FFCP PHASE1:Hg19::chr12:51664289..51664301,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=57228 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26918 | |||
|TSSclassifier=strong | |||
|UniProt=Q0VAQ4 | |||
|association_with_transcript=-87bp_to_ENST00000380103,NM_001031628,uc001rye.1,uc001ryf.1_5end | |||
|coexpression_cluster_id=C45 | |||
|description=CAGE_peak_13_at_SMAGP_5end | |||
|id=chr12:51664289..51664301,- | |||
|ontology_enrichment_celltype=CL:0000039!3.29e-11!7;CL:0000586!3.29e-11!7;CL:0000071!3.89e-07!18;CL:0002546!3.89e-07!18;CL:0002139!7.26e-07!24;CL:0000066!9.92e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0000039;9.95e-46;7!CL:0000586;9.95e-46;7!CL:0000346;6.56e-08;3!CL:1000428;6.56e-08;3!CL:0002592;6.56e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,7.92e-46,7;CL:0000586,7.92e-46,7;CL:0002592,5.93e-08,3;CL:0000346,6.34e-08,3;CL:1000428,6.34e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.39e-32;10!UBERON:0005564;3.39e-32;10 | |||
|ontology_enrichment_disease=DOID:3095!7.54e-08!22;DOID:2994!7.54e-08!22 | |||
|ontology_enrichment_disease_v019=DOID:1799;4.66e-21;1!DOID:10165;4.66e-21;1!DOID:1798;4.66e-21;1!DOID:3095;6.66e-15;22!DOID:2994;6.66e-15;22 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,7.72e-21,1;DOID:10165,7.72e-21,1;DOID:1798,7.72e-21,1;DOID:3095,6.20e-15,22;DOID:2994,6.20e-15,22 | |||
|ontology_enrichment_uberon=UBERON:0001981!1.80e-09!60;UBERON:0007500!1.80e-09!60;UBERON:0004537!1.80e-09!60;UBERON:0006965!1.80e-09!60;UBERON:0000055!7.19e-09!69;UBERON:0004872!2.56e-08!84;UBERON:0003914!1.62e-07!118;UBERON:0002049!1.88e-07!79;UBERON:0007798!1.88e-07!79;UBERON:0001986!3.89e-07!18;UBERON:0004638!3.89e-07!18;UBERON:0004852!3.89e-07!18;UBERON:0001637!8.38e-07!42;UBERON:0003509!8.38e-07!42;UBERON:0004572!8.38e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;4.29e-40;8!UBERON:0003135;2.54e-29;11!UBERON:0000991;1.36e-15;21!UBERON:0003101;6.66e-15;22!UBERON:0000079;6.66e-15;22!UBERON:0002323;3.05e-13;45!UBERON:0001264;7.07e-09;10!UBERON:0004458;7.26e-09;48!UBERON:0000922;4.57e-08;49!UBERON:0003498;6.56e-08;3!UBERON:0005985;6.56e-08;3!UBERON:0000412;6.56e-08;3!UBERON:0001621;6.56e-08;3!UBERON:0001992;6.56e-08;3!UBERON:0002553;7.99e-08;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,3.52e-40,8;UBERON:0003135,2.20e-29,11;UBERON:0000991,1.26e-15,21;UBERON:0009196,1.26e-15,21;UBERON:0009117,1.26e-15,21;UBERON:0005564,1.26e-15,21;UBERON:0002323,1.84e-15,46;UBERON:0004176,6.20e-15,22;UBERON:0003101,6.20e-15,22;UBERON:0000079,6.20e-15,22;UBERON:0004458,1.63e-14,49;UBERON:0003886,3.64e-13,54;UBERON:0002553,1.20e-11,61;UBERON:0001264,8.96e-09,10;UBERON:0001621,5.93e-08,3;UBERON:0000412,6.34e-08,3;UBERON:0001992,6.34e-08,3;UBERON:0003133,5.05e-07,48 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602694528023977,0,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0.12786256184353,0,0,0,0,0.486634870302636,0,0,0,0,0.364295288292542,0,0,0,0,0,0,0,0.596287222100115,0.860234595106124,0,0,1.67799774483962,0.275118041940067,0.835979866147242,0,0,0,0,0,0.24406205754817,0.367663080345869,0,0.17859945656816,0.22452937262617,0.337834441449967,0,0,0.183201743930407,0,0,0,0,0.25326102332916,0,0,0.354668382198357,0,0,0.24666754841716,0,0.269421344139376,0,0,0,0.468642863667593,0,0,0.149448680551801,0,0.161872944368132,0.421352420106746,0,0.368502951935304,0.206651562351531,0,0,0,0,0.336672227908132,0.125118519871964,0.554128230968366,0,0,0,0.226864366320042,0,0,0,0.600182192168805,0,0.257640540045629,0,0.168776332241266,0.0974370051611986,0,0,0,0,0.10075209822764,0.169560592310488,0,0.272746120590835,0,0.243947412259191,0,0.232387885739037,0.10366105501537,0.252320850875628,0,0,0,1.38134921352481,0,0,0,0,0,0.220587945464788,0,0,0,0.196221465125346,0,0.738155454624648,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0.201057944823262,0,0,0,0,0,0.117408694235822,0.288732895522148,0.462985512576611,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0.102827492703324,0,0,0.112131084345361,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0.511707249066704,0,0,0,0,0,0,0.116210378459959,0.120859449591622,0,0,0,0.182091168006717,0,0.451199612907412,0.0770153371044148,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0.137836572484531,0,0,0.0852266274161009,0,0.330569830721956,0,0.255225424989168,0,0.929691098594572,0.62962469366128,0.6970372701606,0,0,0,0.37064843820784,0,0,0,0,0.255897791311334,0,0,0,0,0,0,0,1.58510321173008,0.421258456238981,0,0,0,0,0,0,0,1.32687795048244,0,0,0,0,0,0,0.286822704408103,0.0982490410131212,0.35667105148125,0,0,0,0,0.349934720244983,0,0.670302275535787,0,0.0941438007767792,0.86101074534246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.338583555603207,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0.121360521749513,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0.174919999992391,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0.0769502585037971,0.113942055847001,0.69169171316418,0.448788222048861,0.869178975376065,0.31900115973192,0.183195186803725,0.533034776018635,0,0.156980256395025,0,0.225595660617181,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0.126373159256976,0.150323419414493,0.103688191397247,0,0,0,1.19472429772959,0,0,0,0,0.435296032902013,0.17472666824203,0,0.290268993867255,0.0730893170861856,0.246346371159628,0.0969890164884194,0,0,0,0,0,0.195551382734803,0.240476460754601,0.213452994739353,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0.399358000997982,0,0,0,0,0,0,0,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0.211200673038813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0.573409195690071,0.110929051536852,0,0,0,0,0,0.470531639396343,0,0,0,0,0,0,0,0,0,0,0,0,0.318593534327405,0,0,0,0,0,0,0,0.406870733204662,0,0.214821114084977,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0.353378291891762,0,0,0,0,0,0,0,0,0,0,0,0.633936370075881,0,0,0,0,0.184105950251841,0,0,0.127894371303652,0,0.314531883711793,0.109209638192014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0,0.690359926060101,0,0,0,0,1.30953347240711,0.163771917510097,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354809480650555,0,0,0,0,0,0.444925607568277,0,0,0,0,0,0,0,0,0,0,0.801711364730253,0,0,0,0.430227358820278,0.118332000730565,0,0,0,0.31020638566432,0,0,0.294450700845729,0,0,0,0,0,0,0,0,0.22589216407792,0,0,0,0,0,0,0,0,0.297046400327086,0,0.339854229375634,0.281951753939561,0.128915775947154,0,0,0,0.160482733378337,0,0,0,0,0,0,0,0,0,0,0.126166424835079,0.109265571963696,0,1.32585478664576,2.40495664739004,6.89211746511337,1.75495277504663,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0,0,0.0814032686109745,0,0,0.0898252021065869,0,0,0,0,0,0 | |||
|short_description=p13@SMAGP | |||
}} |
Revision as of 13:28, 11 January 2014
Short description: | p13@SMAGP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_SMAGP_5end |
Coexpression cluster: | C45_testicular_choriocarcinoma_H9_teratocarcinoma_Wilms_pancreatic_iPS |
Association with transcript: | -87bp_to_ENST00000380103, NM_001031628, uc001rye.1, uc001ryf.1_5end |
EntrezGene: | SMAGP |
HGNC: | 26918 |
UniProt: | Q0VAQ4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 7.92e-46 | 7 |
germ cell | 7.92e-46 | 7 |
smooth muscle cell of the coronary artery | 5.93e-08 | 3 |
hair follicle dermal papilla cell | 6.34e-08 | 3 |
stem cell of epidermis | 6.34e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
testis | 3.52e-40 | 8 |
male reproductive organ | 2.20e-29 | 11 |
gonad | 1.26e-15 | 21 |
indifferent external genitalia | 1.26e-15 | 21 |
indifferent gonad | 1.26e-15 | 21 |
gonad primordium | 1.26e-15 | 21 |
body cavity | 1.84e-15 | 46 |
external genitalia | 6.20e-15 | 22 |
male organism | 6.20e-15 | 22 |
male reproductive system | 6.20e-15 | 22 |
body cavity or lining | 1.63e-14 | 49 |
body cavity precursor | 3.64e-13 | 54 |
anatomical cavity | 1.20e-11 | 61 |
pancreas | 8.96e-09 | 10 |
coronary artery | 5.93e-08 | 3 |
dermal papilla | 6.34e-08 | 3 |
papillary layer of dermis | 6.34e-08 | 3 |
reproductive organ | 5.05e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 7.72e-21 | 1 |
endocrine pancreas cancer | 7.72e-21 | 1 |
pancreatic endocrine carcinoma | 7.72e-21 | 1 |
germ cell and embryonal cancer | 6.20e-15 | 22 |
germ cell cancer | 6.20e-15 | 22 |