FFCP PHASE1:Hg19::chr1:153005159..153005205,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C197 | |||
|description=CAGE_peak_at_chr1:153005159..153005205,+ | |||
|id=chr1:153005159..153005205,+ | |||
|ontology_enrichment_celltype=CL:0002076!1.62e-26!43;CL:0000223!3.87e-18!59;CL:0002251!1.70e-17!21;CL:0002159!5.49e-15!13;CL:0002368!1.43e-14!13;CL:0000622!8.62e-14!5;CL:0002621!1.98e-13!3;CL:0002328!3.12e-13!3;CL:0002623!3.68e-13!3;CL:0000066!1.55e-11!254;CL:0000154!1.67e-11!6;CL:0000240!2.94e-11!6;CL:0000311!2.94e-11!6;CL:0000079!2.94e-11!6;CL:0000237!2.94e-11!6;CL:0000036!2.94e-11!6;CL:0000357!2.94e-11!6;CL:0000114!2.94e-11!6;CL:0000575!1.35e-09!2;CL:0000362!8.78e-09!8;CL:0002077!1.36e-08!33;CL:0000312!3.02e-08!5;CL:0000150!1.12e-07!9;CL:0002202!1.53e-07!9;CL:0002632!1.53e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002621;1.02e-22;3!CL:0002159;9.67e-19;14!CL:0000575;5.41e-16;2!CL:0000622;4.00e-14;5!CL:0000312;5.97e-14;5!CL:0000362;1.71e-13;9!CL:0002076;3.91e-13;42!CL:0002251;8.75e-13;20!CL:0000154;7.35e-12;6!CL:0000240;1.02e-11;6!CL:0000311;1.02e-11;6!CL:0000079;1.02e-11;6!CL:0000237;1.02e-11;6!CL:0002623;6.28e-11;3!CL:0002328;7.30e-11;3!CL:0002252;1.78e-08;1!CL:0000244;3.34e-08;4!CL:0000731;3.34e-08;4!CL:0000150;4.55e-08;9!CL:0002077;2.57e-07;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0002621,9.51e-23,3;CL:0002159,1.03e-18,14;CL:0002076,5.13e-16,42;CL:0000575,6.78e-16,2;CL:0000622,3.20e-14,5;CL:0000312,6.24e-14,5;CL:0000362,1.65e-13,9;CL:0002251,8.39e-13,20;CL:0000154,6.11e-12,6;CL:0000240,1.06e-11,6;CL:0000311,1.06e-11,6;CL:0000079,1.06e-11,6;CL:0000237,1.06e-11,6;CL:0000036,1.06e-11,6;CL:0000357,1.06e-11,6;CL:0000114,1.06e-11,6;CL:0000223,3.78e-11,58;CL:0002623,5.41e-11,3;CL:0002328,7.67e-11,3;CL:0002252,2.06e-08,1;CL:0000244,3.22e-08,4;CL:0000731,3.22e-08,4;CL:0000150,4.03e-08,9;CL:0002077,2.05e-07,34 | |||
|ontology_enrichment_development_v019=CL:0000357;1.02e-11;6!CL:0000114;1.02e-11;6!UBERON:0000358;9.73e-09;1!UBERON:0009143;9.73e-09;1!CL:0000223;3.34e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3151;5.70e-09;1!DOID:3149;5.70e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,5.28e-09,1;DOID:3149,5.28e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0000166!4.06e-18!21;UBERON:0001004!5.03e-16!72;UBERON:0000165!9.75e-16!28;UBERON:0000930!9.75e-16!28;UBERON:0000161!1.31e-14!35;UBERON:0003102!2.53e-14!95;UBERON:0001949!1.98e-13!3;UBERON:0004815!3.12e-13!3;UBERON:0002031!3.12e-13!3;UBERON:0001444!8.15e-12!48;UBERON:0004119!4.75e-11!169;UBERON:0000925!4.75e-11!169;UBERON:0006595!4.75e-11!169;UBERON:0002185!4.91e-10!4;UBERON:0000065!1.33e-08!53;UBERON:0000078!6.61e-08!18;UBERON:0000365!8.49e-08!5;UBERON:0001003!1.86e-07!14;UBERON:0007376!1.86e-07!14;UBERON:0007383!1.86e-07!14;UBERON:0001007!1.87e-07!155;UBERON:0001555!1.87e-07!155;UBERON:0007026!1.87e-07!155;UBERON:0007196!4.10e-07!14;UBERON:0001558!4.10e-07!14;UBERON:0001723!6.05e-07!3;UBERON:0001033!6.05e-07!3;UBERON:0010056!6.05e-07!3;UBERON:0001042!7.56e-07!10;UBERON:0009145!7.56e-07!10;UBERON:0001044!8.74e-07!6;UBERON:0003293!8.74e-07!6;UBERON:0003294!8.74e-07!6;UBERON:0010047!8.74e-07!6;UBERON:0000167!8.74e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;1.02e-22;3!UBERON:0000486;3.89e-15;12!UBERON:0010371;4.82e-14;31!UBERON:0000165;2.25e-12;28!UBERON:0001003;2.80e-12;15!UBERON:0007376;2.80e-12;15!UBERON:0001723;1.97e-11;3!UBERON:0001033;1.97e-11;3!UBERON:0004815;7.30e-11;3!UBERON:0002031;7.30e-11;3!UBERON:0001043;1.20e-10;3!UBERON:0003929;4.62e-10;7!UBERON:0000161;1.32e-09;19!UBERON:0000166;1.32e-09;19!UBERON:0003350;7.27e-09;8!UBERON:0001828;7.27e-09;8!UBERON:0005795;9.73e-09;1!UBERON:0007029;9.73e-09;1!UBERON:0001041;1.29e-08;14!UBERON:0005911;1.67e-08;36!UBERON:0000014;1.92e-08;4!UBERON:0000964;1.92e-08;4!UBERON:0010409;1.92e-08;4!UBERON:0004807;3.00e-08;22!UBERON:0007811;6.58e-07;52!UBERON:0002185;7.48e-07;5!UBERON:0003102;9.15e-07;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,9.51e-23,3;UBERON:0003102,2.22e-16,99;UBERON:0000166,5.25e-16,22;UBERON:0000161,2.37e-12,36;UBERON:0001003,2.49e-12,15;UBERON:0007376,2.49e-12,15;UBERON:0007383,2.49e-12,15;UBERON:0000165,5.98e-12,29;UBERON:0000930,5.98e-12,29;UBERON:0001723,1.97e-11,3;UBERON:0001033,1.97e-11,3;UBERON:0010056,1.97e-11,3;UBERON:0001444,4.90e-11,49;UBERON:0004815,7.67e-11,3;UBERON:0002031,7.67e-11,3;UBERON:0001043,1.26e-10,3;UBERON:0009143,1.26e-10,3;UBERON:0000033,1.75e-09,56;UBERON:0003350,7.07e-09,8;UBERON:0001828,7.07e-09,8;UBERON:0007029,7.18e-09,1;UBERON:0000014,1.59e-08,4;UBERON:0001004,1.73e-08,74;UBERON:0000153,1.96e-08,62;UBERON:0007811,1.96e-08,62;UBERON:0000964,2.15e-08,4;UBERON:0010409,2.15e-08,4;UBERON:0004348,2.15e-08,4;UBERON:0005427,2.15e-08,4;UBERON:0004119,1.40e-07,160;UBERON:0000925,1.40e-07,160;UBERON:0006595,1.40e-07,160;UBERON:0002185,7.70e-07,5;UBERON:0000365,9.73e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.59710612239464,0.90361775633475,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18577172975525,3.33705998505986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.67195621010264,2.18196896472668,1.72082757233402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.25576626829166,2.24803506515239,1.10581869652794,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0.179117045405697,0.581267877027924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.27439812593581,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.90036147621913,0,0,0,0,0,0,0,0,0,3.63626813794152,0.384380134730212,0,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.865999014529609,0,0,0,0,1.68471475667626,2.21715076768338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53366118706464,2.00070672109872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0,0,0,0,0,0,2.23074737923365,0,0,0,0,0,0,0,0,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.68978156359193,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.839277046316667,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366857197043358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,1.7071847709395,7.60385627995501,0,0,0,0,0,0,0,0,0,0,0,0,0,2.4285549652957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639701945702943,0,0.193766729508018,0,0,0,0,29.1740442181928,7.52913262387618,0.80822463617505,0.502055437748735,0,0.0814032686109745,0,0,0,2.34640942403454,0.122241444182866,2.03448089157869,0,0,0 | |||
|short_description=p@chr1:153005159..153005205,+ | |||
}} |
Revision as of 20:57, 10 January 2014
Short description: | p@chr1:153005159..153005205, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:153005159..153005205, + |
Coexpression cluster: | C197_tongue_esophagus_tonsil_salivary_cervix_nasal_Gingival |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gingival epithelial cell | 9.51e-23 | 3 |
general ecto-epithelial cell | 1.03e-18 | 14 |
endo-epithelial cell | 5.13e-16 | 42 |
corneal epithelial cell | 6.78e-16 | 2 |
acinar cell | 3.20e-14 | 5 |
keratinocyte | 6.24e-14 | 5 |
epidermal cell | 1.65e-13 | 9 |
epithelial cell of alimentary canal | 8.39e-13 | 20 |
protein secreting cell | 6.11e-12 | 6 |
stratified squamous epithelial cell | 1.06e-11 | 6 |
keratin accumulating cell | 1.06e-11 | 6 |
stratified epithelial cell | 1.06e-11 | 6 |
keratinizing barrier epithelial cell | 1.06e-11 | 6 |
epithelial fate stem cell | 1.06e-11 | 6 |
stratified epithelial stem cell | 1.06e-11 | 6 |
surface ectodermal cell | 1.06e-11 | 6 |
endodermal cell | 3.78e-11 | 58 |
acinar cell of salivary gland | 5.41e-11 | 3 |
bronchial epithelial cell | 7.67e-11 | 3 |
epithelial cell of esophagus | 2.06e-08 | 1 |
transitional epithelial cell | 3.22e-08 | 4 |
urothelial cell | 3.22e-08 | 4 |
glandular epithelial cell | 4.03e-08 | 9 |
ecto-epithelial cell | 2.05e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 9.51e-23 | 3 |
surface structure | 2.22e-16 | 99 |
oral opening | 5.25e-16 | 22 |
orifice | 2.37e-12 | 36 |
skin epidermis | 2.49e-12 | 15 |
outer epithelium | 2.49e-12 | 15 |
enveloping layer of ectoderm | 2.49e-12 | 15 |
mouth | 5.98e-12 | 29 |
stomodeum | 5.98e-12 | 29 |
tongue | 1.97e-11 | 3 |
gustatory system | 1.97e-11 | 3 |
future tongue | 1.97e-11 | 3 |
subdivision of head | 4.90e-11 | 49 |
lower respiratory tract epithelium | 7.67e-11 | 3 |
epithelium of bronchus | 7.67e-11 | 3 |
esophagus | 1.26e-10 | 3 |
esophageal region | 1.26e-10 | 3 |
head | 1.75e-09 | 56 |
epithelium of mucosa | 7.07e-09 | 8 |
gingiva | 7.07e-09 | 8 |
surface | 7.18e-09 | 1 |
zone of skin | 1.59e-08 | 4 |
respiratory system | 1.73e-08 | 74 |
anterior region of body | 1.96e-08 | 62 |
craniocervical region | 1.96e-08 | 62 |
cornea | 2.15e-08 | 4 |
eye surface | 2.15e-08 | 4 |
optic eminence | 2.15e-08 | 4 |
corneal primordium | 2.15e-08 | 4 |
endoderm-derived structure | 1.40e-07 | 160 |
endoderm | 1.40e-07 | 160 |
presumptive endoderm | 1.40e-07 | 160 |
bronchus | 7.70e-07 | 5 |
urothelium | 9.73e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 5.28e-09 | 1 |
keratoacanthoma | 5.28e-09 | 1 |