FFCP PHASE1:Hg19::chr12:52541101..52541122,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr12:52541101..52541122,- | |||
|id=chr12:52541101..52541122,- | |||
|ontology_enrichment_celltype=CL:0000066!4.81e-29!254;CL:0002076!8.92e-13!43;CL:0000076!1.95e-12!62;CL:0000223!4.14e-10!59;CL:0000063!4.98e-08!578 | |||
|ontology_enrichment_celltype_v019=CL:0000307;1.27e-08;3!CL:0002577;4.14e-08;3!CL:0002202;5.50e-07;9!CL:0002632;5.50e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,9.67e-25,253;CL:0000076,7.04e-09,63;CL:0000068,1.31e-08,3;CL:0000069,1.31e-08,3;CL:0000307,1.31e-08,3;CL:0000377,1.31e-08,3;CL:0002577,1.69e-08,3;CL:0002076,1.90e-07,42;CL:0002202,6.86e-07,9;CL:0002632,6.86e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.77e-10;29!CL:0000377;1.27e-08;3 | |||
|ontology_enrichment_disease=DOID:305!3.51e-21!106;DOID:0050687!4.46e-12!143;DOID:1749!1.92e-10!14;DOID:299!3.76e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.42e-17;14!DOID:305;3.62e-09;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,9.89e-28,106;DOID:0050687,3.25e-20,143;DOID:1749,1.81e-17,14;DOID:162,1.67e-12,235;DOID:14566,5.32e-12,239 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.89e-17!169;UBERON:0000925!4.89e-17!169;UBERON:0006595!4.89e-17!169;UBERON:0008947!3.22e-14!38;UBERON:0003258!3.22e-14!38;UBERON:0000065!6.90e-14!53;UBERON:0001004!1.54e-13!72;UBERON:0000077!8.31e-13!130;UBERON:0001007!7.93e-12!155;UBERON:0001555!7.93e-12!155;UBERON:0007026!7.93e-12!155;UBERON:0000072!8.45e-11!46;UBERON:0004921!3.06e-10!129;UBERON:0004185!3.06e-10!129;UBERON:0001737!4.05e-09!9;UBERON:0001041!4.53e-09!98;UBERON:0000062!9.32e-09!511;UBERON:0005178!2.52e-07!34;UBERON:0002224!2.52e-07!34;UBERON:0000468!2.84e-07!659;UBERON:0005631!3.51e-07!14;UBERON:0000158!3.51e-07!14;UBERON:0000915!4.17e-07!52;UBERON:0005181!6.49e-07!35;UBERON:0000467!8.31e-07!625 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;7.56e-18;9!UBERON:0001557;7.56e-18;9!UBERON:0000072;1.18e-14;37!UBERON:0000065;1.97e-12;44!UBERON:0005910;3.88e-10;6!UBERON:0001004;8.12e-09;65!UBERON:0000365;5.80e-08;5!UBERON:0000974;5.41e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,5.27e-18,9;UBERON:0008947,1.08e-15,38;UBERON:0003258,1.08e-15,38;UBERON:0000072,1.90e-13,47;UBERON:0004119,5.68e-13,160;UBERON:0000925,5.68e-13,160;UBERON:0006595,5.68e-13,160;UBERON:0000065,1.15e-12,54;UBERON:0001004,3.16e-11,74;UBERON:0005910,4.41e-10,6;UBERON:0001557,9.85e-10,19;UBERON:0003124,8.75e-09,7;UBERON:0004921,1.45e-08,118;UBERON:0001007,5.74e-08,145;UBERON:0001555,5.74e-08,145;UBERON:0007026,5.74e-08,145;UBERON:0000365,7.25e-08,5;UBERON:0005631,7.52e-08,14;UBERON:0000158,7.52e-08,14;UBERON:0001041,1.28e-07,87 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0.491467873003018,0,0.436882744260345,0.263766978228454,0,0.331397375727916,0,0,0,0,0,0,0,0,0.410623275218653,0.251085279189606,0,0,0,0,0,0.309632246632152,0.919421224478927,1.204823675113,2.21852406100073,0,0,0,0,0.200544447470142,0.217010870715852,0,0,0,0.145398238779565,0.377875943688809,0.242584061187816,0.232429036905685,0,0.309706370895104,0,0,0.709446689665756,0,0,0,0.188242339542605,0.272906150057846,0.449446968890169,0,0,0,0,0,0,0.290209238628584,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.175669571386252,0,0.728590576585084,1.11235332835329,0,0,0,0,0,0,0,0.860234595106124,0,0,0.419499436209906,0,0.835979866147242,0,0,0,0.402829317109147,0.760272105718513,0,0.367663080345869,0,0.0892997282840798,0,0,0,0.949265659568129,0.549605231791222,0,0,0.436094052142534,0,0.12663051166458,0.662045904066094,1.43418310374407,0,0,0,0.24666754841716,0,0,0.163461903113459,0,0,0.468642863667593,0,0,0,0,0,0.140450806702248,0,0.245668634623536,0,0,0,0,0,0,0.250237039743928,0.277064115484183,0,0,0,0.226864366320042,1.79389635688862,0.213557388818567,0.211931901159562,0.600182192168805,0.103052529238439,0.772921620136887,0,0.843881661206331,0.389748020644795,1.51460264546469,0.184099797284599,0,0.355009592516614,0.10075209822764,0.169560592310488,0.57978255948989,0.545492241181669,0,0,0,0,0,0,0,0,0,0,0,0,2.48444280083672,2.69735504124963,2.41011029883482,2.75734931830985,3.05031221729369,4.50814176311084,1.75280700608214,3.13954344200554,0.769494313892781,0,0,0.8231480226628,0,0,0,0,0,0.122988438543114,0,0.219500570817251,2.24803506515239,2.11110842064425,0.462942225792648,0,0,0,0,0.117408694235822,0,0,0,3.1608175918371,4.29243081047436,0,0,0,0,0.16798212819886,0.283550194484773,0.358234090811393,0,1.15014803749563,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0.479249710983165,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0.368738337083406,0,0,0,0,0,0,1.81876542867756,3.32870879020994,1.81434175997808,0,1.07423381301644,0.280660094433074,0.128139149255701,0,0,0,0,0,0,0,0.116210378459959,0,0.40101294060657,0.184161977871793,0.114814448164607,0,0,0,0.0770153371044148,0,0,0.316654886678627,0,0,0,0,0,0,0,0.831076008928724,0.223874754722178,0,0,0.256450125116389,0.984043937099117,0.976135183992909,0.103041011647722,0.27470839445503,0.082509499920588,0,0,0,0,0,0,0.137836572484531,0.107420244868274,0,0.0852266274161009,0.0890320356467374,0.165284915360978,0.384380134730212,4.72167036229961,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318203247925937,0,0,0.274537029736055,0.117812402345686,0.404364963146632,0,0,0,0,0,0,0,0,0.551365343546124,0.66343897524122,0,0,0,0,0.6196469961995,0,0,0,0,0.354761064070598,0,0.329294892959902,0,0,1.63577591633371,2.01090682660736,7.62236894029258,0,1.29151611801369,1.68471475667626,2.21715076768338,0.689170200620878,0,0,0,0,0,0,0,0,0,0.962479855263359,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.05279459102193,0,0,0.111443384277478,0,1.19372242368845,0.593929361665277,3.37876772309155,0,0,0.111308705022906,0,0.422250816255987,0.398495976502139,0,0,0.306806047506464,0,0,1.43789361835723,0.895105873378046,0,2.56472854656027,0,0,0,0,0,0.260427761085233,0,0,0,0,0.472775363535873,0,0,0,0,0,0,0,0,0.219385397153973,0,2.64905114129346,0.461701551022782,0,0,0,0,1.27600463892768,0.366390373607449,1.5991043280559,0,0,0,0,0,0,0,0,0,1.63232808159148,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,4.69595085437015,0.485560759068186,0,0,0,0,0,0,0,1.323967823502,0.941798755221676,0,0.853828638089378,0,0.173559738335131,2.35181753794506,7.05179573301261,0.17472666824203,0.171986032471617,3.09620260125072,2.55812609801649,3.85942648150083,0.387956065953678,0,0.677942222341597,0,0.19871461170299,0,5.08433595110488,0.0801588202515337,0.640358984218058,0.599428828746391,0,0,0,1.7286575758578,0.869767748958028,1.17847017308398,1.76675467895698,1.46443984837266,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0,0.0671834724867263,0,0,0,0.0824158583811665,0.0674035438541849,0.0984274815147488,0,0,0,0,0,0,0.2249738915515,0,0,0.335434687599266,0,0.209818352539992,0.105600336519406,0.179287339332845,5.18171032762502,0,0,1.77987976358325,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0.342173675768659,0.704815022316672,0.533937062838473,0.78602152549833,0.414239055347196,0,0,0,1.27668251554036,0,0,0.306345576763462,0,0,0,0.122026264901963,0.1251909307065,0,0,0,0,0.499921631848426,0,0,0.705797459094515,0,0,0,0,0,0,0.50313580350515,0,0.228840068396924,0.302461847526478,0.15543720058278,0.147855149989634,0.159296767163702,0,0,0,0.265841714557995,0,0,0,0.406870733204662,0,0.751873899297419,0,0.398095888698616,0,0.343395705182793,0.336749488765919,0,0.192619830407303,0,0.782982875895635,0.906823702049089,0.231522474323834,0.734210113519403,1.79088841081487,0,0.219284049578707,1.41351316756705,1.92914038270915,3.20990637240838,0,5.18145512596798,0.607719912354764,0,0,0,0,0,0.737318726261158,0,0,0,0,0.567515953566836,0,1.11903606175556,3.11038630016486,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,1.41696576325585,0.159633859057151,0,0,0,0,0,1.57036349601641,4.71878893390961,0.550285795565037,2.19498765685643,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0.0634158101939068,0,0,0.496211178389294,0,3.19406069098988,0,0,0,0,0.354809480650555,0,0,0.0679697329768317,0.0657727735628491,2.48207065856333,0.556157009460346,0.627944742804112,0,3.08299379645168,0,0,0,0,0,0,0,0,0.207216164163037,1.0243108625637,0.691259661814092,0,0.118332000730565,0.170426809518315,0,5.4985648450572,0.31020638566432,0.955538938977433,0.671132590786754,1.76670420507437,3.77945567445035,0,0,0,0,0,0,0,0.11294608203896,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,4.28529452653578,2.47026410200984,6.66003343520097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,2.84874188558019,0,0,0,0,0,1.27940389140589,0.23806443146374,0,0,0.112131862580613,0,0,0,0.684466602170562,0.673520530145875,1.2192774916755,0.665320713092027,1.22104902916462,2.66818364694289,0,0.359300808426348,0,0,0.813792356631477,1.33151354837103,0,0 | |||
|short_description=p@chr12:52541101..52541122,- | |||
}} |
Revision as of 13:32, 11 January 2014
Short description: | p@chr12:52541101..52541122, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:52541101..52541122, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 9.67e-25 | 253 |
squamous epithelial cell | 7.04e-09 | 63 |
duct epithelial cell | 1.31e-08 | 3 |
branched duct epithelial cell | 1.31e-08 | 3 |
tracheal epithelial cell | 1.31e-08 | 3 |
tracheoblast | 1.31e-08 | 3 |
placental epithelial cell | 1.69e-08 | 3 |
endo-epithelial cell | 1.90e-07 | 42 |
epithelial cell of tracheobronchial tree | 6.86e-07 | 9 |
epithelial cell of lower respiratory tract | 6.86e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
larynx | 5.27e-18 | 9 |
respiratory primordium | 1.08e-15 | 38 |
endoderm of foregut | 1.08e-15 | 38 |
segment of respiratory tract | 1.90e-13 | 47 |
endoderm-derived structure | 5.68e-13 | 160 |
endoderm | 5.68e-13 | 160 |
presumptive endoderm | 5.68e-13 | 160 |
respiratory tract | 1.15e-12 | 54 |
respiratory system | 3.16e-11 | 74 |
transitional epithelium | 4.41e-10 | 6 |
upper respiratory tract | 9.85e-10 | 19 |
chorion | 8.75e-09 | 7 |
subdivision of digestive tract | 1.45e-08 | 118 |
digestive system | 5.74e-08 | 145 |
digestive tract | 5.74e-08 | 145 |
primitive gut | 5.74e-08 | 145 |
urothelium | 7.25e-08 | 5 |
extraembryonic membrane | 7.52e-08 | 14 |
membranous layer | 7.52e-08 | 14 |
foregut | 1.28e-07 | 87 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 9.89e-28 | 106 |
cell type cancer | 3.25e-20 | 143 |
squamous cell carcinoma | 1.81e-17 | 14 |
cancer | 1.67e-12 | 235 |
disease of cellular proliferation | 5.32e-12 | 239 |