FFCP PHASE1:Hg19::chr19:35739280..35739300,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=51599 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29572 | |||
|TSSclassifier=strong | |||
|UniProt=E9PHD4,A6NDW3,Q86X29,Q9BT33,Q9BWS2 | |||
|association_with_transcript=-258bp_to_ENST00000354900,ENST00000360798,ENST00000361790,NM_015925,NM_205834,NM_205835,uc002nyl.2,uc002nym.2,uc002nyn.2,uc002nyo.2,uc010xsr.1_5end | |||
|description=CAGE_peak_5_at_LSR_5end | |||
|id=chr19:35739280..35739300,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.34e-11!254 | |||
|ontology_enrichment_celltype_v019=CL:0000097;8.38e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,8.46e-08,5;CL:0002028,8.46e-08,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.74e-16!106;DOID:0050687!1.50e-12!143;DOID:162!7.01e-07!235 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.42e-17!115;UBERON:0004921!5.09e-11!129;UBERON:0004185!5.09e-11!129;UBERON:0005177!1.07e-10!107;UBERON:0000077!2.60e-10!130;UBERON:0001007!7.90e-10!155;UBERON:0001555!7.90e-10!155;UBERON:0007026!7.90e-10!155;UBERON:0005911!1.42e-09!82;UBERON:0004119!1.81e-09!169;UBERON:0000925!1.81e-09!169;UBERON:0006595!1.81e-09!169;UBERON:0001041!4.21e-09!98;UBERON:0000466!6.66e-09!126;UBERON:0005172!1.66e-08!55;UBERON:0005173!1.66e-08!55;UBERON:0009569!6.23e-08!113 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005177,9.22e-12,101;UBERON:0009569,2.78e-11,112;UBERON:0005172,7.85e-10,54;UBERON:0005173,7.85e-10,54;UBERON:0007023,1.50e-08,114;UBERON:0002417,1.53e-08,60;UBERON:0000916,1.53e-08,60;UBERON:0005911,1.63e-07,82;UBERON:0002100,2.29e-07,199 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,0.436882744260345,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0.236132343941038,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0.971680998056939,0.515151135268373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,1.17447437874188,0,0,0.560508562981536,0,0,0,0.205601498999509,0.167186495390678,0.32592226663359,0,0,0.222820913770347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.0945348171640679,0.443458794925128,0.175669571386252,1.30979075497713,0,0,0.649094787309367,0.696518949197069,0.930705723632056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0.365921118388786,0.265059536642971,0.580969714347592,1.14027160516907,1.26160425437814,0,0,0,0,0,0,0,0.168584690078102,0.241011029883482,0.220587945464788,0,0.237270619111097,0,0,0,0,0,0,0,2.53510069643662,4.91413608338813,1.77236972004421,0,2.21379189377604,0,0,0,0.100528972411631,0,0,0,0,1.04337364477569,0,0,0,0,0,1.71697232418975,0.246217006087397,0.936017060556951,0.148631162288728,0,0,0.141775097242386,0.358234090811393,0.290633938513962,0,0.492663237895943,0.880484340132261,8.08579650609011,9.36779697210249,7.82703087243556,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.299918973546171,2.43247561282381,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45031339509947,0.200506470303285,0,0,0,0,0.451199612907412,0.385076685522074,2.35304930753057,0,0.844413031143006,0,0,0,0,0.270946437543853,1.00337954770971,0,0,0.671624264166535,0,0,0.769350375349168,0,0.976135183992909,0.9273691048295,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0.50578890427775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.753150406214233,0,0,0.443430153536676,0,0.507447609232169,0.764637207142375,0,0.238231775457789,0,0.648473311192717,1.62009431171434,0.79312517629427,0.320472213382419,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0.333698283423817,0,0,0,0,0,0,1.12284324244932,0.73254089635947,1.57768678274367,0,0,0,0,0.307160702099232,0,0.140669416410513,0.111308705022906,0,0,1.19548792950642,0.276283915531148,1.0077309914171,0.613612095012929,0.246169610922139,0,0.449341755736634,0.358042349351218,0,0.197286811273867,0,0,0,0,0,0.260427761085233,0.174919999992391,1.44999915086959,0.1137934482855,0.254253650292766,0.945550727071745,0,0,0.173624994933292,0,0,0,0,0.295547618953547,0,0,0.83654246567162,1.00035336054936,0.91153644677601,0.23056390438806,0.359030577639089,0.325942115766024,0,0.0915975934018623,0,0,0,0.166211681900156,0.902382642468723,0.784250137270958,0.335643173951685,0.189753732724185,0,0.210998064528027,0.326465616318295,0.989471500037586,0.216388639742091,0.995261931078505,0.530745387020035,0,0.296521128680622,0,0.208843899010911,0.269604531922708,1.60515529459758,0.234264445725339,0,0.19566461893209,0,0.394584402849391,0,0.30607276163049,1.70603764996917,6.31358361540869,1.03688191397247,0,0,0,0,0,0.554698692052555,0,0.0979923974143777,0,0.698906672968121,2.23581842213102,0.19351266257817,0.803982487948041,0.574808199372465,0.387956065953678,0.0882561266915003,0,0,0.397429223405979,0.189932387867636,0.977756913674015,0.240476460754601,1.06726497369676,0.19980960958213,0.72045208577053,1.03082936549324,1.02956998717179,0,0.621262677827163,0.235694034616795,0,0,0,0,0,0.136905378891993,0,0.429765441419957,0,0.837847203816763,1.60412296808179,0,0.399358000997982,0,0.223171457441873,0.873385142327441,0,1.16495949527454,0.86661500537946,0.741742725430498,0.539228350833479,0.295282444544246,0.508039992394707,0,0,0.482259445395058,0.275078873194468,0.415440338029185,0.2249738915515,0,0.182248669974074,0,1.02447419488958,0.577000469484979,0.633602019116439,0,1.15149118391667,1.42939065274673,0,0,0,0,0,0,0.328370082997356,0,0,0.293104467356165,1.32506888912221,0,0.13223260174269,0.342173675768659,0,1.38823636338003,0.471612915298998,1.65695622138878,0,0,0.365377795142688,0.638341257770182,0,0,0.306345576763462,0.655745261419609,0.157054096250234,0,0,0.250381861413,0,0.332787154610557,0.310482014706917,0,0,0,0,0.235265819698172,0.936669811613763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0.192619830407303,0,1.30497145982606,0,0.463044948647668,0,0,0.308801447160972,0.438568099157414,0,0.578742114812744,0.506827321959218,1.02496607435179,0,0,0.138258436151731,0,0.265729680626726,0.327130788511688,0,0,0,0,0,0,0,0,0.559518030877778,0,0,0,0,0.109209638192014,0,0,0,0,0,0,1.60114149657094,0,0,0.256916900385838,0,0.159633859057151,0,0,0.345786262321089,0.322951291263702,0,0.0981477185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| |||
|short_description=p5@LSR | |||
}} |
Revision as of 22:45, 20 January 2014
Short description: | p5@LSR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LSR_5end |
Coexpression cluster: | NA |
Association with transcript: | -258bp_to_ENST00000354900, ENST00000360798, ENST00000361790, NM_015925, NM_205834, NM_205835, uc002nyl.2, uc002nym.2, uc002nyn.2, uc002nyo.2, uc010xsr.1_5end |
EntrezGene: | LSR |
HGNC: | 29572 |
UniProt: | E9PHD4A6NDW3Q86X29Q9BT33Q9BWS2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 8.46e-08 | 5 |
basophil mast progenitor cell | 8.46e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
trunk region element | 9.22e-12 | 101 |
subdivision of trunk | 2.78e-11 | 112 |
abdomen element | 7.85e-10 | 54 |
abdominal segment element | 7.85e-10 | 54 |
adult organism | 1.50e-08 | 114 |
abdominal segment of trunk | 1.53e-08 | 60 |
abdomen | 1.53e-08 | 60 |
endo-epithelium | 1.63e-07 | 82 |
trunk | 2.29e-07 | 199 |