FFCP PHASE1:Mm9::chr14:8826649..8826664,-: Difference between revisions
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{{FFCP|EntrezGene=13421|HGNC=|MCL_coexpression_id=26|UniProt=O55070|association_with_transcript=31bp_to_NM_007870,uc007sem.1_5end|description=CAGE_peak_3_at_Dnase1l3_5end|id=chr14:8826649..8826664,-|ontology_enrichment_celltype=CL:0000414!5.78e-07!11|ontology_enrichment_celltype_v019_2=CL:0000182,3.88e-09,5;CL:0000553,2.64e-07,6;CL:0000556,2.64e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005057!1.16e-14!51;UBERON:0002107!2.16e-14!22;UBERON:0007499!2.16e-14!22;UBERON:0006925!2.16e-14!22;UBERON:0009497!2.16e-14!22;UBERON:0000015!2.16e-14!22;UBERON:0002423!2.16e-14!22;UBERON:0006235!2.16e-14!22;UBERON:0008835!2.16e-14!22;UBERON:0003894!2.16e-14!22;UBERON:0004161!2.16e-14!22;UBERON:0008836!2.16e-14!22;UBERON:0002405!1.23e-13!70;UBERON:0009854!2.01e-13!23;UBERON:0009856!2.01e-13!23;UBERON:0002365!3.72e-13!25;UBERON:0002330!3.72e-13!25;UBERON:0004119!1.99e-11!130;UBERON:0000925!1.99e-11!130;UBERON:0006595!1.99e-11!130;UBERON:0000077!6.63e-11!97;UBERON:0001041!1.23e-10!92;UBERON:0001007!2.36e-10!128;UBERON:0001555!2.36e-10!128;UBERON:0007026!2.36e-10!128;UBERON:0004921!2.85e-10!126;UBERON:0004185!2.85e-10!126;UBERON:0005172!3.63e-10!49;UBERON:0005173!3.63e-10!49;UBERON:0002417!3.63e-10!49;UBERON:0000916!3.63e-10!49;UBERON:0003929!1.13e-08!55;UBERON:0002368!3.14e-08!60;UBERON:0002530!3.37e-08!65;UBERON:0009569!8.96e-08!66;UBERON:0005911!1.39e-07!69|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.12e-26,22;UBERON:0007499,3.12e-26,22;UBERON:0006925,3.12e-26,22;UBERON:0009497,3.12e-26,22;UBERON:0000015,3.12e-26,22;UBERON:0002423,3.12e-26,22;UBERON:0006235,3.12e-26,22;UBERON:0008835,3.12e-26,22;UBERON:0003894,3.12e-26,22;UBERON:0004161,3.12e-26,22;UBERON:0008836,3.12e-26,22;UBERON:0009854,6.11e-25,23;UBERON:0009856,6.11e-25,23;UBERON:0002365,1.15e-22,25;UBERON:0002330,1.15e-22,25;UBERON:0005172,1.36e-14,49;UBERON:0005173,1.36e-14,49;UBERON:0002417,1.36e-14,49;UBERON:0000916,1.36e-14,49;UBERON:0005256,4.59e-11,45;UBERON:0003914,1.89e-10,47;UBERON:0009569,8.74e-10,66;UBERON:0003929,1.91e-08,55;UBERON:0001041,2.38e-08,80;UBERON:0005631,4.38e-08,3;UBERON:0000478,4.38e-08,3;UBERON:0000158,4.38e-08,3;UBERON:0005177,1.60e-07,79;UBERON:0002368,1.81e-07,60;UBERON:0003104,2.70e-07,61;UBERON:0009142,2.70e-07,61|phase1_expression=0,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0.666219523631325,1.41732687172878,0,4.88966356305268,4.66189074259512,3.39511721438424,0.255129870453209,0,0,0,0.22940928106717,0,0,0,0.190023419456374,0.252030129759931,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.5368259999053,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142371680799103,0,0,0,229.86253954043,86.90281157512,0,2.15881276655127,6.49776417447669,3.13618820968135,3.93244376368905,0,0,0,0,0,0,0,0,0,0,4.5673551887624,5.43769555659061,0.148442139064825,0,0,0,0.150722640552623,0,0.251333182659351,1.23597483867187,0.289198713839823,0,0.161766849947409,0,0,0,0,0,0.766371165625774,0,0,0,0,0,0,0,0,0,0,0.101839363850316,0.248813941220186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278047249225598,0.696504333044333,0.411564272815887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0810688095458557,0,0,0,0,0,0,1.05780226665418,0,0,0,0,0,0,0.474529061544512,0.164698954724011,0.502670417600539,0,0.38992817423824,0,0.216138049874694,0.796565093017469,0,0,0,0,0,0,0,0,0.156998727841375,0,17.1942523710546,0,0,0.674586337154561,0.405720242777006,0.482354319504834,0.763877555344259,1.43848068725405,3.40483976227574,3.56929837144506,10.0637744569148,10.4199465347181,13.7296576170407,8.5876818502018,13.0960111870996,8.20153986317724,0.184753190166605,0,0,0,0,0,0.238043640886014,0,0.157635144106191,0.44292937929755,0,0,0.518054945597687,0,0,0,0,0.551873492609465,0,0,0,0,0,0.390438744296638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0.356497378384721,0,0,0,0,0,0,0,0,0,0,0,1.17335854031855,3.81297727554876,0,2.4732937941222,0.645857706783622,1.02531972377865,1.07435109602823,0.656563598980245,0.874442509889552,0,2.22132145037209,0,0.185194527369712,0.565105371014073,1.77702496037333,1.37266903923914,0,0,0,0,0,0.406638934253697,0,0.627264888043406,0.218362563746178,0.134864346384821,1.1571483801547,0.523511883968059,0.129614973291793,0,0,0,0,0,0,0,0,0.13020438484395,0,0,0,0.632022241256357,0.202725215290164,0,0,0.358053391334963,0.596044064343795,0.120195449519969,0.443068581523732,0.302899349844443,0.381034033274999,0.302478555410522,0.38983152295901,0.288635524920988,0.350630706544707,0.226730383615211,0,0,0.335769232728157,0,0.187682475451182,0,0,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209613162627982,0,0.222246727801615,0,0,0,0,0,0.468207537349412,0.192075457214608,0.287177344778066,0,0.115884325944855,0.192909220463705,0,0.147198920134397,0,0,0.238436189947321,0,0,0.169229215783353,0,0,0.271608227691724,0,0,0.197008964751127,0,0,0.385813221962283,0.249810577937946,0.467863216890817,0.859484216193193,0.191288332068843,0,0.463735671240843|short_description=p3@Dnase1l3}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:13421 | |||
|HGNC= | |||
|MCL_coexpression_id=26 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:O55070 | |||
|association_with_transcript=31bp_to_NM_007870,uc007sem.1_5end | |||
|cluster_id=chr14:8826649..8826664,- | |||
|description=CAGE_peak_3_at_Dnase1l3_5end | |||
|id=chr14:8826649..8826664,- | |||
|ontology_enrichment_celltype=CL:0000414!5.78e-07!11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,3.88e-09,5;CL:0000553,2.64e-07,6;CL:0000556,2.64e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005057!1.16e-14!51;UBERON:0002107!2.16e-14!22;UBERON:0007499!2.16e-14!22;UBERON:0006925!2.16e-14!22;UBERON:0009497!2.16e-14!22;UBERON:0000015!2.16e-14!22;UBERON:0002423!2.16e-14!22;UBERON:0006235!2.16e-14!22;UBERON:0008835!2.16e-14!22;UBERON:0003894!2.16e-14!22;UBERON:0004161!2.16e-14!22;UBERON:0008836!2.16e-14!22;UBERON:0002405!1.23e-13!70;UBERON:0009854!2.01e-13!23;UBERON:0009856!2.01e-13!23;UBERON:0002365!3.72e-13!25;UBERON:0002330!3.72e-13!25;UBERON:0004119!1.99e-11!130;UBERON:0000925!1.99e-11!130;UBERON:0006595!1.99e-11!130;UBERON:0000077!6.63e-11!97;UBERON:0001041!1.23e-10!92;UBERON:0001007!2.36e-10!128;UBERON:0001555!2.36e-10!128;UBERON:0007026!2.36e-10!128;UBERON:0004921!2.85e-10!126;UBERON:0004185!2.85e-10!126;UBERON:0005172!3.63e-10!49;UBERON:0005173!3.63e-10!49;UBERON:0002417!3.63e-10!49;UBERON:0000916!3.63e-10!49;UBERON:0003929!1.13e-08!55;UBERON:0002368!3.14e-08!60;UBERON:0002530!3.37e-08!65;UBERON:0009569!8.96e-08!66;UBERON:0005911!1.39e-07!69 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,3.12e-26,22;UBERON:0007499,3.12e-26,22;UBERON:0006925,3.12e-26,22;UBERON:0009497,3.12e-26,22;UBERON:0000015,3.12e-26,22;UBERON:0002423,3.12e-26,22;UBERON:0006235,3.12e-26,22;UBERON:0008835,3.12e-26,22;UBERON:0003894,3.12e-26,22;UBERON:0004161,3.12e-26,22;UBERON:0008836,3.12e-26,22;UBERON:0009854,6.11e-25,23;UBERON:0009856,6.11e-25,23;UBERON:0002365,1.15e-22,25;UBERON:0002330,1.15e-22,25;UBERON:0005172,1.36e-14,49;UBERON:0005173,1.36e-14,49;UBERON:0002417,1.36e-14,49;UBERON:0000916,1.36e-14,49;UBERON:0005256,4.59e-11,45;UBERON:0003914,1.89e-10,47;UBERON:0009569,8.74e-10,66;UBERON:0003929,1.91e-08,55;UBERON:0001041,2.38e-08,80;UBERON:0005631,4.38e-08,3;UBERON:0000478,4.38e-08,3;UBERON:0000158,4.38e-08,3;UBERON:0005177,1.60e-07,79;UBERON:0002368,1.81e-07,60;UBERON:0003104,2.70e-07,61;UBERON:0009142,2.70e-07,61 | |||
|phase1_expression=0,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0.666219523631325,1.41732687172878,0,4.88966356305268,4.66189074259512,3.39511721438424,0.255129870453209,0,0,0,0.22940928106717,0,0,0,0.190023419456374,0.252030129759931,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.5368259999053,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142371680799103,0,0,0,229.86253954043,86.90281157512,0,2.15881276655127,6.49776417447669,3.13618820968135,3.93244376368905,0,0,0,0,0,0,0,0,0,0,4.5673551887624,5.43769555659061,0.148442139064825,0,0,0,0.150722640552623,0,0.251333182659351,1.23597483867187,0.289198713839823,0,0.161766849947409,0,0,0,0,0,0.766371165625774,0,0,0,0,0,0,0,0,0,0,0.101839363850316,0.248813941220186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278047249225598,0.696504333044333,0.411564272815887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0810688095458557,0,0,0,0,0,0,1.05780226665418,0,0,0,0,0,0,0.474529061544512,0.164698954724011,0.502670417600539,0,0.38992817423824,0,0.216138049874694,0.796565093017469,0,0,0,0,0,0,0,0,0.156998727841375,0,17.1942523710546,0,0,0.674586337154561,0.405720242777006,0.482354319504834,0.763877555344259,1.43848068725405,3.40483976227574,3.56929837144506,10.0637744569148,10.4199465347181,13.7296576170407,8.5876818502018,13.0960111870996,8.20153986317724,0.184753190166605,0,0,0,0,0,0.238043640886014,0,0.157635144106191,0.44292937929755,0,0,0.518054945597687,0,0,0,0,0.551873492609465,0,0,0,0,0,0.390438744296638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0.356497378384721,0,0,0,0,0,0,0,0,0,0,0,1.17335854031855,3.81297727554876,0,2.4732937941222,0.645857706783622,1.02531972377865,1.07435109602823,0.656563598980245,0.874442509889552,0,2.22132145037209,0,0.185194527369712,0.565105371014073,1.77702496037333,1.37266903923914,0,0,0,0,0,0.406638934253697,0,0.627264888043406,0.218362563746178,0.134864346384821,1.1571483801547,0.523511883968059,0.129614973291793,0,0,0,0,0,0,0,0,0.13020438484395,0,0,0,0.632022241256357,0.202725215290164,0,0,0.358053391334963,0.596044064343795,0.120195449519969,0.443068581523732,0.302899349844443,0.381034033274999,0.302478555410522,0.38983152295901,0.288635524920988,0.350630706544707,0.226730383615211,0,0,0.335769232728157,0,0.187682475451182,0,0,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209613162627982,0,0.222246727801615,0,0,0,0,0,0.468207537349412,0.192075457214608,0.287177344778066,0,0.115884325944855,0.192909220463705,0,0.147198920134397,0,0,0.238436189947321,0,0,0.169229215783353,0,0,0.271608227691724,0,0,0.197008964751127,0,0,0.385813221962283,0.249810577937946,0.467863216890817,0.859484216193193,0.191288332068843,0,0.463735671240843 | |||
|short_description=p3@Dnase1l3 | |||
}} |
Revision as of 21:25, 4 August 2015
Short description: | p3@Dnase1l3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Dnase1l3_5end |
Coexpression cluster: | MCL_coexpression_mm9:26 |
Association with transcript: | 31bp_to_NM_007870, uc007sem.1_5end |
EntrezGene: | 13421 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 3.88e-09 | 5 |
megakaryocyte progenitor cell | 2.64e-07 | 6 |
megakaryocyte | 2.64e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
liver | 3.12e-26 | 22 |
epithelial sac | 3.12e-26 | 22 |
digestive gland | 3.12e-26 | 22 |
epithelium of foregut-midgut junction | 3.12e-26 | 22 |
anatomical boundary | 3.12e-26 | 22 |
hepatobiliary system | 3.12e-26 | 22 |
foregut-midgut junction | 3.12e-26 | 22 |
hepatic diverticulum | 3.12e-26 | 22 |
liver primordium | 3.12e-26 | 22 |
septum transversum | 3.12e-26 | 22 |
liver bud | 3.12e-26 | 22 |
digestive tract diverticulum | 6.11e-25 | 23 |
sac | 6.11e-25 | 23 |
exocrine gland | 1.15e-22 | 25 |
exocrine system | 1.15e-22 | 25 |
abdomen element | 1.36e-14 | 49 |
abdominal segment element | 1.36e-14 | 49 |
abdominal segment of trunk | 1.36e-14 | 49 |
abdomen | 1.36e-14 | 49 |
trunk mesenchyme | 4.59e-11 | 45 |
epithelial tube | 1.89e-10 | 47 |
subdivision of trunk | 8.74e-10 | 66 |
gut epithelium | 1.91e-08 | 55 |
foregut | 2.38e-08 | 80 |
extraembryonic membrane | 4.38e-08 | 3 |
extraembryonic structure | 4.38e-08 | 3 |
membranous layer | 4.38e-08 | 3 |
trunk region element | 1.60e-07 | 79 |
endocrine gland | 1.81e-07 | 60 |
mesenchyme | 2.70e-07 | 61 |
entire embryonic mesenchyme | 2.70e-07 | 61 |