CL:0000325: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=stuff accumulating cell | |name=stuff accumulating cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:32, 12 September 2014
| Name: | stuff accumulating cell |
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| Namespace: | FANTOM |
| Definition: | "A cell that is specialised to accumulate a particular substance(s)." [FB:ma] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000003(native cell) |
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Children
| is a: | CL:0000136 (fat cell),CL:0000147 (pigment cell),CL:0000234 (phagocyte),CL:0000306 (crystallin accumulating cell),CL:0000311 (keratin accumulating cell),CL:0000328 (myelin accumulating cell) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10647-109A8 (lens epithelial cell line:SRA 01/04)
- 10843-111E6 (merkel cell carcinoma cell line:MKL-1)
- 10844-111E7 (merkel cell carcinoma cell line:MS-1)
- 11215-116A9 (Retinal Pigment Epithelial Cells, donor0)
- 11232-116C8 (Macrophage - monocyte derived, donor1)
- 11251-116E9 (Keratinocyte - oral, donor1)
- 11259-116F8 (Adipocyte - subcutaneous, donor1)
- 11272-116H3 (Keratinocyte - epidermal, donor1)
- 11274-116H5 (Melanocyte - light, donor1)
- 11313-117C8 (Macrophage - monocyte derived, donor2)
... further results Mouse (Mus musculus)
- 10647-109A8 (lens epithelial cell line:SRA 01/04)
- 10843-111E6 (merkel cell carcinoma cell line:MKL-1)
- 10844-111E7 (merkel cell carcinoma cell line:MS-1)
- 11215-116A9 (Retinal Pigment Epithelial Cells, donor0)
- 11232-116C8 (Macrophage - monocyte derived, donor1)
- 11251-116E9 (Keratinocyte - oral, donor1)
- 11259-116F8 (Adipocyte - subcutaneous, donor1)
- 11272-116H3 (Keratinocyte - epidermal, donor1)
- 11274-116H5 (Melanocyte - light, donor1)
- 11313-117C8 (Macrophage - monocyte derived, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000325 (stuff accumulating cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results for this cluster
