;CL:0002057,1.85e-09,42;CL:0002009,1.93e-09,61;CL:0002032,1.78e-08,161;CL:0000837,1.78e-08,161;CL:0000037,1.01e-07,168|ontology_enrichment_development_v019=CL:0002057;2.17e-07;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!4.27e-32!115;UBERON:0002193!1.55e-15!112;UBERON:0002390!7.01e-15!102;UBERON:0003061!7.01e-15!102;UBERON:0002405!4.81e-12!115;UBERON:0002371!5.34e-09!80;UBERON:0001474!1.16e-07!86;UBERON:0004765!3.36e-07!101;UBERON:0001434!3.36e-07!101;UBERON:0001049!9.63e-07!57;UBERON:0005068!9.63e-07!57;UBERON:0006241!9.63e-07!57;UBERON:0007135!9.63e-07!57|ontology_enrichment_uberon_v019=UBERON:0007023;1.36e-08;114|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.13e-31,114;UBERON:0002193,2.14e-16,108;UBERON:0002390,8.89e-16,98;UBERON:0003061,8.89e-16,98;UBERON:0002405,6.10e-13,93;UBERON:0002371,1.03e-09,76;UBERON:0004765,2.14e-08,90;UBERON:0001474,3.01e-08,82;UBERON:0001434,4.10e-08,100|phase1_expression=25.798329856419,17.1280419112787,25.6537015454667,23.01685862122,18.3254048715188,19.1914475302081,7.59899634504932,24.6370750636464,31.0810897557808,15.2355040630935,8.37361401566913,15.0724546769819,12.6608149549658,57.1800550675415,39.7676850873499,15.4634783683908,16.8754467846714,18.2577522596843,14.6379839637152,20.31497458267,10.4040352534569,20.6880116175538,30.054778648761,16.6986798588919,18.454768020436,29.4191612129612,28.5710051285811,22.9835481435943,20.454942396143,16.1208347200829,18.268302551297,10.1136334692682,15.0602959389125,15.5296684270051,8.44392486325288,17.6289848284403,24.956037343462,12.1878989877013,10.8294001633877,12.1526087600877,90.9096825414093,92.9574821474471,83.1969083458423,76.479473598051,60.8380269338983,40.2689541571775,62.0585528538178,50.5736502266846,25.7056287842936,60.7030947799737,49.4390163601164,35.2358522533992,59.2962570866984,36.7926269642781,16.251178391321,62.3082143886022,56.4915730619741,28.5398825245257,72.235798599533,45.5719218448053,31.327519164153,85.7613380485462,64.6262250694087,43.0486998038021,52.8180814304023,34.6104987061595,21.7987787148451,66.0783989625235,43.8045651472969,32.5783267057675,99.2855184318725,43.0884834105451,34.4944002310564,38.0259515361495,36.5679395939875,29.3522103711726,48.1889827618464,37.9947538889011,51.7536389164598,44.4619880236348,59.4760864825279,45.8487025949231,47.5189860045571,47.5140591798054,61.3761385165853,37.5522595858526,54.4538542368977,52.8772244758125,49.5783654588647,40.0702576904853,26.1837965790346,11.1575065980478,16.8200220375101,11.8954195721123,6.72610275577843,19.2270381885806,27.145948275709,9.82526906872912,18.9153379079548,40.1247588937627,34.221837996527,39.2961678759829,33.1205438293449,49.9118846845578,32.1120439147573,33.0085502929595,49.8279109327629,47.3937882984998,47.4716618593556,35.3541494897904,25.4242016362981,35.9355826311465,61.242350585931,40.3986650415467,35.5420780936921,40.1115073149384,36.4059468921825,40.2044111214677,45.290524871491,56.7046437496892,50.1334259469442,53.225314489109,67.4576533468422,80.8875382495924,62.4653632761729,69.849289352985,55.8367037906312,20.5638878089227,10.6976078313403,16.3651576387563,24.3806866313962,28.1694361075527,30.4312897187602,29.999449647919,30.5816125487893,30.7074620196946,27.0397221997374,19.9520296824081,21.6484731305715,9.97782288581538,12.8238787111964,36.7396306771084,23.6791937390152,19.6515754675748,43.4893507497276,57.2886835714589,41.8817575634425,4.5313218618015,2.85997455390064,2.22874500797739,24.0502512913713,12.0432843314857,21.5227110996708,9.61023501270816,16.3604780121863,17.0573186002842,16.510602356408,31.2684278594888,35.9323925313577,42.8442384338778,34.6433212713866,14.4451700086517,18.5487163736609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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3660 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6117 | |||
|TSSclassifier=S | |||
|UniProt=D6R9N5,D6RB34 | |||
|association_with_transcript=0bp_to_ENST00000504340,ENST00000505316,ENST00000512020_5end | |||
|description=CAGE_peak_1_at_IRF2_5end | |||
|id=chr4:185395672..185395710,- | |||
|ontology_enrichment_celltype=CL:0000766!8.48e-13!76;CL:0002031!3.24e-12!124;CL:0000738!3.46e-12!140;CL:0002087!7.68e-12!119;CL:0000839!9.07e-12!70;CL:0002194!9.35e-10!63;CL:0000576!9.35e-10!63;CL:0000040!9.35e-10!63;CL:0000559!9.35e-10!63;CL:0000557!1.30e-09!71;CL:0002057!1.85e-09!42;CL:0002009!1.26e-08!65;CL:0000860!1.33e-08!45;CL:0002032!4.20e-08!165;CL:0000837!4.20e-08!165;CL:0000037!2.20e-07!172;CL:0000566!2.20e-07!172 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.48e-09;33!CL:0002057;1.48e-09;33!CL:0000473;4.82e-09;39!CL:0000234;4.82e-09;39!CL:0000576;2.96e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,8.25e-14,72;CL:0002031,7.28e-13,120;CL:0000839,8.88e-13,66;CL:0000738,8.95e-13,136;CL:0002087,1.71e-12,115;CL:0002194,1.09e-10,59;CL:0000576,1.09e-10,59;CL:0000040,1.09e-10,59;CL:0000559,1.09e-10,59;CL:0000473,1.39e-10,48;CL:0000234,1.39e-10,48;CL:0000557,1.90e-10,67;CL:0000860,1.85e-09,42;CL:0002057,1.85e-09,42;CL:0002009,1.93e-09,61;CL:0002032,1.78e-08,161;CL:0000837,1.78e-08,161;CL:0000037,1.01e-07,168 | |||
|ontology_enrichment_development_v019=CL:0002057;2.17e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.27e-32!115;UBERON:0002193!1.55e-15!112;UBERON:0002390!7.01e-15!102;UBERON:0003061!7.01e-15!102;UBERON:0002405!4.81e-12!115;UBERON:0002371!5.34e-09!80;UBERON:0001474!1.16e-07!86;UBERON:0004765!3.36e-07!101;UBERON:0001434!3.36e-07!101;UBERON:0001049!9.63e-07!57;UBERON:0005068!9.63e-07!57;UBERON:0006241!9.63e-07!57;UBERON:0007135!9.63e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.36e-08;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.13e-31,114;UBERON:0002193,2.14e-16,108;UBERON:0002390,8.89e-16,98;UBERON:0003061,8.89e-16,98;UBERON:0002405,6.10e-13,93;UBERON:0002371,1.03e-09,76;UBERON:0004765,2.14e-08,90;UBERON:0001474,3.01e-08,82;UBERON:0001434,4.10e-08,100 | |||
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| |||
|short_description=p1@IRF2 | |||
}} |
Revision as of 10:14, 13 September 2013
Short description: | p1@IRF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_IRF2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000504340, ENST00000505316, ENST00000512020_5end |
EntrezGene: | IRF2 |
HGNC: | 6117 |
UniProt: | D6R9N5D6RB34 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 8.25e-14 | 72 |
hematopoietic lineage restricted progenitor cell | 7.28e-13 | 120 |
myeloid lineage restricted progenitor cell | 8.88e-13 | 66 |
leukocyte | 8.95e-13 | 136 |
nongranular leukocyte | 1.71e-12 | 115 |
monopoietic cell | 1.09e-10 | 59 |
monocyte | 1.09e-10 | 59 |
monoblast | 1.09e-10 | 59 |
promonocyte | 1.09e-10 | 59 |
defensive cell | 1.39e-10 | 48 |
phagocyte | 1.39e-10 | 48 |
granulocyte monocyte progenitor cell | 1.90e-10 | 67 |
classical monocyte | 1.85e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.85e-09 | 42 |
macrophage dendritic cell progenitor | 1.93e-09 | 61 |
hematopoietic oligopotent progenitor cell | 1.78e-08 | 161 |
hematopoietic multipotent progenitor cell | 1.78e-08 | 161 |
hematopoietic stem cell | 1.01e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.13e-31 | 114 |
hemolymphoid system | 2.14e-16 | 108 |
hematopoietic system | 8.89e-16 | 98 |
blood island | 8.89e-16 | 98 |
immune system | 6.10e-13 | 93 |
bone marrow | 1.03e-09 | 76 |
skeletal element | 2.14e-08 | 90 |
bone element | 3.01e-08 | 82 |
skeletal system | 4.10e-08 | 100 |
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