FFCP PHASE1:Mm9::chr12:86337259..86337369,+: Difference between revisions
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{{FFCP|EntrezGene=56531|HGNC=|MCL_coexpression_id=1107|UniProt=D3YWX2,E9QAW2,E9Q803,Q9R0I7|association_with_transcript=0bp_to_ENSMUST00000021670,ENSMUST00000095547,ENSMUST00000168977,NM_178363,uc007ogd.1,uc007oge.1_5end|description=CAGE_peak_1_at_Ylpm1_5end|id=chr12:86337259..86337369,+|ontology_enrichment_celltype=CL:0000540!5.94e-07!33;CL:0000047!5.94e-07!33;CL:0000031!5.94e-07!33;CL:0000404!5.94e-07!33|ontology_enrichment_celltype_v019_2=CL:0000540,5.94e-07,33;CL:0000047,5.94e-07,33;CL:0000031,5.94e-07,33;CL:0000404,5.94e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.79e-13!73;UBERON:0005743!1.79e-13!73;UBERON:0000153!1.12e-12!94;UBERON:0000073!3.42e-12!75;UBERON:0001016!3.42e-12!75;UBERON:0004121!4.02e-12!102;UBERON:0000924!4.02e-12!102;UBERON:0006601!4.02e-12!102;UBERON:0000033!5.56e-12!63;UBERON:0000955!8.69e-12!50;UBERON:0006238!8.69e-12!50;UBERON:0002346!3.05e-11!71;UBERON:0003075!3.05e-11!71;UBERON:0007284!3.05e-11!71;UBERON:0003056!3.21e-11!49;UBERON:0002616!3.33e-11!49;UBERON:0001049!9.35e-11!52;UBERON:0005068!9.35e-11!52;UBERON:0006241!9.35e-11!52;UBERON:0007135!9.35e-11!52;UBERON:0007811!3.31e-10!86;UBERON:0000468!7.94e-10!333;UBERON:0003080!1.75e-09!40;UBERON:0002780!5.68e-09!39;UBERON:0001890!5.68e-09!39;UBERON:0006240!5.68e-09!39;UBERON:0002791!8.74e-09!29;UBERON:0003528!8.74e-09!29;UBERON:0001893!8.74e-09!29;UBERON:0002020!9.07e-09!34;UBERON:0000922!3.09e-08!328;UBERON:0000956!7.99e-08!21;UBERON:0001869!7.99e-08!21;UBERON:0000203!7.99e-08!21;UBERON:0002021!1.36e-07!10;UBERON:0000411!1.36e-07!10;UBERON:0001950!1.36e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0004121,7.65e-14,95;UBERON:0000924,7.65e-14,95;UBERON:0006601,7.65e-14,95;UBERON:0001017,1.79e-13,73;UBERON:0002346,1.93e-13,64;UBERON:0003075,1.93e-13,64;UBERON:0007284,1.93e-13,64;UBERON:0010371,4.14e-13,73;UBERON:0001016,3.42e-12,75;UBERON:0000073,2.33e-11,54;UBERON:0003056,3.21e-11,49;UBERON:0001049,9.35e-11,52;UBERON:0005068,9.35e-11,52;UBERON:0006241,9.35e-11,52;UBERON:0007135,9.35e-11,52;UBERON:0000955,1.08e-10,47;UBERON:0006238,1.08e-10,47;UBERON:0002616,3.99e-10,46;UBERON:0003080,1.75e-09,40;UBERON:0002780,5.68e-09,39;UBERON:0001890,5.68e-09,39;UBERON:0006240,5.68e-09,39;UBERON:0003528,8.74e-09,29;UBERON:0002791,8.74e-09,29;UBERON:0001893,8.74e-09,29;UBERON:0002020,9.07e-09,34;UBERON:0000956,7.99e-08,21;UBERON:0001869,7.99e-08,21;UBERON:0000203,7.99e-08,21;UBERON:0002021,1.36e-07,10;UBERON:0000411,1.36e-07,10;UBERON:0001950,1.36e-07,10;UBERON:0010314,3.54e-07,92;UBERON:0000922,7.99e-07,320|phase1_expression=38.5958721522553,15.3549179361319,12.2849794635175,22.3823516367054,24.543890767371,28.875234768845,19.6234618100242,36.2836538870829,35.056391815765,27.1514850533512,33.0450678675225,43.0769658574817,50.5042153297057,39.4266014909678,42.3049397505892,31.383666445423,28.682037003254,40.2214260831753,47.5787084611914,42.014575528005,81.1312988041206,26.7092658730381,21.6795824985316,13.5993559374396,15.3704218315004,12.6331032105304,7.75371593086335,14.4365725899546,12.7315691035771,18.9022597319948,12.4169085966971,37.4668097341182,43.6695999185045,15.8481681015439,27.4409038763711,17.1221684719247,21.6419517638111,13.811543814318,10.9386948233332,8.89990364755457,19.4116391050235,17.0761371239611,9.22469670759192,33.7403472174547,30.0075716409763,29.9181206023541,41.4667412504461,18.7501634487184,16.2567775223509,21.970578595394,24.4976237844384,27.3129872293446,34.2276516357782,79.7898356212479,85.3678249821859,26.7549813477385,33.8109459127733,19.5955395065428,87.1983946304866,85.1675476627973,74.7921056137291,16.6033820713875,24.9002542911119,23.8473425079571,26.6993917893083,14.9200824138681,26.664409836138,33.4269925629752,99.1272693669046,83.9736936423116,85.6022592700125,51.4171771926846,47.7076048455485,78.8840746944304,73.8968581550602,69.8606277823616,92.4973400394865,83.6352064457979,90.0134284881587,85.8579733123562,69.4391214942289,70.3233050251626,62.257808777308,58.5273114432947,73.0375624373152,91.6294900823107,79.3010262051003,80.3381611507046,18.4014649799637,30.304195602821,60.291813649949,18.0689014166091,19.039197343817,23.2072372404261,37.6870322119648,55.1073071129723,34.9706606128062,25.3941180641306,15.0675882669664,18.726997449048,35.7742286232768,32.0816193535795,76.4415719119937,21.3320010945999,11.9070072556168,16.9751109868316,12.6381111253696,33.6842445171227,294.153435823187,67.3927311354305,42.156934404171,35.3179954842084,44.2781754731632,40.5443903086555,65.732087288859,43.8576403740567,48.944603611406,123.921648880364,65.4611808442907,58.2360659810673,58.5230023920043,58.1850303762267,41.0061874679869,154.881041619108,132.370318706104,39.5958435573317,31.631192869563,10.1983464268879,22.3643599648594,129.419112445767,138.165182051225,112.837608197352,140.797699355744,134.762046013084,111.789967973043,121.843188563886,63.8532811341483,59.3421249810144,53.3245020295054,102.485183816713,79.7638315361374,43.4514977379264,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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:56531 | |||
|HGNC= | |||
|MCL_coexpression_id=1107 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:D3YWX2,uniprot:E9QAW2,uniprot:E9Q803,uniprot:Q9R0I7 | |||
|association_with_transcript=0bp_to_ENSMUST00000021670,ENSMUST00000095547,ENSMUST00000168977,NM_178363,uc007ogd.1,uc007oge.1_5end | |||
|cluster_id=chr12:86337259..86337369,+ | |||
|description=CAGE_peak_1_at_Ylpm1_5end | |||
|id=chr12:86337259..86337369,+ | |||
|ontology_enrichment_celltype=CL:0000540!5.94e-07!33;CL:0000047!5.94e-07!33;CL:0000031!5.94e-07!33;CL:0000404!5.94e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,5.94e-07,33;CL:0000047,5.94e-07,33;CL:0000031,5.94e-07,33;CL:0000404,5.94e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.79e-13!73;UBERON:0005743!1.79e-13!73;UBERON:0000153!1.12e-12!94;UBERON:0000073!3.42e-12!75;UBERON:0001016!3.42e-12!75;UBERON:0004121!4.02e-12!102;UBERON:0000924!4.02e-12!102;UBERON:0006601!4.02e-12!102;UBERON:0000033!5.56e-12!63;UBERON:0000955!8.69e-12!50;UBERON:0006238!8.69e-12!50;UBERON:0002346!3.05e-11!71;UBERON:0003075!3.05e-11!71;UBERON:0007284!3.05e-11!71;UBERON:0003056!3.21e-11!49;UBERON:0002616!3.33e-11!49;UBERON:0001049!9.35e-11!52;UBERON:0005068!9.35e-11!52;UBERON:0006241!9.35e-11!52;UBERON:0007135!9.35e-11!52;UBERON:0007811!3.31e-10!86;UBERON:0000468!7.94e-10!333;UBERON:0003080!1.75e-09!40;UBERON:0002780!5.68e-09!39;UBERON:0001890!5.68e-09!39;UBERON:0006240!5.68e-09!39;UBERON:0002791!8.74e-09!29;UBERON:0003528!8.74e-09!29;UBERON:0001893!8.74e-09!29;UBERON:0002020!9.07e-09!34;UBERON:0000922!3.09e-08!328;UBERON:0000956!7.99e-08!21;UBERON:0001869!7.99e-08!21;UBERON:0000203!7.99e-08!21;UBERON:0002021!1.36e-07!10;UBERON:0000411!1.36e-07!10;UBERON:0001950!1.36e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,7.65e-14,95;UBERON:0000924,7.65e-14,95;UBERON:0006601,7.65e-14,95;UBERON:0001017,1.79e-13,73;UBERON:0002346,1.93e-13,64;UBERON:0003075,1.93e-13,64;UBERON:0007284,1.93e-13,64;UBERON:0010371,4.14e-13,73;UBERON:0001016,3.42e-12,75;UBERON:0000073,2.33e-11,54;UBERON:0003056,3.21e-11,49;UBERON:0001049,9.35e-11,52;UBERON:0005068,9.35e-11,52;UBERON:0006241,9.35e-11,52;UBERON:0007135,9.35e-11,52;UBERON:0000955,1.08e-10,47;UBERON:0006238,1.08e-10,47;UBERON:0002616,3.99e-10,46;UBERON:0003080,1.75e-09,40;UBERON:0002780,5.68e-09,39;UBERON:0001890,5.68e-09,39;UBERON:0006240,5.68e-09,39;UBERON:0003528,8.74e-09,29;UBERON:0002791,8.74e-09,29;UBERON:0001893,8.74e-09,29;UBERON:0002020,9.07e-09,34;UBERON:0000956,7.99e-08,21;UBERON:0001869,7.99e-08,21;UBERON:0000203,7.99e-08,21;UBERON:0002021,1.36e-07,10;UBERON:0000411,1.36e-07,10;UBERON:0001950,1.36e-07,10;UBERON:0010314,3.54e-07,92;UBERON:0000922,7.99e-07,320 | |||
|phase1_expression=38.5958721522553,15.3549179361319,12.2849794635175,22.3823516367054,24.543890767371,28.875234768845,19.6234618100242,36.2836538870829,35.056391815765,27.1514850533512,33.0450678675225,43.0769658574817,50.5042153297057,39.4266014909678,42.3049397505892,31.383666445423,28.682037003254,40.2214260831753,47.5787084611914,42.014575528005,81.1312988041206,26.7092658730381,21.6795824985316,13.5993559374396,15.3704218315004,12.6331032105304,7.75371593086335,14.4365725899546,12.7315691035771,18.9022597319948,12.4169085966971,37.4668097341182,43.6695999185045,15.8481681015439,27.4409038763711,17.1221684719247,21.6419517638111,13.811543814318,10.9386948233332,8.89990364755457,19.4116391050235,17.0761371239611,9.22469670759192,33.7403472174547,30.0075716409763,29.9181206023541,41.4667412504461,18.7501634487184,16.2567775223509,21.970578595394,24.4976237844384,27.3129872293446,34.2276516357782,79.7898356212479,85.3678249821859,26.7549813477385,33.8109459127733,19.5955395065428,87.1983946304866,85.1675476627973,74.7921056137291,16.6033820713875,24.9002542911119,23.8473425079571,26.6993917893083,14.9200824138681,26.664409836138,33.4269925629752,99.1272693669046,83.9736936423116,85.6022592700125,51.4171771926846,47.7076048455485,78.8840746944304,73.8968581550602,69.8606277823616,92.4973400394865,83.6352064457979,90.0134284881587,85.8579733123562,69.4391214942289,70.3233050251626,62.257808777308,58.5273114432947,73.0375624373152,91.6294900823107,79.3010262051003,80.3381611507046,18.4014649799637,30.304195602821,60.291813649949,18.0689014166091,19.039197343817,23.2072372404261,37.6870322119648,55.1073071129723,34.9706606128062,25.3941180641306,15.0675882669664,18.726997449048,35.7742286232768,32.0816193535795,76.4415719119937,21.3320010945999,11.9070072556168,16.9751109868316,12.6381111253696,33.6842445171227,294.153435823187,67.3927311354305,42.156934404171,35.3179954842084,44.2781754731632,40.5443903086555,65.732087288859,43.8576403740567,48.944603611406,123.921648880364,65.4611808442907,58.2360659810673,58.5230023920043,58.1850303762267,41.0061874679869,154.881041619108,132.370318706104,39.5958435573317,31.631192869563,10.1983464268879,22.3643599648594,129.419112445767,138.165182051225,112.837608197352,140.797699355744,134.762046013084,111.789967973043,121.843188563886,63.8532811341483,59.3421249810144,53.3245020295054,102.485183816713,79.7638315361374,43.4514977379264,70.5843548836969,70.5298547471146,102.803150217656,96.4696313744919,76.4606072407387,104.774865149301,89.0295810812638,116.867557543712,99.2364340284672,51.9493885853352,95.6482537336057,84.6252764648865,79.0203403806503,69.2639248528356,11.937624184325,14.6688307055388,16.76564646434,57.5809647648695,60.2731974151417,44.2952671194097,61.3168865165695,66.3095460988751,54.7648250750193,58.5985540771028,51.7767664701265,52.7779347499606,58.2541868693721,48.4294019033331,66.6385614466934,49.269395762337,59.0589810132926,46.8380401473697,133.534117338221,123.6913440799,29.7376904685418,37.8164310328868,91.7139477301506,89.4111186662688,90.8515602320758,73.61448648752,56.0392670489073,46.9857296498021,33.6915633696603,39.5277491337626,42.4756502872455,40.1892073523125,46.2064886472315,53.9291645192533,36.5273304288233,37.8368419183298,45.3306283277865,72.3193084819583,123.978509240388,69.2414514674068,69.8228953803453,68.4525602129509,69.9396100594286,68.638718810515,49.2976005421917,37.0191491765402,32.0168837254121,68.5733384493147,64.2747914020174,54.1917690847498,56.8008339887808,49.4413177492454,30.0458505102075,47.7575588168346,46.2085396308851,33.4964924089459,64.6956929373095,46.8897594062314,43.3732365629239,46.2219346643215,35.5206878773386,38.113038187706,65.2178761288115,53.6260695310472,85.3936476556216,72.6508967117805,73.9274282108782,89.7833539888132,72.6033104702342,75.5167217209681,83.2313560880688,72.1974888255006,83.8732083138382,55.5496636886352,55.6045641608184,55.689887553882,31.6661696272472,14.1415477792864,44.7505488447323,60.9820209333459,100.023017562394,92.8316557810249,32.4591191845817,39.6379355710866,80.4545959511454,73.402483927768,108.573392457331,87.9405176465391,94.2438391368527,117.759836808154,107.274835943847,83.2929195047239,101.19367115431,151.021018718249,82.6091295912123,50.5706314415005,68.0867490097948,108.715311038901,59.7353122529833,51.712275501011,47.7671220004307,43.5677734236125,49.0201142182083,51.6491048545798,56.5957962038404,58.5289304458784,59.8915595686332,65.7356456506497,42.1674434299995,49.5050607591297,78.641548929125,74.0051096468685,55.2361579752362,57.8709994585299,79.093744204454,69.5638388648075,60.2249415403763,40.4938382322417,40.5982054950219,38.3416048263514,48.5162475720916,202.81009111802,82.8312508949995,85.4031016982687,56.1050016814741,75.5048138827282,52.1750697567433,112.182307716358,57.7543577096742,57.3755492937759,60.373415922526,60.0895377844964,88.9879422463874,51.0175326250545,30.2561605389062,32.6086883914123,23.6321955205565,27.6854479224383,73.3899505108234,88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| |||
|short_description=p1@Ylpm1 | |||
}} |
Revision as of 09:48, 5 August 2015
Short description: | p1@Ylpm1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ylpm1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1107 |
Association with transcript: | 0bp_to_ENSMUST00000021670, ENSMUST00000095547, ENSMUST00000168977, NM_178363, uc007ogd.1, uc007oge.1_5end |
EntrezGene: | 56531 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 5.94e-07 | 33 |
neuronal stem cell | 5.94e-07 | 33 |
neuroblast | 5.94e-07 | 33 |
electrically signaling cell | 5.94e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 7.65e-14 | 95 |
ectoderm | 7.65e-14 | 95 |
presumptive ectoderm | 7.65e-14 | 95 |
central nervous system | 1.79e-13 | 73 |
neurectoderm | 1.93e-13 | 64 |
neural plate | 1.93e-13 | 64 |
presumptive neural plate | 1.93e-13 | 64 |
ecto-epithelium | 4.14e-13 | 73 |
nervous system | 3.42e-12 | 75 |
regional part of nervous system | 2.33e-11 | 54 |
pre-chordal neural plate | 3.21e-11 | 49 |
neural tube | 9.35e-11 | 52 |
neural rod | 9.35e-11 | 52 |
future spinal cord | 9.35e-11 | 52 |
neural keel | 9.35e-11 | 52 |
brain | 1.08e-10 | 47 |
future brain | 1.08e-10 | 47 |
regional part of brain | 3.99e-10 | 46 |
anterior neural tube | 1.75e-09 | 40 |
regional part of forebrain | 5.68e-09 | 39 |
forebrain | 5.68e-09 | 39 |
future forebrain | 5.68e-09 | 39 |
brain grey matter | 8.74e-09 | 29 |
regional part of telencephalon | 8.74e-09 | 29 |
telencephalon | 8.74e-09 | 29 |
gray matter | 9.07e-09 | 34 |
cerebral cortex | 7.99e-08 | 21 |
cerebral hemisphere | 7.99e-08 | 21 |
pallium | 7.99e-08 | 21 |
occipital lobe | 1.36e-07 | 10 |
visual cortex | 1.36e-07 | 10 |
neocortex | 1.36e-07 | 10 |
structure with developmental contribution from neural crest | 3.54e-07 | 92 |
embryo | 7.99e-07 | 320 |