FFCP PHASE1:Hg19::chr8:92082319..92082348,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc003yet.2_5end | |||
|coexpression_cluster_id=C2931 | |||
|description=CAGE_peak_2_at_uc003yet.2_5end | |||
|id=chr8:92082319..92082348,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;4.14e-08;82 | |||
|ontology_enrichment_disease=DOID:162!1.61e-07!235;DOID:14566!3.81e-07!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.59e-07,235;DOID:14566,3.76e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.24e-28!115;UBERON:0000073!8.37e-16!94;UBERON:0001016!8.37e-16!94;UBERON:0001049!3.09e-15!57;UBERON:0005068!3.09e-15!57;UBERON:0006241!3.09e-15!57;UBERON:0007135!3.09e-15!57;UBERON:0005743!3.09e-15!86;UBERON:0001017!5.25e-15!82;UBERON:0000955!7.66e-13!69;UBERON:0006238!7.66e-13!69;UBERON:0004121!1.17e-12!169;UBERON:0000924!1.31e-12!173;UBERON:0006601!1.31e-12!173;UBERON:0002616!1.35e-12!59;UBERON:0003080!2.68e-12!42;UBERON:0002780!4.35e-12!41;UBERON:0001890!4.35e-12!41;UBERON:0006240!4.35e-12!41;UBERON:0000033!4.61e-11!123;UBERON:0003075!1.18e-10!86;UBERON:0007284!1.18e-10!86;UBERON:0002346!1.81e-10!90;UBERON:0000153!2.88e-10!129;UBERON:0007811!2.88e-10!129;UBERON:0002020!4.08e-09!34;UBERON:0003528!4.08e-09!34;UBERON:0001893!2.31e-08!34;UBERON:0002791!2.93e-08!33;UBERON:0001869!1.05e-07!32;UBERON:0003056!1.19e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;7.38e-09;53!UBERON:0002616;7.38e-09;53!UBERON:0002780;9.43e-09;41!UBERON:0001890;9.43e-09;41!UBERON:0007023;1.10e-08;114!UBERON:0003528;1.15e-07;34!UBERON:0002020;1.15e-07;34!UBERON:0002791;2.84e-07;32!UBERON:0001893;3.62e-07;34!UBERON:0001017;5.15e-07;75!UBERON:0001869;6.29e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,8.39e-28,114;UBERON:0001016,2.42e-15,89;UBERON:0001049,5.10e-15,56;UBERON:0005068,5.10e-15,56;UBERON:0006241,5.10e-15,56;UBERON:0007135,5.10e-15,56;UBERON:0001017,8.50e-15,81;UBERON:0000073,8.08e-14,53;UBERON:0002616,8.08e-14,53;UBERON:0000955,1.22e-12,68;UBERON:0006238,1.22e-12,68;UBERON:0004121,1.90e-12,171;UBERON:0000924,1.90e-12,171;UBERON:0006601,1.90e-12,171;UBERON:0002780,4.34e-12,41;UBERON:0001890,4.34e-12,41;UBERON:0003080,4.34e-12,41;UBERON:0006240,4.34e-12,41;UBERON:0003075,4.96e-11,82;UBERON:0007284,4.96e-11,82;UBERON:0002346,8.09e-11,86;UBERON:0011216,2.18e-10,223;UBERON:0010371,1.52e-09,104;UBERON:0003528,4.08e-09,34;UBERON:0002020,4.08e-09,34;UBERON:0001893,2.31e-08,34;UBERON:0002791,4.22e-08,32;UBERON:0010314,4.66e-08,132;UBERON:0003056,1.02e-07,61;UBERON:0001869,1.05e-07,32 | |||
|phase1_expression=4.54195948176392,5.78071414505655,9.44394507443007,5.00366491765652,5.81049422755474,3.48935409640147,2.53299878168311,4.42203911398782,3.3954131665979,1.22866968250754,0,5.24259293112413,2.90143676051299,5.19818682432196,2.98257638155124,4.70627602516243,7.8350288643117,5.11217063271161,2.92759679274304,1.84681587115182,1.83600622119828,2.19418305034661,9.73202356245593,4.92747930262383,5.77496142136093,4.58480434487708,5.00813595644669,6.29686250509434,4.32700704533794,3.45446458287491,2.16742572642506,4.59710612239464,1.8072355126695,3.32778609150109,7.82418725861046,6.68195392690881,4.9912074686924,1.66198622559563,2.00544447470142,0.868043482863407,2.01523926815932,7.12566065241755,4.63636021741536,3.63495596948912,2.26725566213286,4.12392904019288,4.18372266430232,6.57868620834921,3.71647645074124,5.46615545412086,3.58624989140741,5.91205574721463,6.55016793399575,3.22742341791913,6.77132432971709,3.76484679085209,7.64137220161968,9.88783331558372,4.28517449319264,8.34415470397843,3.83602275479425,4.61791820261403,4.58766412529753,2.55734850319616,3.48251086354301,5.10646702222026,6.85104473895132,5.27622197039161,5.73631210262222,8.47036494349955,5.44859552370032,10.6800514436394,7.27863491114034,1.47878700418359,0.850417199860174,2.51590374610051,2.69588714751588,1.20141514273205,4.17886525412408,0.570025487482497,0.79566670879636,0.91332076882317,1.75996244461323,4.36910889009705,1.77901850772711,4.26730222566507,9.20910770182829,2.87376219977242,8.59358334620321,2.86216126360609,2.27685187643779,1.76171156811282,1.14681968437569,0,2.80254281490768,3.68737718685108,1.7703879310245,0.786021525498329,2.05601498999509,6.68745981562712,3.2592226663359,6.15482147455153,3.89653456815823,5.68193330114385,3.53527088969805,6.42448294292501,8.6657236404805,4.35510487067296,6.89314542067355,3.61763390128087,4.14525026678773,6.66547097190621,5.04174314751005,6.1534390460634,4.18142095219907,3.73920830901968,2.29932296161153,5.49803912772208,10.1207876807801,6.37130828648194,6.51083453856419,5.70271226669025,7.52875595388864,12.6706745042874,11.2437653897111,7.34009481336452,8.21127996921047,3.62892137804518,1.60464117470104,1.30341963494519,2.43806866313962,4.69490601792545,3.70801429346238,9.75885711438329,1.00267582127178,5.5041677205113,4.7717156823066,3.89307896242109,7.84638982461763,4.65631734671384,5.35792192728069,5.6975897841505,1.82147644146271,0.370784442784429,16.2273696827342,18.6318818910216,10.9025527625469,3.81584998888547,3.43196946468077,2.60020250930695,0.993812036833525,3.4409383804245,1.04142150482278,0,1.67799774483962,3.02629846134074,2.71693456497854,2.84258435086262,2.49036383880697,5.69025041699939,2.81980521976403,3.80136052859256,3.1728067481262,6.61793544622564,0.81014194788176,7.14397826272638,6.73588117878509,4.16662477788292,1.53316637465883,0.949265659568129,1.28241220751285,2.63560834872127,0,1.3082821564276,2.98183171017191,5.69837302490609,2.1185468930115,2.86836620748814,4.61068896857864,3.92474320099615,4.2699598291882,5.42668606517752,5.60179863719579,4.31074150623002,5.88462851208451,4.54072282934794,5.18558332031999,6.32667865951251,2.49728061464256,5.70471821544449,2.83952493048422,5.98915943083201,5.82742599725274,6.32028630160118,5.30800845262722,5.15904132709426,5.26961483996404,5.94001428641027,6.42894016124248,1.82032272387605,0.718618141816238,5.05008341862199,7.13175563270196,9.97430815743058,6.14568669233173,4.29082914118628,4.8076178850111,7.14622753908133,2.87023417102179,8.5422955527427,8.05341224406335,0.600182192168805,7.4197821051676,2.31876486041066,6.14185625894246,4.55696097051419,8.67189345934668,1.51460264546469,7.36399189138395,6.95078044320891,1.06502877754984,8.96693674225998,4.74769658469365,5.60456474173561,6.00041465299836,9.17774705244812,6.22065901260936,6.49395864775278,7.78499417225773,7.56725701612204,4.28945446488568,7.66452454059243,1.56449532329816,4.5026865673502,4.14404764057442,6.96551892047969,5.0531563716871,4.37735160147422,7.92348043367078,2.89213235860178,4.96322877295773,7.1900216550494,6.40630671599961,3.64044532032444,3.72820783738158,2.69323009862473,2.21446636387394,0,1.2347220339942,0,8.87285243752816,5.89696330006576,5.31710916013264,8.38779888887836,5.16551441881077,6.34800898104545,9.8775256867763,0,5.12697759299317,6.5737796062556,4.88712457965487,3.11980435583874,4.3299402607582,5.91245065372892,9.62751292733738,1.87676382089396,2.31492756288305,3.80508304469197,2.37061319387782,1.71697232418975,2.46217006087397,3.27605971194933,2.97262324577457,9.3733833986777,17.1341770762837,9.78248170972467,12.1799590875874,6.1033127087932,2.68367875415648,166.027511170933,10.4777636475739,12.2323588169056,12.5384359472756,19.1888498808098,9.8421736152862,3.4378958300245,0,0,8.02054443085923,3.30377363628309,8.28896654628677,3.81245686774226,3.48768055066624,10.1206834432911,6.46358578788889,3.57656445851882,5.071816515336,7.1803291477915,7.28052058379563,3.85811061393213,1.41849132023278,2.39779961114489,9.57952557509589,8.13932408087165,2.46972101034231,8.14340460734338,3.55391948742546,2.37585561880029,7.53598442648965,1.74306691720059,3.99891964728228,2.43247561282381,3.51579964002488,4.21667878966063,6.70949595376431,3.44585807502342,5.70547620162874,7.09428402671138,3.90405012845728,6.80431660311603,3.47463946379935,4.13764596424047,1.50939302401662,3.7219480521127,18.2948129440174,23.4251736943719,11.5993321916654,7.203199409377,7.65526501983796,2.24702107184155,0,2.90090859405225,7.85225547002495,2.00068208423871,4.34024037919577,3.53550464602372,4.99601168632053,6.93890626149313,3.63138386477411,3.91229929646035,0,8.27784570340039,7.97070718242524,2.02806085395873,7.21134000085088,3.52442083432933,5.49029478097369,2.48121631347465,2.5885704098234,2.66818894508611,5.15316871458641,3.32870879020994,1.81434175997808,8.68377327365719,2.76231551918512,5.61320188866147,9.09787959715477,5.62877973973374,5.46903331888265,4.45254199334973,4.00945203886904,2.30830242907065,6.57017248110473,9.8658341544888,5.11325665223821,4.3509401852984,8.22076528243468,16.1141730637819,8.26664026785169,5.64482620820823,5.24497659837697,4.51199612907412,6.31525764256201,3.13739907670742,0,7.17751076471555,0,1.87103075804167,5.39789790255348,3.08454505380579,2.70946437543853,3.01013864312912,3.82314409567557,0.831076008928724,2.0148727924996,22.1452475412394,17.5161752186683,6.92415337814251,3.28014645699706,18.5465684958653,13.8074955607948,3.75434805755208,6.02319349420292,1.14853107599234,3.25030123018261,4.82051789532479,5.51023094265095,5.08360436478326,4.45160656705776,5.37562632689669,6.44521469209642,3.62541734785571,3.83519823372454,6.41030656656509,21.3217540815662,12.4923543787319,9.06050258711547,14.5667204431992,11.6211387324321,3.1481234683064,4.1822236209636,2.15623506123262,3.19383618190213,4.34966496037536,2.03856641014312,4.8662461492277,4.83805880167568,6.96034734381197,4.95638504201945,2.81487570442467,8.98671874871233,0.636406495851874,1.56989728039846,8.63387796399911,4.11805544604082,5.1837457032102,2.62837226045311,3.17020642346017,0.842516912477962,3.41343617362713,4.6305563029944,1.05650146756755,8.87249424151907,6.08043357400965,1.13008116620243,2.75682671773062,5.30751180192976,1.31535265576129,1.73632660280006,2.62357900818653,3.24656603140326,4.02770547529675,2.81695602532241,7.88762437122283,6.87743287091848,2.85336841185,5.32141596105897,3.58882980006029,2.63435914367922,4.55367808518858,3.49934720244983,10.1995439489043,2.68120910214315,1.08890984861323,11.2031122924367,1.72202149068492,0,1.33029046061003,5.05391480455311,10.6563997938756,6.117097657139,3.98753031021914,5.47933083552915,7.4045209155515,10.3755729790835,11.8806916192385,6.34500141035416,2.67060177818683,7.69983884210687,3.18552280775341,16.536482586189,6.05930694501068,9.17729779194542,6.05819836369525,7.78359548587985,4.21311814291207,8.04359614350755,2.59697552219644,2.80797178113459,2.28234679033192,4.23035718587163,0,4.23229444504008,6.74469915435538,5.65039180134933,4.68430861459359,7.55711758462682,6.14481528616916,7.38131156044973,7.34136223532397,6.25241905286529,14.4771210425526,14.7704878737255,14.8750623161791,2.99764771198038,16.9184406105419,12.5384162073507,8.93699893558553,4.97578139173005,5.34928244531896,1.70481688083848,8.83354593529453,11.8785872333055,14.7437137007631,21.8712482508586,20.1157265467033,7.12375712146598,6.59215496907038,2.53350489753592,3.58646378851925,5.8019622261541,15.1159648712566,7.4656138226573,6.27732507851454,4.97663340258892,11.4132805957105,18.4391809915877,4.60415133204185,11.4426350538843,7.18449277040819,13.3364388173564,7.75466196876175,16.8837938654569,0,6.51069402713083,12.1569399994712,9.42499448065232,5.46208551770398,10.9329069625889,3.30942754475111,14.4792216761415,11.0809753085637,7.46587478213157,18.6005691020906,20.5013945663194,24.4130778107333,26.3178638636315,13.5951904718632,17.9896025666257,4.03072315020264,8.92311963383061,11.773389551081,10.1408429703831,2.99733075704478,5.29570102017656,3.91130538919229,7.65602783356607,4.76307485689684,9.06159119231679,13.2851287654457,8.00599307614626,8.47679577690798,9.70061340653877,8.62675150998054,11.5796895013331,7.40039557624322,16.370467634979,5.06395354867265,7.99840759979824,3.8165329287164,5.40971599355228,0.995261931078505,6.89969003126046,7.33236173920351,13.343450790628,5.18968543575312,4.69898772774549,8.76214728748802,4.01288823649394,16.6327756464991,5.10873409803865,24.4580773665112,2.67058417487502,20.9129733510177,2.41981432097328,4.59109142445735,3.09614240179591,13.6794311667188,13.0647121160531,14.6223851995581,8.27479889688747,16.0105788387685,11.9472429772959,5.97680046662565,6.93373365065693,4.85967267338367,9.60325494660901,12.101229714676,10.1341467580377,7.91135749369436,3.19295893253981,3.14284063470598,3.28461828212837,8.34105541800407,4.58931858795801,10.8470755574656,3.83717389010903,9.33958675004052,16.2708745606608,7.43095254392251,12.9857288807485,5.76323085796252,4.19600180122473,5.18725501754782,4.35239065430479,15.6151448054388,17.1425209605898,16.8983448368988,7.07082103850386,5.02845562472372,6.17156793242766,10.0978235459959,23.9828989618261,28.8201738580699,24.5060628216668,0,6.44648162129936,2.89176089707246,14.243402464885,13.2913045926777,10.7680953686522,9.38491302345258,17.1690419254628,13.6134589039542,7.86046628094697,7.56629755439048,12.8145544480199,5.90873867304177,4.94495150286999,6.20112603458501,23.524168082025,6.43517323699962,24.6521203840884,17.8426462006164,4.98334760241559,6.18927464687552,8.3088067605837,10.348799011369,2.32140586367385,6.50020256240864,7.37956312718385,16.1551699963356,3.19972987623488,5.70241817204795,3.22717210799121,26.292382032764,10.0057345692271,21.1869430516938,2.5426853765475,4.3439968140297,5.18532894720761,5.87857248196936,4.7892076624995,12.7243407161475,12.0975495467649,4.07923529472452,10.5517608248219,1.32506888912221,22.8830832759944,22.611774898,11.8049918140187,13.3914854240168,7.47511887973863,22.3230113241526,13.6698888264575,4.96166021811951,7.11401874832599,8.16010409152003,54.2590069104655,4.35214242695579,8.7741462907945,5.82056595850577,8.85256102916472,18.0612210687769,20.3795681392407,22.0867539472553,20.280930774453,26.3768230017433,23.6278879773495,10.0596172765041,13.9732121285593,12.4980407962107,20.9275782207474,9.70582134052889,8.23430368943601,13.1133773625927,17.8252865191315,5.22391810104059,8.64739246434731,2.77402930751307,5.68209015825267,2.26411111577318,6.22867855117575,13.2727239670216,3.32708032279126,6.68379962505956,9.90629504930547,4.77890301491107,11.2450778040901,4.34736279253526,7.4647117411354,6.11435943483388,5.73919567992907,4.65798587891377,3.42724690951916,10.5786390633212,5.09176245767166,5.80017008029438,5.56840511854192,3.18476710958893,11.6008051752315,6.52451839847306,3.70424437642511,8.83294287600557,10.5940906724017,5.36103978437314,5.21988583930423,4.98753036126999,5.55653938377201,5.87368090815522,6.98446480217801,3.39681591877069,3.50854479325931,4.77060694053879,5.78742114812744,3.20990637240838,9.73717770634198,6.56317649289277,6.38105907972503,20.7387654227596,5.26122833866349,9.03480914130869,7.19687734725715,26.8640076054058,4.42391235756695,9.08642130442096,2.59983614611409,13.1230827523793,15.843778128795,4.54012762853469,7.91655586082915,15.5266253568583,3.73246356019784,16.3704795268674,5.28341575843741,13.9966688251748,6.66178792971285,3.05518553917245,8.92814664427068,7.06433856276312,10.6142534414916,6.99609571437521,6.23007785509901,21.6154102037077,8.46422264857641,9.79985527530241,8.60671616292558,9.91876034279095,21.071669395544,15.7939600465381,5.5455773168778,4.70269316756682,14.5328081068666,11.4215536207324,29.6406109873097,6.1344256140825,10.8222873127791,6.81601430286995,5.33934933654034,11.7361187430217,16.3111302135345,11.2063389240393,9.0767280916584,4.68908406739856,1.04762677792569,8.67991162803513,7.24494822463522,8.03697256958896,14.8404838736631,19.2218720746101,6.84890750094194,7.65764732625507,10.4168975702865,7.44316767583941,6.8589785300252,10.8598063493656,23.0351789427663,30.2655349996942,56.4478011940067,66.2496976832276,5.76565406057152,7.02927324090253,5.48761630199739,16.2447661814628,5.19604911146508,7.8007934983419,13.6814624327245,17.6609458913657,24.9813787966443,11.2108865325516,2.73947616152849,9.0689588311821,11.9437921971763,10.9359112590284,3.00225862292181,5.46334699230189,17.7335437748631,5.61197955311177,6.83813341738022,6.99945756085195,7.60385627995501,9.46500189404611,3.78662402337809,5.45365790458609,28.3669323627922,16.0374807980835,2.79185747097888,4.77769469488717,4.3623618401139,11.9743285010596,9.87535192356382,9.06400372063053,9.03432700334974,5.799072156691,4.85710993059139,3.74303141539369,39.5912042571123,2.61624199710651,16.4901279776882,6.59643100472575,21.4367237864676,9.10655065673747,5.90110813360685,13.1688842981226,7.84474629612498,17.6757410326219,26.5016430605176,37.1308000408858,7.6078030965012,6.96701170220049,8.45855261818682,2.51385763096951,3.0981758336728,14.105761149847,23.996851276667,23.9119272733721,4.3820183294791,16.0555249191589,23.2210124705351,5.04868999018191,5.03137027412769,2.18175345170189,8.46442944824641,2.97596014533401,6.00828317220844,3.46101249699031,4.92049056856808,5.24474745425739,3.80095503034311,7.44518457116467,5.07713070004565,7.90296135999666,4.011320628678,13.1097147917554,12.3263499871842,21.5584054259283,26.4788469406452,11.301401040752,6.66580408098473,4.39204586884841,5.15220128655621,8.97054900644907,21.7673281311324,8.48892193624521,6.09606894111492,6.16019941953506,2.35732185551056,10.1128309603674,7.98384855710432,13.5943458580327,10.886189279527,9.653614114347,13.8330811244144,9.38563769613817,4.64517487894893,5.69654649642034,20.6384599997509,7.648404156459,6.73193833836789 | |||
|short_description=p2@uc003yet.2 | |||
}} |
Revision as of 22:52, 22 January 2014
Short description: | p2@uc003yet.2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_uc003yet.2_5end |
Coexpression cluster: | C2931_Mast_malignant_pituitary_occipital_pineal_cerebellum_small |
Association with transcript: | 0bp_to_uc003yet.2_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 8.39e-28 | 114 |
nervous system | 2.42e-15 | 89 |
neural tube | 5.10e-15 | 56 |
neural rod | 5.10e-15 | 56 |
future spinal cord | 5.10e-15 | 56 |
neural keel | 5.10e-15 | 56 |
central nervous system | 8.50e-15 | 81 |
regional part of nervous system | 8.08e-14 | 53 |
regional part of brain | 8.08e-14 | 53 |
brain | 1.22e-12 | 68 |
future brain | 1.22e-12 | 68 |
ectoderm-derived structure | 1.90e-12 | 171 |
ectoderm | 1.90e-12 | 171 |
presumptive ectoderm | 1.90e-12 | 171 |
regional part of forebrain | 4.34e-12 | 41 |
forebrain | 4.34e-12 | 41 |
anterior neural tube | 4.34e-12 | 41 |
future forebrain | 4.34e-12 | 41 |
neural plate | 4.96e-11 | 82 |
presumptive neural plate | 4.96e-11 | 82 |
neurectoderm | 8.09e-11 | 86 |
organ system subdivision | 2.18e-10 | 223 |
ecto-epithelium | 1.52e-09 | 104 |
brain grey matter | 4.08e-09 | 34 |
gray matter | 4.08e-09 | 34 |
telencephalon | 2.31e-08 | 34 |
regional part of telencephalon | 4.22e-08 | 32 |
structure with developmental contribution from neural crest | 4.66e-08 | 132 |
pre-chordal neural plate | 1.02e-07 | 61 |
cerebral hemisphere | 1.05e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.59e-07 | 235 |
disease of cellular proliferation | 3.76e-07 | 239 |