FFCP PHASE1:Mm9::chr4:106926046..106926096,-: Difference between revisions
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{{FFCP|EntrezGene=77809|HGNC=|UniProt=Q8R2U7|association_with_transcript=40bp_to_ENSMUST00000030360_5end|description=CAGE_peak_1_at_Lrrc42_5end|id=chr4:106926046..106926096,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002370!4.55e-10!23;UBERON:0000974!4.55e-10!23;UBERON:0004807!4.55e-10!23;UBERON:0005058!4.55e-10!23;UBERON:0003351!4.55e-10!23;UBERON:0009113!4.55e-10!23;UBERON:0003295!4.55e-10!23;UBERON:0009722!4.55e-10!23;UBERON:0005562!4.55e-10!23;UBERON:0007690!4.55e-10!23;UBERON:0006562!6.46e-09!24;UBERON:0001557!6.46e-09!24;UBERON:0001042!6.46e-09!24;UBERON:0008814!6.46e-09!24;UBERON:0009145!6.46e-09!24;UBERON:0003408!8.22e-09!24;UBERON:0000153!1.04e-07!94;UBERON:0000072!1.79e-07!27|ontology_enrichment_uberon_v019_2=UBERON:0000153,1.06e-11,43;UBERON:0002370,4.55e-10,23;UBERON:0000974,4.55e-10,23;UBERON:0004807,4.55e-10,23;UBERON:0005058,4.55e-10,23;UBERON:0003351,4.55e-10,23;UBERON:0009113,4.55e-10,23;UBERON:0003295,4.55e-10,23;UBERON:0009722,4.55e-10,23;UBERON:0005562,4.55e-10,23;UBERON:0007690,4.55e-10,23;UBERON:0007811,6.12e-10,36;UBERON:0006562,6.46e-09,24;UBERON:0001557,6.46e-09,24;UBERON:0001042,6.46e-09,24;UBERON:0008814,6.46e-09,24;UBERON:0009145,6.46e-09,24;UBERON:0003408,8.22e-09,24;UBERON:0000072,1.79e-07,27|phase1_expression=19.6983081938897,16.40184415905,27.7549536027617,6.95667686005709,11.520601788766,17.2915650069246,9.57811826441655,12.7832090207161,20.27357598984,25.2789688427753,17.977886663678,23.7721033806103,11.8128503652532,15.9105132402575,5.3297561890506,4.85940641735582,4.89693314689703,6.78243655520211,5.75880621144103,11.8829102503448,13.0116233931137,6.7517846816602,3.13439746966722,3.83981814704176,10.3234176480227,25.8404383851759,22.3996238002719,16.8067561494993,17.29213117053,17.3900789534352,14.8559442139054,10.1604907753541,13.5314253268605,15.8481681015439,12.1317680295535,16.2909952451323,14.0876855821035,2.09265815368454,2.3440060335714,4.18818995179039,1.76469446409304,0.683045484958446,0.485510353031154,13.7227531593379,11.2528393653661,10.0950713688925,15.6478268869608,27.2531445475558,27.460772841809,29.5533446592911,24.3576373628131,25.8754615856949,6.54352163625172,8.70434570413613,9.41062637598899,16.9791227783725,16.0458726365704,13.4074743992135,15.9830004079082,10.5798195854407,15.8457850876545,21.6860500524245,18.6751907183339,12.1486461832989,7.9109309005358,8.5257613793532,18.2756067416227,15.7529505181837,16.5903379693564,18.765825428105,17.0363218694619,16.5677570954206,19.8781686856452,14.9438775042244,20.5109307979026,14.7075005857603,13.2139057199266,7.2781782708557,6.45147439676223,15.9582408153535,18.6634792948916,16.1483144872596,6.97957497503452,7.31591393041184,7.63991238884051,15.0260578591571,13.5253096759148,15.4711540034999,5.45228591998925,4.60986516651392,12.1743085254705,12.9063581547208,10.879541339324,8.09554787456726,12.3457519315057,9.85659151614138,8.84799846830037,16.1908806449155,25.718814455684,16.2536204274756,14.6477156567748,8.98285341900225,22.9324715735981,14.2213340630666,10.1750789275271,7.34743609877786,10.6160133453104,7.19358442230078,3.88406825470758,5.78924342352817,17.6955033301459,14.6143429589828,8.53277339847416,13.565037649736,9.40709657085639,7.1629957057915,9.88779870937496,4.77177877835708,3.5384422077995,10.0295446967394,4.41683036920787,6.78825354389311,13.0474232852686,8.19786231632332,8.3778682725382,7.15279754584056,6.70964697233154,5.39912457894067,4.3203877204842,6.29120685500255,6.8625090422794,16.3350657746724,9.56033761057521,10.9957646652042,6.02585329222724,10.3834408363365,14.0538322113436,6.22034853050465,3.79084137650512,5.26104639716185,17.3060189140396,25.9789378009824,22.3277040958633,20.646560043493,19.5264752564311,17.8078071195941,20.3332742294612,11.3829483125167,16.383167462896,15.3175924935934,19.0027214097065,17.535658594206,17.7950239504383,13.5818344943645,18.7261744131229,18.7092210809384,8.42655824775882,4.11756651383544,4.83077948972507,15.3273071676271,15.0096678387902,19.4467026377896,11.3637473080901,12.199382368339,15.4267112887378,12.556833016522,12.3405764643825,9.10769670463922,10.0381508447223,6.40253109908471,4.45878452502207,6.14039947186396,3.95190207523891,6.1734952629771,9.2527577368216,10.8049842998249,4.29544417878937,5.55346189993443,17.4896365438892,18.1144604051142,11.5980715189884,10.8909103296605,10.0070119730192,8.75037880117772,7.11793592316767,12.6818195137488,10.8074139784116,10.7436494902221,8.38345574612217,8.98819408654222,11.0230405436094,9.55878111620963,16.1217715810119,17.3657739166788,4.50830942692322,12.4227309985642,14.5464365375719,10.2398297039865,13.0899631847213,6.6424566590821,6.75094529717912,12.0929220643365,13.933273473096,8.17541018008861,7.27268281918851,7.42044970870017,5.88294352026658,10.8529721888588,12.9859184408524,8.0554918486227,7.94462611197673,13.7280706594041,23.0029130443767,13.7692150637346,15.601883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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:77809 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8R2U7 | |||
|association_with_transcript=40bp_to_ENSMUST00000030360_5end | |||
|cluster_id=chr4:106926046..106926096,- | |||
|description=CAGE_peak_1_at_Lrrc42_5end | |||
|id=chr4:106926046..106926096,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002370!4.55e-10!23;UBERON:0000974!4.55e-10!23;UBERON:0004807!4.55e-10!23;UBERON:0005058!4.55e-10!23;UBERON:0003351!4.55e-10!23;UBERON:0009113!4.55e-10!23;UBERON:0003295!4.55e-10!23;UBERON:0009722!4.55e-10!23;UBERON:0005562!4.55e-10!23;UBERON:0007690!4.55e-10!23;UBERON:0006562!6.46e-09!24;UBERON:0001557!6.46e-09!24;UBERON:0001042!6.46e-09!24;UBERON:0008814!6.46e-09!24;UBERON:0009145!6.46e-09!24;UBERON:0003408!8.22e-09!24;UBERON:0000153!1.04e-07!94;UBERON:0000072!1.79e-07!27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000153,1.06e-11,43;UBERON:0002370,4.55e-10,23;UBERON:0000974,4.55e-10,23;UBERON:0004807,4.55e-10,23;UBERON:0005058,4.55e-10,23;UBERON:0003351,4.55e-10,23;UBERON:0009113,4.55e-10,23;UBERON:0003295,4.55e-10,23;UBERON:0009722,4.55e-10,23;UBERON:0005562,4.55e-10,23;UBERON:0007690,4.55e-10,23;UBERON:0007811,6.12e-10,36;UBERON:0006562,6.46e-09,24;UBERON:0001557,6.46e-09,24;UBERON:0001042,6.46e-09,24;UBERON:0008814,6.46e-09,24;UBERON:0009145,6.46e-09,24;UBERON:0003408,8.22e-09,24;UBERON:0000072,1.79e-07,27 | |||
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| |||
|short_description=p1@Lrrc42 | |||
}} |
Revision as of 12:11, 4 August 2015
Short description: | p1@Lrrc42 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Lrrc42_5end |
Coexpression cluster: | NA |
Association with transcript: | 40bp_to_ENSMUST00000030360_5end |
EntrezGene: | 77809 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
anterior region of body | 1.06e-11 | 43 |
thymus | 4.55e-10 | 23 |
neck | 4.55e-10 | 23 |
respiratory system epithelium | 4.55e-10 | 23 |
hemolymphoid system gland | 4.55e-10 | 23 |
pharyngeal epithelium | 4.55e-10 | 23 |
thymic region | 4.55e-10 | 23 |
pharyngeal gland | 4.55e-10 | 23 |
entire pharyngeal arch endoderm | 4.55e-10 | 23 |
thymus primordium | 4.55e-10 | 23 |
early pharyngeal endoderm | 4.55e-10 | 23 |
craniocervical region | 6.12e-10 | 36 |
pharynx | 6.46e-09 | 24 |
upper respiratory tract | 6.46e-09 | 24 |
chordate pharynx | 6.46e-09 | 24 |
pharyngeal arch system | 6.46e-09 | 24 |
pharyngeal region of foregut | 6.46e-09 | 24 |
gland of gut | 8.22e-09 | 24 |
segment of respiratory tract | 1.79e-07 | 27 |