CL:0000708: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=leptomeningeal cell | |name=leptomeningeal cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0003210 | |part_of=UBERON:0003210 | ||
Latest revision as of 16:36, 12 September 2014
| Name: | leptomeningeal cell |
|---|---|
| Namespace: | FANTOM |
| Definition: | "Stromal cell that forms the internal covering of the vertebrate brain and produces ECM for this and the choroid plexus." [JB:jb] |
| Synonyms: | "leptomemingeal cell" RELATED [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000327(extracellular matrix secreting cell),CL:0002319(neural cell) |
|---|---|
| part_of: | UBERON:0003210(blood-cerebrospinal fluid barrier) |
Children
| derives from: | FF:0000091 (human leptomeningeal cell sample),FF:0000111 (mouse leptomeningeal cell sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11493-119E8 (Meningeal Cells, donor1)
- 11573-120E7 (Meningeal Cells, donor2)
- 11639-122D1 (Mouse Meningeal cells, donor3)
- 11654-122E7 (Meningeal Cells, donor3)
- 11716-123C6 (Mouse Meningeal cells, donor1)
- 11734-123E6 (Mouse Meningeal cells, donor2)
Mouse (Mus musculus)
- 11493-119E8 (Meningeal Cells, donor1)
- 11573-120E7 (Meningeal Cells, donor2)
- 11639-122D1 (Mouse Meningeal cells, donor3)
- 11654-122E7 (Meningeal Cells, donor3)
- 11716-123C6 (Mouse Meningeal cells, donor1)
- 11734-123E6 (Mouse Meningeal cells, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000708 (leptomeningeal cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 8.98e-131 | FFCP PHASE1:Hg19::chr11:60680237..60680241,+#_032f0744bfd767245554ef4d9a66337b | p@chr11:60680237..60680241, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr11:60680237..60680241,+#_032f0744bfd767245554ef4d9a66337b | p@chr11:60680237..60680241, + |
| 3.48e-118 | FFCP PHASE1:Hg19::chr11:60680219..60680235,+#_85aa0740c0238ed98b02224e2919ecde | p@chr11:60680219..60680235, + |
| 3.48e-118 | FFCP PHASE2:Hg19::chr11:60680219..60680235,+#_85aa0740c0238ed98b02224e2919ecde | p@chr11:60680219..60680235, + |
| 5.69e-99 | FFCP PHASE1:Hg19::chr7:107720432..107720443,+#_a0ac1bcfab28fec5d8f654006353d3ca | p@chr7:107720432..107720443, + |
| 5.69e-99 | FFCP PHASE2:Hg19::chr7:107720432..107720443,+#_a0ac1bcfab28fec5d8f654006353d3ca | p@chr7:107720432..107720443, + |
| 6.24e-88 | FFCP PHASE1:Hg19::chr5:156811295..156811314,+#_809d425831e08c460f20dc5d2d533888 | p35@CYFIP2 |
| 6.24e-88 | FFCP PHASE2:Hg19::chr5:156811295..156811314,+#_809d425831e08c460f20dc5d2d533888 | p35@CYFIP2 |
| 7.51e-74 | FFCP PHASE1:Hg19::chr14:76072096..76072107,+#_9b77a77620f98dcec236bed223246ce5 | p7@FLVCR2 |
| 7.51e-74 | FFCP PHASE2:Hg19::chr14:76072096..76072107,+#_9b77a77620f98dcec236bed223246ce5 | p7@FLVCR2 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr11:60680267..60680270,+#_57622a29967bd0ce8c20cc33495fa343 | p@chr11:60680267..60680270, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr11:60680267..60680270,+#_57622a29967bd0ce8c20cc33495fa343 | p@chr11:60680267..60680270, + |
| 1.68e-58 | FFCP PHASE2:Mm9::chr4:88940410..88940415,-#_bd3137813de991fa0c7150d980567e23 | p6@Cdkn2a |
| 1.68e-58 | FFCP PHASE1:Mm9::chr4:88940410..88940415,-#_bd3137813de991fa0c7150d980567e23 | p6@Cdkn2a |
| 4.17e-55 | FFCP PHASE1:Hg19::chr15:80843472..80843480,+#_397c3c68319b0f8b4f8824fde9cb26e1 | p22@ARNT2 |
| 4.17e-55 | FFCP PHASE2:Hg19::chr15:80843472..80843480,+#_397c3c68319b0f8b4f8824fde9cb26e1 | p22@ARNT2 |
| 1.59e-50 | FFCP PHASE1:Hg19::chr6:45618665..45618676,+#_ecdedff0e4fb00d57b2b27a695f20377 | p@chr6:45618665..45618676, + |
| 1.59e-50 | FFCP PHASE2:Hg19::chr6:45618665..45618676,+#_ecdedff0e4fb00d57b2b27a695f20377 | p@chr6:45618665..45618676, + |
| 4.73e-47 | FFCP PHASE1:Hg19::chr15:80842979..80842998,+#_25f4f043b87d3e7dda0a6d3e43884ac8 | p20@ARNT2 |
| 4.73e-47 | FFCP PHASE2:Hg19::chr15:80842979..80842998,+#_25f4f043b87d3e7dda0a6d3e43884ac8 | p20@ARNT2 |
| 7.81e-45 | FFCP PHASE1:Hg19::chr3:146517344..146517356,+#_61e9a9dc8235c84d805fb7554ffda8b0 | p@chr3:146517344..146517356, + |
| 7.81e-45 | FFCP PHASE2:Hg19::chr3:146517344..146517356,+#_61e9a9dc8235c84d805fb7554ffda8b0 | p@chr3:146517344..146517356, + |
| 2.97e-44 | FFCP PHASE1:Hg19::chr5:92498209..92498218,-#_0a1e1ba3e72766bad5725c3a6326d910 | p@chr5:92498209..92498218, - |
| 2.97e-44 | FFCP PHASE2:Hg19::chr5:92498209..92498218,-#_0a1e1ba3e72766bad5725c3a6326d910 | p@chr5:92498209..92498218, - |
| 7.52e-44 | FFCP PHASE1:Mm9::chr4:138749194..138749201,+#_01e82a950d45bb2928147c7e0724be32 | p@chr4:138749194..138749201, + |
| 7.52e-44 | FFCP PHASE2:Mm9::chr4:138749194..138749201,+#_01e82a950d45bb2928147c7e0724be32 | p@chr4:138749194..138749201, + |
| 1.24e-43 | FFCP PHASE1:Mm9::chr7:4729743..4729746,-#_a174604cbd3e9c2798493016bda2fce7 | p1@Il11 |
| 1.24e-43 | FFCP PHASE2:Mm9::chr7:4729743..4729746,-#_a174604cbd3e9c2798493016bda2fce7 | p1@Il11 |
| 1.14e-40 | FFCP PHASE2:Hg19::chr2:202562749..202562760,-#_0c951442dd18f2288158e45f512f8495 | p7@MPP4 |
| 1.14e-40 | FFCP PHASE1:Hg19::chr2:202562749..202562760,-#_0c951442dd18f2288158e45f512f8495 | p7@MPP4 |
| 6.35e-36 | FFCP PHASE1:Mm9::chr11:100820213..100820220,-#_ebae4b7c84f6e9b36ce4dc591e830b1c | p@chr11:100820213..100820220, - |
| 6.35e-36 | FFCP PHASE2:Mm9::chr11:100820213..100820220,-#_ebae4b7c84f6e9b36ce4dc591e830b1c | p@chr11:100820213..100820220, - |
| 7.74e-36 | FFCP PHASE1:Hg19::chr17:1013251..1013277,-#_e5e6ded3e985367f814a698501a5de05 | p@chr17:1013251..1013277, - |
| 7.74e-36 | FFCP PHASE2:Hg19::chr17:1013251..1013277,-#_e5e6ded3e985367f814a698501a5de05 | p@chr17:1013251..1013277, - |
| 1.24e-35 | FFCP PHASE2:Hg19::chr6:158490457..158490470,+#_e9b914e8743e996bd5498a6420210cb7 | p10@SYNJ2 |
| 1.24e-35 | FFCP PHASE1:Hg19::chr6:158490457..158490470,+#_e9b914e8743e996bd5498a6420210cb7 | p10@SYNJ2 |
| 2.13e-35 | FFCP PHASE2:Mm9::chr11:117093260..117093293,+#_522d8dc80eba2d73ebf1dba811e8db79 | p34@Sept9 |
| 2.13e-35 | FFCP PHASE1:Mm9::chr11:117093260..117093293,+#_522d8dc80eba2d73ebf1dba811e8db79 | p34@Sept9 |
| 2.25e-35 | FFCP PHASE1:Hg19::chr3:147088197..147088208,-#_88e4a76e374fe43d743bc9a650d75cef | p@chr3:147088197..147088208, - |
| 2.25e-35 | FFCP PHASE2:Hg19::chr3:147088197..147088208,-#_88e4a76e374fe43d743bc9a650d75cef | p@chr3:147088197..147088208, - |
| 2.45e-34 | FFCP PHASE1:Hg19::chr7:140341251..140341265,-#_edad83fa2abcca54f5ade4ad925467a5 | p3@DENND2A |
| 2.45e-34 | FFCP PHASE2:Hg19::chr7:140341251..140341265,-#_edad83fa2abcca54f5ade4ad925467a5 | p3@DENND2A |
| 1.09e-30 | FFCP PHASE2:Hg19::chr11:60680190..60680212,+#_c874e68921e70150e950c1b7b22bcb15 | p@chr11:60680190..60680212, + |
| 1.09e-30 | FFCP PHASE1:Hg19::chr11:60680190..60680212,+#_c874e68921e70150e950c1b7b22bcb15 | p@chr11:60680190..60680212, + |
| 4.77e-30 | FFCP PHASE2:Mm9::chr2:119000878..119000908,-#_80d3cb42f64a42434988de468e67625a | p@chr2:119000878..119000908, - |
| 4.77e-30 | FFCP PHASE2:Mm9::chr19:54120233..54120243,+#_80d3cb42f64a42434988de468e67625a | p4@Adra2a |
| 4.77e-30 | FFCP PHASE1:Mm9::chr2:119000878..119000908,-#_80d3cb42f64a42434988de468e67625a | p@chr2:119000878..119000908, - |
| 4.77e-30 | FFCP PHASE1:Mm9::chr19:54120233..54120243,+#_80d3cb42f64a42434988de468e67625a | p4@Adra2a |
| 5.61e-30 | FFCP PHASE1:Hg19::chr17:48346424..48346435,+#_c74484cfa45e8d0d303ad8408d84e1ae | p@chr17:48346424..48346435, + |
| 5.61e-30 | FFCP PHASE2:Hg19::chr17:48346424..48346435,+#_c74484cfa45e8d0d303ad8408d84e1ae | p@chr17:48346424..48346435, + |
| 7.41e-26 | FFCP PHASE2:Hg19::chrX:136649632..136649652,+#_7ee0f6e24b007044ae7fb2186e94cdb3 | p@chrX:136649632..136649652, + |
| 7.41e-26 | FFCP PHASE1:Hg19::chrX:136649632..136649652,+#_7ee0f6e24b007044ae7fb2186e94cdb3 | p@chrX:136649632..136649652, + |
| 1.35e-25 | FFCP PHASE1:Mm9::chr5:28144366..28144367,-#_06cbffd1ac2556bbf03dfe1feaf4a470 | p@chr5:28144366..28144367, - |
| 1.35e-25 | FFCP PHASE2:Mm9::chr19:54120078..54120093,+#_06cbffd1ac2556bbf03dfe1feaf4a470 | p6@Adra2a |
| 1.35e-25 | FFCP PHASE2:Mm9::chr5:28144366..28144367,-#_06cbffd1ac2556bbf03dfe1feaf4a470 | p@chr5:28144366..28144367, - |
| 1.35e-25 | FFCP PHASE1:Mm9::chr19:54120078..54120093,+#_06cbffd1ac2556bbf03dfe1feaf4a470 | p6@Adra2a |
| 2.99e-25 | FFCP PHASE1:Hg19::chr2:202562763..202562772,-#_a590ccb2c8c18a334795107df285cd8d | p8@MPP4 |
| 2.99e-25 | FFCP PHASE2:Hg19::chr2:202562763..202562772,-#_a590ccb2c8c18a334795107df285cd8d | p8@MPP4 |
| 4.87e-25 | FFCP PHASE1:Hg19::chr14:61654271..61654282,+#_ecd29fceac3393b5f79de45eae556157 | p30@PRKCH |
| 4.87e-25 | FFCP PHASE2:Hg19::chr14:61654271..61654282,+#_ecd29fceac3393b5f79de45eae556157 | p30@PRKCH |
| 8.75e-25 | FFCP PHASE1:Hg19::chr3:147130332..147130352,+#_3a5cf7f78f81aa5207a6960a3691a938 | p@chr3:147130332..147130352, + |
| 8.75e-25 | FFCP PHASE2:Hg19::chr3:147130332..147130352,+#_3a5cf7f78f81aa5207a6960a3691a938 | p@chr3:147130332..147130352, + |
| 1.03e-24 | FFCP PHASE1:Hg19::chr3:147114260..147114290,-#_2cf14a7cfeb9c530708f20dcbf7636cb | p3@ZIC4 |
| 1.03e-24 | FFCP PHASE2:Hg19::chr3:147114260..147114290,-#_2cf14a7cfeb9c530708f20dcbf7636cb | p3@ZIC4 |
| 9.24e-24 | FFCP PHASE1:Hg19::chr3:147131185..147131202,+#_bcd2111a84b09c58cf6f6aafd3bd4a25 | p@chr3:147131185..147131202, + |
| 9.24e-24 | FFCP PHASE2:Hg19::chr3:147131185..147131202,+#_bcd2111a84b09c58cf6f6aafd3bd4a25 | p@chr3:147131185..147131202, + |
| 2.62e-23 | FFCP PHASE1:Hg19::chr10:74020629..74020634,-#_e91253e9e5bf705f888e4016b4abe078 | p@chr10:74020629..74020634, - |
| 2.62e-23 | FFCP PHASE2:Hg19::chr10:74020629..74020634,-#_e91253e9e5bf705f888e4016b4abe078 | p@chr10:74020629..74020634, - |
| 3.06e-23 | FFCP PHASE2:Mm9::chr5:136364908..136364912,+#_7538f03f4e9ac777ceb09b7e6d75f2de | p@chr5:136364908..136364912, + |
| 3.06e-23 | FFCP PHASE1:Mm9::chr5:136364908..136364912,+#_7538f03f4e9ac777ceb09b7e6d75f2de | p@chr5:136364908..136364912, + |
| 3.27e-23 | FFCP PHASE1:Hg19::chr3:147128275..147128285,+#_b9f3c24a6f30090773323a0058890b1b | p5@AB464362 |
| 3.27e-23 | FFCP PHASE2:Hg19::chr3:147128275..147128285,+#_b9f3c24a6f30090773323a0058890b1b | p5@AB464362 |
| 3.27e-23 | FFCP PHASE1:Hg19::chr2:202562827..202562835,-#_b9f3c24a6f30090773323a0058890b1b | p10@MPP4 |
| 3.27e-23 | FFCP PHASE2:Hg19::chr2:202562827..202562835,-#_b9f3c24a6f30090773323a0058890b1b | p10@MPP4 |
| 4.61e-23 | FFCP PHASE2:Hg19::chr10:69902750..69902779,+#_3997d6e35be6a1a99383bb2333f5921a | p@chr10:69902750..69902779, + |
| 4.61e-23 | FFCP PHASE1:Hg19::chr10:69902750..69902779,+#_3997d6e35be6a1a99383bb2333f5921a | p@chr10:69902750..69902779, + |
| 5.15e-23 | FFCP PHASE1:Hg19::chr12:108732917..108732935,-#_47b88df22beb157685ec6f71b37fc87d | p5@CMKLR1 |
| 5.15e-23 | FFCP PHASE2:Hg19::chr12:108732917..108732935,-#_47b88df22beb157685ec6f71b37fc87d | p5@CMKLR1 |
| 6.44e-23 | FFCP PHASE1:Hg19::chr3:147123837..147123848,-#_18d68e8149ff47707ff7b31779334988 | p7@ZIC4 |
| 6.44e-23 | FFCP PHASE2:Hg19::chr3:147123837..147123848,-#_18d68e8149ff47707ff7b31779334988 | p7@ZIC4 |
| 9.5e-23 | FFCP PHASE2:Mm9::chr17:45832371..45832382,+#_d466990909db5a38ecd5cf321fe48659 | p4@Mrpl14 |
| 9.5e-23 | FFCP PHASE1:Mm9::chr17:45832371..45832382,+#_d466990909db5a38ecd5cf321fe48659 | p4@Mrpl14 |
| 9.47e-22 | FFCP PHASE1:Hg19::chr20:2781623..2781635,-#_620139219beefd9d9502b682fdc86d4f | p5@CPXM1 |
| 9.47e-22 | FFCP PHASE2:Hg19::chr20:2781623..2781635,-#_620139219beefd9d9502b682fdc86d4f | p5@CPXM1 |
| 3.63e-21 | FFCP PHASE1:Hg19::chr10:112207187..112207199,-#_2228fb420243b3a626d1dcd1dc1bef8e | p@chr10:112207187..112207199, - |
| 3.63e-21 | FFCP PHASE2:Hg19::chr10:112207187..112207199,-#_2228fb420243b3a626d1dcd1dc1bef8e | p@chr10:112207187..112207199, - |
| 6.43e-21 | FFCP PHASE2:Mm9::chr19:10067446..10067483,-#_07c300917cd07218c3845571d48d98ca | p5@Best1, p5@LOC100504840 |
| 6.43e-21 | FFCP PHASE1:Mm9::chr19:10067446..10067483,-#_07c300917cd07218c3845571d48d98ca | p5@Best1, p5@LOC100504840 |
| 8.07e-21 | FFCP PHASE1:Mm9::chr2:35140218..35140229,+#_dd1076180b3cbe5f2138cb61d3d59f2b | p@chr2:35140218..35140229, + |
| 8.07e-21 | FFCP PHASE2:Mm9::chr2:35140218..35140229,+#_dd1076180b3cbe5f2138cb61d3d59f2b | p@chr2:35140218..35140229, + |
| 8.47e-21 | FFCP PHASE1:Hg19::chr6:151562148..151562162,+#_88085b522dda6d8c84817ad2a6ee700f | p@chr6:151562148..151562162, + |
| 8.47e-21 | FFCP PHASE2:Hg19::chr6:151562148..151562162,+#_88085b522dda6d8c84817ad2a6ee700f | p@chr6:151562148..151562162, + |
| 1.74e-20 | FFCP PHASE1:Hg19::chr3:147127489..147127503,+#_5c4866ad7944a9ddeb10104191664317 | p11@ZIC1 |
| 1.74e-20 | FFCP PHASE2:Hg19::chr3:147127489..147127503,+#_5c4866ad7944a9ddeb10104191664317 | p11@ZIC1 |
| 2.05e-20 | FFCP PHASE1:Hg19::chr9:6565462..6565475,-#_7208227c69955c7978f3d90905dbc631 | p5@GLDC |
| 2.05e-20 | FFCP PHASE2:Hg19::chr9:6565462..6565475,-#_7208227c69955c7978f3d90905dbc631 | p5@GLDC |
| 3.01e-20 | FFCP PHASE2:Hg19::chr3:147131775..147131783,+#_78fd5b4a11f9be5a7b87e58683bc3348 | p@chr3:147131775..147131783, + |
| 3.01e-20 | FFCP PHASE1:Hg19::chr3:147131775..147131783,+#_78fd5b4a11f9be5a7b87e58683bc3348 | p@chr3:147131775..147131783, + |
| 3.91e-20 | FFCP PHASE1:Mm9::chr11:86449013..86449037,-#_87c684b42bc23b76caebc69c12e40fc6 | p@chr11:86449013..86449037, - |
| 3.91e-20 | FFCP PHASE2:Mm9::chr11:86449013..86449037,-#_87c684b42bc23b76caebc69c12e40fc6 | p@chr11:86449013..86449037, - |
