FFCP PHASE1:Hg19::chr20:42875893..42875921,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=78997 | |EntrezGene=entrezgene:78997 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=4213 | |HGNC=HGNC:4213 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt=F8W7N4,B7Z1I3,E7ENJ1,Q96MZ0,Q5JY50 | |UniProt=uniprot:F8W7N4,uniprot:B7Z1I3,uniprot:E7ENJ1,uniprot:Q96MZ0,uniprot:Q5JY50 | ||
|association_with_transcript=0bp_to_ENST00000262604,ENST00000372946,ENST00000372947,ENST00000545149,NM_024034,uc002xlp.1,uc002xlq.2,uc010zwl.1,uc010zwm.1,uc010zwn.1_5end | |association_with_transcript=0bp_to_ENST00000262604,ENST00000372946,ENST00000372947,ENST00000545149,NM_024034,uc002xlp.1,uc002xlq.2,uc010zwl.1,uc010zwm.1,uc010zwn.1_5end | ||
|cluster_id=chr20:42875893..42875921,+ | |||
|coexpression_cluster_id=C2114 | |coexpression_cluster_id=C2114 | ||
|description=CAGE_peak_2_at_GDAP1L1_5end | |description=CAGE_peak_2_at_GDAP1L1_5end | ||
Revision as of 14:11, 28 July 2015
| Short description: | p2@GDAP1L1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_2_at_GDAP1L1_5end |
| Coexpression cluster: | C2114_neuroblastoma_parietal_occipital_Neurons_brain_medial_amygdala |
| Association with transcript: | 0bp_to_ENST00000262604, ENST00000372946, ENST00000372947, ENST00000545149, NM_024034, uc002xlp.1, uc002xlq.2, uc010zwl.1, uc010zwm.1, uc010zwn.1_5end |
| EntrezGene: | 78997 |
| HGNC: | 4213 |
| UniProt: | F8W7N4B7Z1I3E7ENJ1Q96MZ0Q5JY50 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p2@GDAP1L1 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| neuronal stem cell | 4.74e-08 | 8 |
| neuron | 2.24e-07 | 6 |
| neuroblast | 2.24e-07 | 6 |
| electrically signaling cell | 2.24e-07 | 6 |
| embryonic stem cell | 3.09e-07 | 5 |
Showing 1 to 5 of 5 entries
| Ontology term | p-value | n |
|---|---|---|
| neural tube | 2.13e-93 | 56 |
| neural rod | 2.13e-93 | 56 |
| future spinal cord | 2.13e-93 | 56 |
| neural keel | 2.13e-93 | 56 |
| central nervous system | 2.11e-92 | 81 |
| nervous system | 3.33e-92 | 89 |
| regional part of nervous system | 5.19e-91 | 53 |
| regional part of brain | 5.19e-91 | 53 |
| brain | 3.64e-81 | 68 |
| future brain | 3.64e-81 | 68 |
Showing 1 to 10 of 77 entries
