FFCP PHASE1:Hg19::chr15:85427903..85427915,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9154 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11001 | |||
|TSSclassifier=strong | |||
|UniProt=O00337,B7Z3M4,Q96PL7 | |||
|association_with_transcript=0bp_to_ENST00000286749,ENST00000394573,ENST00000537703,NM_004213,NM_201651,uc002blf.2,uc002blg.2,uc010bnb.2,uc010upd.1,uc010upe.1,uc010upf.1,uc010upg.1_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_3_at_SLC28A1_5end | |||
|id=chr15:85427903..85427915,+ | |||
|ontology_enrichment_celltype=CL:0000181!1.10e-24!12;CL:0000417!1.10e-24!12;CL:0000668!1.10e-24!12;CL:0000414!1.10e-24!12;CL:0000412!1.10e-24!12;CL:0000182!1.10e-24!12 | |||
|ontology_enrichment_celltype_v019=CL:0000182;3.87e-09;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,3.87e-09,12 | |||
|ontology_enrichment_development_v019=UBERON:0003918;1.07e-10;10!UBERON:0007687;1.07e-10;10!UBERON:0003104;3.33e-09;31 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!3.82e-27!19;UBERON:0006925!3.82e-27!19;UBERON:0008836!3.82e-27!19;UBERON:0008835!2.60e-23!22;UBERON:0003894!2.60e-23!22;UBERON:0009854!2.95e-22!23;UBERON:0007499!2.13e-20!25;UBERON:0009497!2.13e-20!25;UBERON:0000015!2.13e-20!25;UBERON:0002423!2.13e-20!25;UBERON:0006235!2.13e-20!25;UBERON:0004161!2.13e-20!25;UBERON:0005172!6.42e-20!55;UBERON:0005173!6.42e-20!55;UBERON:0005057!1.42e-19!26;UBERON:0009856!1.42e-19!26;UBERON:0002417!9.23e-18!61;UBERON:0000916!9.23e-18!61;UBERON:0002365!2.96e-16!31;UBERON:0002330!2.96e-16!31;UBERON:0002368!2.79e-14!35;UBERON:0000949!7.07e-11!45;UBERON:0001301!1.62e-09!1;UBERON:0005177!2.99e-09!107;UBERON:0003929!6.87e-09!54;UBERON:0009569!1.19e-08!113;UBERON:0004921!1.33e-08!129;UBERON:0004185!1.33e-08!129;UBERON:0002530!4.78e-08!59;UBERON:0000160!2.55e-07!27;UBERON:0001007!8.54e-07!155;UBERON:0001555!8.54e-07!155;UBERON:0007026!8.54e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0002108;2.43e-20;4!UBERON:0000160;4.00e-15;17!UBERON:0002107;1.00e-14;19!UBERON:0006925;1.00e-14;19!UBERON:0001301;3.85e-12;1!UBERON:0005409;7.93e-12;22!UBERON:0002423;3.58e-11;25!UBERON:0005172;2.32e-09;52!UBERON:0005173;2.32e-09;52!UBERON:0002365;5.45e-09;31!UBERON:0002330;5.45e-09;31!UBERON:0002368;7.97e-08;33!UBERON:0004921;2.97e-07;33!UBERON:0001007;3.38e-07;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002108,1.99e-20,4;UBERON:0005172,1.28e-15,54;UBERON:0005173,1.28e-15,54;UBERON:0000160,3.88e-15,17;UBERON:0002107,1.01e-14,19;UBERON:0006925,1.01e-14,19;UBERON:0008836,1.01e-14,19;UBERON:0002417,5.99e-14,60;UBERON:0000916,5.99e-14,60;UBERON:0008835,1.04e-12,22;UBERON:0003894,1.04e-12,22;UBERON:0009854,3.75e-12,23;UBERON:0001301,4.81e-12,1;UBERON:0007499,3.58e-11,25;UBERON:0009497,3.58e-11,25;UBERON:0000015,3.58e-11,25;UBERON:0002423,3.58e-11,25;UBERON:0006235,3.58e-11,25;UBERON:0004161,3.58e-11,25;UBERON:0009856,9.71e-11,26;UBERON:0005409,1.84e-10,25;UBERON:0002365,5.47e-09,31;UBERON:0002330,5.47e-09,31;UBERON:0004921,5.66e-08,118;UBERON:0002368,6.03e-08,35;UBERON:0005177,7.99e-08,101;UBERON:0002113,4.69e-07,26;UBERON:0003918,4.69e-07,26;UBERON:0011143,4.69e-07,26;UBERON:0005095,4.69e-07,26;UBERON:0007687,4.69e-07,26;UBERON:0009569,6.10e-07,112 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.71010852059789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,31.6887587054577,20.6393715502301,7.68026878685825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.7821073144885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.10674542563371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.0345239835768,1.22206028986725,0,0,0,0,0,0,0,0,0,0,2.41981432097328,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04836000945218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0,0.0671834724867263,0,0,0.630265458457789,0.247247575143499,0.539228350833479,0,0,0,0,0,0,0,0,0,0,0,13.9486101919581,3.88163952198986,0,0,0,0,0,0,0,0,0,0,0,0,0,6.30174604815755,1.32506888912221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.61411737168416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.95546639592486,1.5299169235277,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@SLC28A1 | |||
}} |
Revision as of 00:59, 12 January 2014
Short description: | p3@SLC28A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SLC28A1_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 0bp_to_ENST00000286749, ENST00000394573, ENST00000537703, NM_004213, NM_201651, uc002blf.2, uc002blg.2, uc010bnb.2, uc010upd.1, uc010upe.1, uc010upf.1, uc010upg.1_5end |
EntrezGene: | SLC28A1 |
HGNC: | 11001 |
UniProt: | O00337B7Z3M4Q96PL7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 3.87e-09 | 12 |
Ontology term | p-value | n |
---|---|---|
small intestine | 1.99e-20 | 4 |
abdomen element | 1.28e-15 | 54 |
abdominal segment element | 1.28e-15 | 54 |
intestine | 3.88e-15 | 17 |
liver | 1.01e-14 | 19 |
digestive gland | 1.01e-14 | 19 |
liver bud | 1.01e-14 | 19 |
abdominal segment of trunk | 5.99e-14 | 60 |
abdomen | 5.99e-14 | 60 |
hepatic diverticulum | 1.04e-12 | 22 |
liver primordium | 1.04e-12 | 22 |
digestive tract diverticulum | 3.75e-12 | 23 |
epididymis | 4.81e-12 | 1 |
epithelial sac | 3.58e-11 | 25 |
epithelium of foregut-midgut junction | 3.58e-11 | 25 |
anatomical boundary | 3.58e-11 | 25 |
hepatobiliary system | 3.58e-11 | 25 |
foregut-midgut junction | 3.58e-11 | 25 |
septum transversum | 3.58e-11 | 25 |
sac | 9.71e-11 | 26 |
gastrointestinal system | 1.84e-10 | 25 |
exocrine gland | 5.47e-09 | 31 |
exocrine system | 5.47e-09 | 31 |
subdivision of digestive tract | 5.66e-08 | 118 |
endocrine gland | 6.03e-08 | 35 |
trunk region element | 7.99e-08 | 101 |
kidney | 4.69e-07 | 26 |
kidney mesenchyme | 4.69e-07 | 26 |
upper urinary tract | 4.69e-07 | 26 |
kidney rudiment | 4.69e-07 | 26 |
kidney field | 4.69e-07 | 26 |
subdivision of trunk | 6.10e-07 | 112 |