FFCP PHASE1:Mm9::chr7:19608891..19608895,-: Difference between revisions
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{{FFCP|EntrezGene=15377|HGNC=|MCL_coexpression_id=1525|UniProt=P35584|association_with_transcript=-3bp_to_NM_008260,uc009fkd.1,uc009fke.1_5end|description=CAGE_peak_1_at_Foxa3_5end|id=chr7:19608891..19608895,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004119!4.99e-22!130;UBERON:0000925!4.99e-22!130;UBERON:0006595!4.99e-22!130;UBERON:0001007!1.11e-21!128;UBERON:0001555!1.11e-21!128;UBERON:0007026!1.11e-21!128;UBERON:0005409!1.14e-21!59;UBERON:0004921!1.09e-20!126;UBERON:0004185!1.09e-20!126;UBERON:0000160!2.99e-20!43;UBERON:0009854!1.61e-15!23;UBERON:0009856!1.61e-15!23;UBERON:0002107!6.84e-15!22;UBERON:0007499!6.84e-15!22;UBERON:0006925!6.84e-15!22;UBERON:0009497!6.84e-15!22;UBERON:0000015!6.84e-15!22;UBERON:0002423!6.84e-15!22;UBERON:0006235!6.84e-15!22;UBERON:0008835!6.84e-15!22;UBERON:0003894!6.84e-15!22;UBERON:0004161!6.84e-15!22;UBERON:0008836!6.84e-15!22;UBERON:0002365!4.62e-12!25;UBERON:0002330!4.62e-12!25;UBERON:0000466!1.29e-11!79;UBERON:0002108!6.56e-10!16;UBERON:0001041!2.41e-09!92;UBERON:0000077!7.94e-09!97;UBERON:0001045!1.08e-08!13;UBERON:0001264!4.34e-08!12;UBERON:0003922!4.34e-08!12;UBERON:0002114!4.34e-08!12;UBERON:0003923!4.34e-08!12;UBERON:0003924!4.34e-08!12;UBERON:0003921!4.34e-08!12;UBERON:0005177!6.74e-08!85;UBERON:0000344!1.52e-07!15;UBERON:0005172!2.38e-07!49;UBERON:0005173!2.38e-07!49;UBERON:0002417!2.38e-07!49;UBERON:0000916!2.38e-07!49;UBERON:0000949!9.26e-07!72;UBERON:0001242!9.66e-07!13;UBERON:0000060!9.66e-07!13;UBERON:0001262!9.66e-07!13;UBERON:0004786!9.66e-07!13|ontology_enrichment_uberon_v019_2=UBERON:0009854,3.60e-18,23;UBERON:0009856,3.60e-18,23;UBERON:0002107,2.02e-17,22;UBERON:0007499,2.02e-17,22;UBERON:0006925,2.02e-17,22;UBERON:0009497,2.02e-17,22;UBERON:0000015,2.02e-17,22;UBERON:0002423,2.02e-17,22;UBERON:0006235,2.02e-17,22;UBERON:0008835,2.02e-17,22;UBERON:0003894,2.02e-17,22;UBERON:0004161,2.02e-17,22;UBERON:0008836,2.02e-17,22;UBERON:0005409,2.97e-17,47;UBERON:0000160,2.37e-15,31;UBERON:0002365,4.79e-14,25;UBERON:0002330,4.79e-14,25;UBERON:0004119,2.09e-12,118;UBERON:0000925,2.09e-12,118;UBERON:0006595,2.09e-12,118;UBERON:0001007,4.28e-12,116;UBERON:0001555,4.28e-12,116;UBERON:0007026,4.28e-12,116;UBERON:0004921,2.87e-11,114;UBERON:0001264,2.49e-09,12;UBERON:0000344,1.10e-08,15;UBERON:0001242,9.92e-08,13;UBERON:0001262,9.92e-08,13;UBERON:0004786,9.92e-08,13|phase1_expression=0,10.8182376368202,14.1049764210756,3.0246421130683,4.00716583957078,80.749929789619,85.5022264579624,0,0.281577444303333,0,0,0,0,0,0,0,0,0,0,0,0.510259740906419,0.0992909512008853,0,18.079143775655,24.0879745120529,15.5042630311055,27.5687677541808,31.6742712048257,24.893067948785,24.4469225867133,32.3726545556745,0,0,0,31.4848265528889,39.3976109499627,48.3881374341815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286533439938757,0,0,0,0,0.338844532069132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.075726193333184,0,4.05810284182349,49.044160987939,131.914438739304,92.8289489617046,113.061096635894,107.526452903361,28.3697728666139,0.170430322578058,0,0,0,0,0,0,0,0.506719730950197,0.505524445014783,39.8501740219519,0,0.593768556259299,2.08182392119363,2.43572382649713,7.37969591219387,1.65794904607885,0.705532242814229,0.502666365318702,17.5508427091405,0,0,2.58826959915855,1.54589062922275,0.969750506270444,65.2371164263428,0,0,30.9103036802396,0,0,0,0,0,0,0,0,0,0,0.407357455401265,0.373220911830279,0,0.210441855886474,0,0,0,1.20563854268572,0,0,0,0,0,1.32374256117473,1.93546236580344,6.79506770525482,3.89266148915837,3.83077383174383,2.26360350048738,1.39323986772945,0,0,0,0.207125772535502,1.17263029990548,0,0,0.196764231747404,0.154267112887378,0,0.268273401399619,0,0.16455984991348,0,0,0,0,0.134206418760372,0,0,17.5121954981413,10.5780226665418,2.34617075588757,5.57368012465052,8.24751752461397,12.3026950020239,14.6769508937614,15.5985013412299,24.6755112003146,11.8583247401288,15.3314477368164,12.7332142106337,19.3014446247929,26.0657628509724,22.4783571869682,19.7149860521824,0.569003702859245,1.02823661348756,0,0.814605311381257,0.193952487167626,0.0701358198903186,0.0632365371242573,0.295220295959204,0,0.370191491765402,108.205208886809,17.0182007830416,27.5182593158484,28.5574882728764,50.9178904685142,66.3237189319146,69.5128575363276,73.3625150499567,50.586190753811,83.4666696091768,110.701519026063,87.8252636497668,144.785480325156,108.861496395205,65.6594533490199,66.0947624267813,0.369506380333209,0,0.977789858652155,0.678980343100753,0,0.167506257441816,1.19021820443007,0.585400943573396,0.157635144106191,0.8858587585951,0.797273843287435,0.163863314715738,0.518054945597687,0.289298117163023,0,0,0,0.275936746304732,0,0,0,0.757412781613119,0,0,0,0,0.445597348164788,0.283076530788832,0,0,0,0,0.99358059645788,1.24645922567079,0,0.494910368917606,90.2666940711747,23.3069410708782,25.6975023420038,52.0550020126279,65.5570202195316,49.1896236710284,26.3596859031586,35.262771759318,29.5892824059319,48.3536239641798,72.7388399167491,77.3516574361401,0,0.540183282093931,0,0,0,0,0,0,3.98941903708308,1.0591603543191,0,0,0,0,0.119372344003136,0.656563598980245,24.4843902769075,0,0,3.50857675537478,1.11116716421827,0,0.27338845544205,0,0.339956859987711,0.279902904647316,0.276399947608848,83.0563437673149,2.68885594543965,13.2157653632452,12.7446302169725,12.3362094648537,23.5831568845872,22.1177528071106,34.5491444931904,61.774402308231,17.8868663142674,0,1.12738587736838,1.49516546043979,1.65458490457098,0.583353565032143,1.80823752868824,1.520605129417,1.17357238645754,2.0832701575032,0.629156066554265,0.966336483304024,1.15212002503146,0.316011120628178,0,0.205421914329655,0.25984164595559,0.716106782669926,0.198681354781265,0,0,0.201932899896295,0.15241361331,0,0.0974578807397524,0.0962118416403295,0.233753804363138,0.906921534460845,0.665957860122194,0.358855426437903,0,0,0,0,0.428736758158132,0,0,0,0,0,0,0,0,0,0,0,0.726511433089237,0.798049746802062,4.60980735536162,12.1553358534147,16.1402135223546,19.8550989126015,2.889207461421,5.76898160268904,5.77654577265267,6.82282471762253,6.08350319736575,5.65879024158229,4.775716880964,5.18603734479441,5.39893408182765,6.66811167796303,5.91010062318763,5.01563973205633,5.76920261124629,5.00476328456951,5.48590803816665,7.45398385869217,5.00715998889374,4.79643174886684,4.89368778159719,5.49994951295897,6.76833499629258,4.99832451731901,5.16055632614275,4.48913817326191,4.98267076121531,5.61475549540712,6.95692773388472,5.57772628269478,9.83823716003821,1.24905288968973,6.31615342802603,9.45432637812513,2.10417165275728,4.19123696327079,2.78241402744506|short_description=p1@Foxa3}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:15377 | |||
|HGNC= | |||
|MCL_coexpression_id=1525 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P35584 | |||
|association_with_transcript=-3bp_to_NM_008260,uc009fkd.1,uc009fke.1_5end | |||
|cluster_id=chr7:19608891..19608895,- | |||
|description=CAGE_peak_1_at_Foxa3_5end | |||
|id=chr7:19608891..19608895,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!4.99e-22!130;UBERON:0000925!4.99e-22!130;UBERON:0006595!4.99e-22!130;UBERON:0001007!1.11e-21!128;UBERON:0001555!1.11e-21!128;UBERON:0007026!1.11e-21!128;UBERON:0005409!1.14e-21!59;UBERON:0004921!1.09e-20!126;UBERON:0004185!1.09e-20!126;UBERON:0000160!2.99e-20!43;UBERON:0009854!1.61e-15!23;UBERON:0009856!1.61e-15!23;UBERON:0002107!6.84e-15!22;UBERON:0007499!6.84e-15!22;UBERON:0006925!6.84e-15!22;UBERON:0009497!6.84e-15!22;UBERON:0000015!6.84e-15!22;UBERON:0002423!6.84e-15!22;UBERON:0006235!6.84e-15!22;UBERON:0008835!6.84e-15!22;UBERON:0003894!6.84e-15!22;UBERON:0004161!6.84e-15!22;UBERON:0008836!6.84e-15!22;UBERON:0002365!4.62e-12!25;UBERON:0002330!4.62e-12!25;UBERON:0000466!1.29e-11!79;UBERON:0002108!6.56e-10!16;UBERON:0001041!2.41e-09!92;UBERON:0000077!7.94e-09!97;UBERON:0001045!1.08e-08!13;UBERON:0001264!4.34e-08!12;UBERON:0003922!4.34e-08!12;UBERON:0002114!4.34e-08!12;UBERON:0003923!4.34e-08!12;UBERON:0003924!4.34e-08!12;UBERON:0003921!4.34e-08!12;UBERON:0005177!6.74e-08!85;UBERON:0000344!1.52e-07!15;UBERON:0005172!2.38e-07!49;UBERON:0005173!2.38e-07!49;UBERON:0002417!2.38e-07!49;UBERON:0000916!2.38e-07!49;UBERON:0000949!9.26e-07!72;UBERON:0001242!9.66e-07!13;UBERON:0000060!9.66e-07!13;UBERON:0001262!9.66e-07!13;UBERON:0004786!9.66e-07!13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0009854,3.60e-18,23;UBERON:0009856,3.60e-18,23;UBERON:0002107,2.02e-17,22;UBERON:0007499,2.02e-17,22;UBERON:0006925,2.02e-17,22;UBERON:0009497,2.02e-17,22;UBERON:0000015,2.02e-17,22;UBERON:0002423,2.02e-17,22;UBERON:0006235,2.02e-17,22;UBERON:0008835,2.02e-17,22;UBERON:0003894,2.02e-17,22;UBERON:0004161,2.02e-17,22;UBERON:0008836,2.02e-17,22;UBERON:0005409,2.97e-17,47;UBERON:0000160,2.37e-15,31;UBERON:0002365,4.79e-14,25;UBERON:0002330,4.79e-14,25;UBERON:0004119,2.09e-12,118;UBERON:0000925,2.09e-12,118;UBERON:0006595,2.09e-12,118;UBERON:0001007,4.28e-12,116;UBERON:0001555,4.28e-12,116;UBERON:0007026,4.28e-12,116;UBERON:0004921,2.87e-11,114;UBERON:0001264,2.49e-09,12;UBERON:0000344,1.10e-08,15;UBERON:0001242,9.92e-08,13;UBERON:0001262,9.92e-08,13;UBERON:0004786,9.92e-08,13 | |||
|phase1_expression=0,10.8182376368202,14.1049764210756,3.0246421130683,4.00716583957078,80.749929789619,85.5022264579624,0,0.281577444303333,0,0,0,0,0,0,0,0,0,0,0,0.510259740906419,0.0992909512008853,0,18.079143775655,24.0879745120529,15.5042630311055,27.5687677541808,31.6742712048257,24.893067948785,24.4469225867133,32.3726545556745,0,0,0,31.4848265528889,39.3976109499627,48.3881374341815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286533439938757,0,0,0,0,0.338844532069132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.075726193333184,0,4.05810284182349,49.044160987939,131.914438739304,92.8289489617046,113.061096635894,107.526452903361,28.3697728666139,0.170430322578058,0,0,0,0,0,0,0,0.506719730950197,0.505524445014783,39.8501740219519,0,0.593768556259299,2.08182392119363,2.43572382649713,7.37969591219387,1.65794904607885,0.705532242814229,0.502666365318702,17.5508427091405,0,0,2.58826959915855,1.54589062922275,0.969750506270444,65.2371164263428,0,0,30.9103036802396,0,0,0,0,0,0,0,0,0,0,0.407357455401265,0.373220911830279,0,0.210441855886474,0,0,0,1.20563854268572,0,0,0,0,0,1.32374256117473,1.93546236580344,6.79506770525482,3.89266148915837,3.83077383174383,2.26360350048738,1.39323986772945,0,0,0,0.207125772535502,1.17263029990548,0,0,0.196764231747404,0.154267112887378,0,0.268273401399619,0,0.16455984991348,0,0,0,0,0.134206418760372,0,0,17.5121954981413,10.5780226665418,2.34617075588757,5.57368012465052,8.24751752461397,12.3026950020239,14.6769508937614,15.5985013412299,24.6755112003146,11.8583247401288,15.3314477368164,12.7332142106337,19.3014446247929,26.0657628509724,22.4783571869682,19.7149860521824,0.569003702859245,1.02823661348756,0,0.814605311381257,0.193952487167626,0.0701358198903186,0.0632365371242573,0.295220295959204,0,0.370191491765402,108.205208886809,17.0182007830416,27.5182593158484,28.5574882728764,50.9178904685142,66.3237189319146,69.5128575363276,73.3625150499567,50.586190753811,83.4666696091768,110.701519026063,87.8252636497668,144.785480325156,108.861496395205,65.6594533490199,66.0947624267813,0.369506380333209,0,0.977789858652155,0.678980343100753,0,0.167506257441816,1.19021820443007,0.585400943573396,0.157635144106191,0.8858587585951,0.797273843287435,0.163863314715738,0.518054945597687,0.289298117163023,0,0,0,0.275936746304732,0,0,0,0.757412781613119,0,0,0,0,0.445597348164788,0.283076530788832,0,0,0,0,0.99358059645788,1.24645922567079,0,0.494910368917606,90.2666940711747,23.3069410708782,25.6975023420038,52.0550020126279,65.5570202195316,49.1896236710284,26.3596859031586,35.262771759318,29.5892824059319,48.3536239641798,72.7388399167491,77.3516574361401,0,0.540183282093931,0,0,0,0,0,0,3.98941903708308,1.0591603543191,0,0,0,0,0.119372344003136,0.656563598980245,24.4843902769075,0,0,3.50857675537478,1.11116716421827,0,0.27338845544205,0,0.339956859987711,0.279902904647316,0.276399947608848,83.0563437673149,2.68885594543965,13.2157653632452,12.7446302169725,12.3362094648537,23.5831568845872,22.1177528071106,34.5491444931904,61.774402308231,17.8868663142674,0,1.12738587736838,1.49516546043979,1.65458490457098,0.583353565032143,1.80823752868824,1.520605129417,1.17357238645754,2.0832701575032,0.629156066554265,0.966336483304024,1.15212002503146,0.316011120628178,0,0.205421914329655,0.25984164595559,0.716106782669926,0.198681354781265,0,0,0.201932899896295,0.15241361331,0,0.0974578807397524,0.0962118416403295,0.233753804363138,0.906921534460845,0.665957860122194,0.358855426437903,0,0,0,0,0.428736758158132,0,0,0,0,0,0,0,0,0,0,0,0.726511433089237,0.798049746802062,4.60980735536162,12.1553358534147,16.1402135223546,19.8550989126015,2.889207461421,5.76898160268904,5.77654577265267,6.82282471762253,6.08350319736575,5.65879024158229,4.775716880964,5.18603734479441,5.39893408182765,6.66811167796303,5.91010062318763,5.01563973205633,5.76920261124629,5.00476328456951,5.48590803816665,7.45398385869217,5.00715998889374,4.79643174886684,4.89368778159719,5.49994951295897,6.76833499629258,4.99832451731901,5.16055632614275,4.48913817326191,4.98267076121531,5.61475549540712,6.95692773388472,5.57772628269478,9.83823716003821,1.24905288968973,6.31615342802603,9.45432637812513,2.10417165275728,4.19123696327079,2.78241402744506 | |||
|short_description=p1@Foxa3 | |||
}} |
Revision as of 17:23, 4 August 2015
Short description: | p1@Foxa3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Foxa3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1525 |
Association with transcript: | -3bp_to_NM_008260, uc009fkd.1, uc009fke.1_5end |
EntrezGene: | 15377 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
digestive tract diverticulum | 3.60e-18 | 23 |
sac | 3.60e-18 | 23 |
liver | 2.02e-17 | 22 |
epithelial sac | 2.02e-17 | 22 |
digestive gland | 2.02e-17 | 22 |
epithelium of foregut-midgut junction | 2.02e-17 | 22 |
anatomical boundary | 2.02e-17 | 22 |
hepatobiliary system | 2.02e-17 | 22 |
foregut-midgut junction | 2.02e-17 | 22 |
hepatic diverticulum | 2.02e-17 | 22 |
liver primordium | 2.02e-17 | 22 |
septum transversum | 2.02e-17 | 22 |
liver bud | 2.02e-17 | 22 |
gastrointestinal system | 2.97e-17 | 47 |
intestine | 2.37e-15 | 31 |
exocrine gland | 4.79e-14 | 25 |
exocrine system | 4.79e-14 | 25 |
endoderm-derived structure | 2.09e-12 | 118 |
endoderm | 2.09e-12 | 118 |
presumptive endoderm | 2.09e-12 | 118 |
digestive system | 4.28e-12 | 116 |
digestive tract | 4.28e-12 | 116 |
primitive gut | 4.28e-12 | 116 |
subdivision of digestive tract | 2.87e-11 | 114 |
pancreas | 2.49e-09 | 12 |
mucosa | 1.10e-08 | 15 |
intestinal mucosa | 9.92e-08 | 13 |
wall of intestine | 9.92e-08 | 13 |
gastrointestinal system mucosa | 9.92e-08 | 13 |