FFCP PHASE1:Mm9::chr9:29219338..29219358,-: Difference between revisions
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{{FFCP|EntrezGene=235106|HGNC=|UniProt=D3Z396|association_with_transcript=-17bp_to_ENSMUST00000115236_5end|description=CAGE_peak_5_at_Ntm_5end|id=chr9:29219338..29219358,-|ontology_enrichment_celltype=CL:0000540!4.40e-09!33;CL:0000047!4.40e-09!33;CL:0000031!4.40e-09!33;CL:0000404!4.40e-09!33;CL:0000221!7.27e-07!44;CL:0000133!7.27e-07!44|ontology_enrichment_celltype_v019_2=CL:0000540,3.95e-07,33;CL:0000047,3.95e-07,33;CL:0000031,3.95e-07,33;CL:0000404,3.95e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!9.57e-16!75;UBERON:0001016!9.57e-16!75;UBERON:0004121!4.55e-15!102;UBERON:0000924!4.55e-15!102;UBERON:0006601!4.55e-15!102;UBERON:0001017!1.99e-14!73;UBERON:0005743!1.99e-14!73;UBERON:0002346!1.16e-12!71;UBERON:0003075!1.16e-12!71;UBERON:0007284!1.16e-12!71;UBERON:0000033!8.37e-12!63;UBERON:0001049!2.68e-11!52;UBERON:0005068!2.68e-11!52;UBERON:0006241!2.68e-11!52;UBERON:0007135!2.68e-11!52;UBERON:0003056!3.66e-11!49;UBERON:0000955!2.96e-10!50;UBERON:0006238!2.96e-10!50;UBERON:0002020!4.68e-10!34;UBERON:0002616!1.16e-09!49;UBERON:0002780!2.36e-09!39;UBERON:0001890!2.36e-09!39;UBERON:0006240!2.36e-09!39;UBERON:0003080!2.95e-09!40;UBERON:0002791!8.80e-08!29;UBERON:0003528!8.80e-08!29;UBERON:0001893!8.80e-08!29;UBERON:0000468!1.13e-07!333;UBERON:0002021!4.57e-07!10;UBERON:0000411!4.57e-07!10;UBERON:0001950!4.57e-07!10;UBERON:0000153!8.68e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.73e-12,75;UBERON:0002346,2.12e-11,64;UBERON:0003075,2.12e-11,64;UBERON:0007284,2.12e-11,64;UBERON:0004121,5.17e-11,95;UBERON:0000924,5.17e-11,95;UBERON:0006601,5.17e-11,95;UBERON:0001017,5.73e-11,73;UBERON:0002020,1.07e-10,34;UBERON:0002021,4.49e-10,10;UBERON:0000411,4.49e-10,10;UBERON:0001950,4.49e-10,10;UBERON:0000073,3.82e-09,54;UBERON:0001049,3.90e-09,52;UBERON:0005068,3.90e-09,52;UBERON:0006241,3.90e-09,52;UBERON:0007135,3.90e-09,52;UBERON:0003056,1.09e-08,49;UBERON:0010371,1.13e-08,73;UBERON:0000010,3.15e-08,11;UBERON:0003528,4.10e-08,29;UBERON:0002791,4.10e-08,29;UBERON:0001893,4.10e-08,29;UBERON:0000955,6.37e-08,47;UBERON:0006238,6.37e-08,47;UBERON:0010314,1.44e-07,92;UBERON:0002780,1.63e-07,39;UBERON:0001890,1.63e-07,39;UBERON:0006240,1.63e-07,39;UBERON:0002616,3.15e-07,46;UBERON:0003080,3.62e-07,40|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139986421625363,0,0,0,0,0,0,0.515672092277442,0.809265843438391,0.528990979272033,0,0.338844532069132,0,0,0,0,0.299600110518405,0,0.518448061542388,0.675029691658453,0.420649922702764,0.571301968807607,1.54607978666129,1.34739879136449,0.766763768145891,0,1.10115880999389,0.766124028511126,0.46081959976873,2.1101806036831,1.9212405156506,3.12548022334056,1.11673199600552,1.12552522006336,1.5279824777681,3.83017161115768,5.26775218956681,3.16879057903011,9.23859558664845,10.3533037346296,0,0,0,0,0,0,0,0,0,0,0.985903938436763,0,0,0,0,0,0,0,0,0,0,0.913396434936424,0.461230994512117,0.452167921657868,0.117588707135705,0,0,0.144599356919912,0,1.61766849947409,0,0,0,3.51336956413857,3.77004072264219,0,0,0,0,0.299581278809645,0.457500602818626,1.00523481690292,1.91206752211504,1.79000820131231,1.66230435647648,0.324482526135515,0.712875546952214,0,0,0.420883711772948,0.520481771850815,1.60931473103431,1.0803727788321,1.65775299619287,1.49680298132921,1.15302348256365,1.12442069471675,0.258703370739016,0.215567992932842,0.756424320671277,1.40760899331159,3.28793598641362,1.94633074457919,1.0447564995665,1.64625709126355,0.796137067273973,0,0,0,0.828503090142008,2.34526059981096,1.80062061461015,1.18372367792605,0.787056926989615,1.3884040159864,1.39520366850245,0.536546802799238,0.583826711835847,0.822799249567402,0.656669856316381,0.243206428637567,0.438599962275997,0.219550115291051,0.268412837520744,0.420579897128254,0.617427674275707,0,0,1.06644125267617,0.464473343720877,0.257734922644187,0.605050573870028,0,0,0,0,0,0.198956472041151,0,0,0,0,3.22435431620239,2.39921876480431,0,2.03651327845314,0.969762435838129,1.40271639780637,0.505892296994058,0.147610147979602,0.156998727841375,0,0.296452627087149,0.333690211432188,0,0,0,0.241177159752417,0,0.287696137450811,0.162135226775035,0,0,0,0,0,0,0,0,1.32643988239339,0.977789858652155,1.01847051465113,0,0.670025029767263,0.238043640886014,0,0,0.221464689648775,0,0.327726629431476,0.172684981865896,0,0,0,0,0,0.80275294993896,0.234423373184406,0,0,1.89304931649754,1.17131623288992,0.861693590931196,2.86762557543062,3.11918143715352,2.26461224631066,2.02405350837447,1.16902343164525,1.18586333383957,7.39039027770156,0,2.13678724400706,2.11753047159649,3.13443233647817,0,1.21390318077491,0,0.943025398779491,0.295301892880773,0.307435147943927,0,0,0.712994756769443,0,0,0,0.340439605753788,0.540183282093931,0.517434735131018,0.857348140126369,1.59606210278046,1.07021290561242,0.822745103010605,1.2178597964584,0,0,0,0.32977250588296,0.645857706783622,0.663442174209714,0.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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:235106 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:D3Z396 | |||
|association_with_transcript=-17bp_to_ENSMUST00000115236_5end | |||
|cluster_id=chr9:29219338..29219358,- | |||
|description=CAGE_peak_5_at_Ntm_5end | |||
|id=chr9:29219338..29219358,- | |||
|ontology_enrichment_celltype=CL:0000540!4.40e-09!33;CL:0000047!4.40e-09!33;CL:0000031!4.40e-09!33;CL:0000404!4.40e-09!33;CL:0000221!7.27e-07!44;CL:0000133!7.27e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.95e-07,33;CL:0000047,3.95e-07,33;CL:0000031,3.95e-07,33;CL:0000404,3.95e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!9.57e-16!75;UBERON:0001016!9.57e-16!75;UBERON:0004121!4.55e-15!102;UBERON:0000924!4.55e-15!102;UBERON:0006601!4.55e-15!102;UBERON:0001017!1.99e-14!73;UBERON:0005743!1.99e-14!73;UBERON:0002346!1.16e-12!71;UBERON:0003075!1.16e-12!71;UBERON:0007284!1.16e-12!71;UBERON:0000033!8.37e-12!63;UBERON:0001049!2.68e-11!52;UBERON:0005068!2.68e-11!52;UBERON:0006241!2.68e-11!52;UBERON:0007135!2.68e-11!52;UBERON:0003056!3.66e-11!49;UBERON:0000955!2.96e-10!50;UBERON:0006238!2.96e-10!50;UBERON:0002020!4.68e-10!34;UBERON:0002616!1.16e-09!49;UBERON:0002780!2.36e-09!39;UBERON:0001890!2.36e-09!39;UBERON:0006240!2.36e-09!39;UBERON:0003080!2.95e-09!40;UBERON:0002791!8.80e-08!29;UBERON:0003528!8.80e-08!29;UBERON:0001893!8.80e-08!29;UBERON:0000468!1.13e-07!333;UBERON:0002021!4.57e-07!10;UBERON:0000411!4.57e-07!10;UBERON:0001950!4.57e-07!10;UBERON:0000153!8.68e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.73e-12,75;UBERON:0002346,2.12e-11,64;UBERON:0003075,2.12e-11,64;UBERON:0007284,2.12e-11,64;UBERON:0004121,5.17e-11,95;UBERON:0000924,5.17e-11,95;UBERON:0006601,5.17e-11,95;UBERON:0001017,5.73e-11,73;UBERON:0002020,1.07e-10,34;UBERON:0002021,4.49e-10,10;UBERON:0000411,4.49e-10,10;UBERON:0001950,4.49e-10,10;UBERON:0000073,3.82e-09,54;UBERON:0001049,3.90e-09,52;UBERON:0005068,3.90e-09,52;UBERON:0006241,3.90e-09,52;UBERON:0007135,3.90e-09,52;UBERON:0003056,1.09e-08,49;UBERON:0010371,1.13e-08,73;UBERON:0000010,3.15e-08,11;UBERON:0003528,4.10e-08,29;UBERON:0002791,4.10e-08,29;UBERON:0001893,4.10e-08,29;UBERON:0000955,6.37e-08,47;UBERON:0006238,6.37e-08,47;UBERON:0010314,1.44e-07,92;UBERON:0002780,1.63e-07,39;UBERON:0001890,1.63e-07,39;UBERON:0006240,1.63e-07,39;UBERON:0002616,3.15e-07,46;UBERON:0003080,3.62e-07,40 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139986421625363,0,0,0,0,0,0,0.515672092277442,0.809265843438391,0.528990979272033,0,0.338844532069132,0,0,0,0,0.299600110518405,0,0.518448061542388,0.675029691658453,0.420649922702764,0.571301968807607,1.54607978666129,1.34739879136449,0.766763768145891,0,1.10115880999389,0.766124028511126,0.46081959976873,2.1101806036831,1.9212405156506,3.12548022334056,1.11673199600552,1.12552522006336,1.5279824777681,3.83017161115768,5.26775218956681,3.16879057903011,9.23859558664845,10.3533037346296,0,0,0,0,0,0,0,0,0,0,0.985903938436763,0,0,0,0,0,0,0,0,0,0,0.913396434936424,0.461230994512117,0.452167921657868,0.117588707135705,0,0,0.144599356919912,0,1.61766849947409,0,0,0,3.51336956413857,3.77004072264219,0,0,0,0,0.299581278809645,0.457500602818626,1.00523481690292,1.91206752211504,1.79000820131231,1.66230435647648,0.324482526135515,0.712875546952214,0,0,0.420883711772948,0.520481771850815,1.60931473103431,1.0803727788321,1.65775299619287,1.49680298132921,1.15302348256365,1.12442069471675,0.258703370739016,0.215567992932842,0.756424320671277,1.40760899331159,3.28793598641362,1.94633074457919,1.0447564995665,1.64625709126355,0.796137067273973,0,0,0,0.828503090142008,2.34526059981096,1.80062061461015,1.18372367792605,0.787056926989615,1.3884040159864,1.39520366850245,0.536546802799238,0.583826711835847,0.822799249567402,0.656669856316381,0.243206428637567,0.438599962275997,0.219550115291051,0.268412837520744,0.420579897128254,0.617427674275707,0,0,1.06644125267617,0.464473343720877,0.257734922644187,0.605050573870028,0,0,0,0,0,0.198956472041151,0,0,0,0,3.22435431620239,2.39921876480431,0,2.03651327845314,0.969762435838129,1.40271639780637,0.505892296994058,0.147610147979602,0.156998727841375,0,0.296452627087149,0.333690211432188,0,0,0,0.241177159752417,0,0.287696137450811,0.162135226775035,0,0,0,0,0,0,0,0,1.32643988239339,0.977789858652155,1.01847051465113,0,0.670025029767263,0.238043640886014,0,0,0.221464689648775,0,0.327726629431476,0.172684981865896,0,0,0,0,0,0.80275294993896,0.234423373184406,0,0,1.89304931649754,1.17131623288992,0.861693590931196,2.86762557543062,3.11918143715352,2.26461224631066,2.02405350837447,1.16902343164525,1.18586333383957,7.39039027770156,0,2.13678724400706,2.11753047159649,3.13443233647817,0,1.21390318077491,0,0.943025398779491,0.295301892880773,0.307435147943927,0,0,0.712994756769443,0,0,0,0.340439605753788,0.540183282093931,0.517434735131018,0.857348140126369,1.59606210278046,1.07021290561242,0.822745103010605,1.2178597964584,0,0,0,0.32977250588296,0.645857706783622,0.663442174209714,0.835606408021955,0.328281799490123,0,0.18542530201051,0.341741761595705,2.47664241555867,1.11116716421827,0.188368457004691,0.136694227721025,0,0,0,0,0,0.632671987162271,1.82987520414164,0.324016022465404,0.209088296014469,0.218362563746178,0.539457385539283,0.826534557253359,0.26175594198403,0,0,0,0.299033092087958,0,0,0.129159823477731,0,0,0,0,0,0,0,0.202725215290164,0.616265742988964,0.129920822977795,0.537080087002444,0.596044064343795,0.240390899039938,0,0.100966449948148,0,0,0,0,0,0.226730383615211,0,0,0,0,0.187682475451182,1.46521299413812,0.214368379079066,0,3.95326289831947,2.30162618253588,2.86447756719698,1.3748254587495,2.05524755931193,1.5107877947794,2.02506750069542,1.80128481289688,2.71885445390523,3.62432218226274,0,0.798049746802062,1.02440163452481,1.45864030240976,0.838452650511929,0.551530525350042,0.888986911206461,1.85431551515005,1.92551525755089,1.51618327058278,1.52087579934144,2.07488975524684,1.03005658216871,1.21647789569252,1.55075766180156,1.42888107384922,1.62238056322798,0.578727661391115,0.824171801606613,1.32479028120958,1.02860775715625,0.70990322463735,1.43061713968393,1.45346416632329,1.50575008664529,0.592302255241736,1.28049581010941,1.31534855718921,1.90125759384206,1.68342681497322,0.593175090620871,1.67457620038458,2.04615521584845,1.23949472948773,0.578719832943424,2.49810577937946,0.467863216890817,0.859484216193193,0.57386499620653,0.220591419119515,0.231867835620421 | |||
|short_description=p5@Ntm | |||
}} |
Revision as of 23:28, 4 August 2015
Short description: | p5@Ntm |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Ntm_5end |
Coexpression cluster: | NA |
Association with transcript: | -17bp_to_ENSMUST00000115236_5end |
EntrezGene: | 235106 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.95e-07 | 33 |
neuronal stem cell | 3.95e-07 | 33 |
neuroblast | 3.95e-07 | 33 |
electrically signaling cell | 3.95e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.73e-12 | 75 |
neurectoderm | 2.12e-11 | 64 |
neural plate | 2.12e-11 | 64 |
presumptive neural plate | 2.12e-11 | 64 |
ectoderm-derived structure | 5.17e-11 | 95 |
ectoderm | 5.17e-11 | 95 |
presumptive ectoderm | 5.17e-11 | 95 |
central nervous system | 5.73e-11 | 73 |
gray matter | 1.07e-10 | 34 |
occipital lobe | 4.49e-10 | 10 |
visual cortex | 4.49e-10 | 10 |
neocortex | 4.49e-10 | 10 |
regional part of nervous system | 3.82e-09 | 54 |
neural tube | 3.90e-09 | 52 |
neural rod | 3.90e-09 | 52 |
future spinal cord | 3.90e-09 | 52 |
neural keel | 3.90e-09 | 52 |
pre-chordal neural plate | 1.09e-08 | 49 |
ecto-epithelium | 1.13e-08 | 73 |
peripheral nervous system | 3.15e-08 | 11 |
brain grey matter | 4.10e-08 | 29 |
regional part of telencephalon | 4.10e-08 | 29 |
telencephalon | 4.10e-08 | 29 |
brain | 6.37e-08 | 47 |
future brain | 6.37e-08 | 47 |
structure with developmental contribution from neural crest | 1.44e-07 | 92 |
regional part of forebrain | 1.63e-07 | 39 |
forebrain | 1.63e-07 | 39 |
future forebrain | 1.63e-07 | 39 |
regional part of brain | 3.15e-07 | 46 |
anterior neural tube | 3.62e-07 | 40 |