UBERON:0000047: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=simple eye | |name=simple eye | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 17:04, 12 September 2014
| Name: | simple eye | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "An eye with one concave chamber. Note that 'simple' does not imply a reduced level of complexity or acuity." [Wikipedia:Eye#Simple_eyes] | ||
| Xrefs: |
| ||
| Subset: |
grouping_class uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000970(eye) |
|---|
Children
| is a: | UBERON:0000019 (camera-type eye) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10030-101E3 (retina, adult, pool1)
- 10268-104D7 (eye - vitreous humor, donor1)
- 10269-104D8
- 10270-104D9
- 10271-104E1
- 10272-104E2 (eye - muscle inferior rectus, donor1)
- 10296-104G8
- 10297-104G9 (eye - muscle superior, donor2)
- 10298-104H1 (eye - muscle lateral, donor2)
- 10299-104H2 (eye - muscle medial, donor2)
... further results Mouse (Mus musculus)
- 10030-101E3 (retina, adult, pool1)
- 10268-104D7 (eye - vitreous humor, donor1)
- 10269-104D8
- 10270-104D9
- 10271-104E1
- 10272-104E2 (eye - muscle inferior rectus, donor1)
- 10296-104G8
- 10297-104G9 (eye - muscle superior, donor2)
- 10298-104H1 (eye - muscle lateral, donor2)
- 10299-104H2 (eye - muscle medial, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000047 (simple eye), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.31e-86 | FFCP PHASE2:Mm9::chr16:21743134..21743139,-#_ba4fd8a25a6517d2dd42e6c88f43d05a | p@chr16:21743134..21743139, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31818106..31818119,+#_ba4fd8a25a6517d2dd42e6c88f43d05a | p@chr17:31818106..31818119, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr3:129525389..129525400,-#_ba4fd8a25a6517d2dd42e6c88f43d05a | p@chr3:129525389..129525400, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:77532283..77532316,-#_ba4fd8a25a6517d2dd42e6c88f43d05a | p@chr11:77532283..77532316, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr4:133799669..133799683,+#_ba4fd8a25a6517d2dd42e6c88f43d05a | p1@E130218I03Rik |
| 1.31e-86 | FFCP PHASE2:Mm9::chr14:118451218..118451221,-#_ba4fd8a25a6517d2dd42e6c88f43d05a | p4@Dct |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:3622163..3622187,-#_ba4fd8a25a6517d2dd42e6c88f43d05a | p8@Osbp2 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31817987..31818013,+#_ba4fd8a25a6517d2dd42e6c88f43d05a | p@chr17:31817987..31818013, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr10:127668442..127668453,+#_ba4fd8a25a6517d2dd42e6c88f43d05a | p@chr10:127668442..127668453, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr14:118451218..118451221,-#_ba4fd8a25a6517d2dd42e6c88f43d05a | p4@Dct |
| 1.31e-86 | FFCP PHASE1:Mm9::chr3:129525389..129525400,-#_ba4fd8a25a6517d2dd42e6c88f43d05a | p@chr3:129525389..129525400, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr9:89697580..89697585,-#_ba4fd8a25a6517d2dd42e6c88f43d05a | p1@Mir184 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31818263..31818276,+#_ba4fd8a25a6517d2dd42e6c88f43d05a | p@chr17:31818263..31818276, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31817987..31818013,+#_ba4fd8a25a6517d2dd42e6c88f43d05a | p@chr17:31817987..31818013, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr10:67364011..67364018,-#_ba4fd8a25a6517d2dd42e6c88f43d05a | p5@Zfp365 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:77532391..77532408,-#_ba4fd8a25a6517d2dd42e6c88f43d05a | p@chr11:77532391..77532408, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr9:89697580..89697585,-#_ba4fd8a25a6517d2dd42e6c88f43d05a | p1@Mir184 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr2:90827760..90827769,+#_ba4fd8a25a6517d2dd42e6c88f43d05a | p6@Celf1 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:77532283..77532316,-#_ba4fd8a25a6517d2dd42e6c88f43d05a | p@chr11:77532283..77532316, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr16:21743134..21743139,-#_ba4fd8a25a6517d2dd42e6c88f43d05a | p@chr16:21743134..21743139, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:3622192..3622225,-#_ba4fd8a25a6517d2dd42e6c88f43d05a | p3@Osbp2 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31818106..31818119,+#_ba4fd8a25a6517d2dd42e6c88f43d05a | p@chr17:31818106..31818119, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr10:127668442..127668453,+#_ba4fd8a25a6517d2dd42e6c88f43d05a | p@chr10:127668442..127668453, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr2:90827760..90827769,+#_ba4fd8a25a6517d2dd42e6c88f43d05a | p6@Celf1 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:3622163..3622187,-#_ba4fd8a25a6517d2dd42e6c88f43d05a | p8@Osbp2 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31818263..31818276,+#_ba4fd8a25a6517d2dd42e6c88f43d05a | p@chr17:31818263..31818276, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:77532391..77532408,-#_ba4fd8a25a6517d2dd42e6c88f43d05a | p@chr11:77532391..77532408, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr4:133799669..133799683,+#_ba4fd8a25a6517d2dd42e6c88f43d05a | p1@E130218I03Rik |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:3622192..3622225,-#_ba4fd8a25a6517d2dd42e6c88f43d05a | p3@Osbp2 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31815126..31815139,-#_ba4fd8a25a6517d2dd42e6c88f43d05a | p@chr17:31815126..31815139, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr10:67364011..67364018,-#_ba4fd8a25a6517d2dd42e6c88f43d05a | p5@Zfp365 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31815126..31815139,-#_ba4fd8a25a6517d2dd42e6c88f43d05a | p@chr17:31815126..31815139, - |
| 2.3e-78 | FFCP PHASE2:Mm9::chr10:127668637..127668650,+#_aad796e66d9e9805524899897545f1ba | p3@LOC100504989, p3@Timeless |
| 2.3e-78 | FFCP PHASE2:Mm9::chr7:64675015..64675028,+#_aad796e66d9e9805524899897545f1ba | p@chr7:64675015..64675028, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr7:64675015..64675028,+#_aad796e66d9e9805524899897545f1ba | p@chr7:64675015..64675028, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr10:127668637..127668650,+#_aad796e66d9e9805524899897545f1ba | p3@LOC100504989, p3@Timeless |
| 2.82e-78 | FFCP PHASE2:Mm9::chr2:105509100..105509107,+#_8f046ee9c320997b780b7355a7674db2 | p6@Pax6 |
| 2.82e-78 | FFCP PHASE1:Mm9::chr2:105509100..105509107,+#_8f046ee9c320997b780b7355a7674db2 | p6@Pax6 |
| 2.82e-78 | FFCP PHASE2:Mm9::chr6:97891135..97891147,+#_8f046ee9c320997b780b7355a7674db2 | p@chr6:97891135..97891147, + |
| 2.82e-78 | FFCP PHASE1:Mm9::chr6:97891135..97891147,+#_8f046ee9c320997b780b7355a7674db2 | p@chr6:97891135..97891147, + |
| 3.46e-78 | FFCP PHASE1:Mm9::chr14:49498256..49498278,+#_2058e52f9238564e02a31538c0b7e337 | p1@4933429O19Rik |
| 3.46e-78 | FFCP PHASE2:Mm9::chr14:49498256..49498278,+#_2058e52f9238564e02a31538c0b7e337 | p1@4933429O19Rik |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112696408..112696421,-#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr5:112696408..112696421, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:113507470..113507483,-#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr5:113507470..113507483, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:152166537..152166579,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p1@Pdc |
| 4.97e-77 | FFCP PHASE1:Mm9::chr10:127668799..127668810,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p5@LOC100504989, p5@Timeless |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112690636..112690656,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr5:112690636..112690656, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:38092602..38092616,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr1:38092602..38092616, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:113506006..113506025,-#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr5:113506006..113506025, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr3:34488839..34488876,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p1@ENSMUST00000173365 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr17:31817947..31817965,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr17:31817947..31817965, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr8:77582172..77582183,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr8:77582172..77582183, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112686483..112686494,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr5:112686483..112686494, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:65147201..65147212,-#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr1:65147201..65147212, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112690744..112690755,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr5:112690744..112690755, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr2:93906955..93906973,-#_14af3e92c1d106003f3b545fd8d2e6e9 | p2@Hsd17b12 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr11:95705150..95705170,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p3@Gngt2 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr7:29477874..29477889,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p6@Fbxo27 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112696408..112696421,-#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr5:112696408..112696421, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr4:19208009..19208054,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p1@Cngb3 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112675556..112675574,-#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr5:112675556..112675574, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr10:127668686..127668697,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p4@LOC100504989, p4@Timeless |
| 4.97e-77 | FFCP PHASE1:Mm9::chr14:35413322..35413333,-#_14af3e92c1d106003f3b545fd8d2e6e9 | p1@Opn4 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr16:56204438..56204451,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p1@Impg2 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr17:31818215..31818239,-#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr17:31818215..31818239, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr3:129525405..129525428,-#_14af3e92c1d106003f3b545fd8d2e6e9 | p1@Rrh |
| 4.97e-77 | FFCP PHASE2:Mm9::chr9:107964319..107964338,-#_14af3e92c1d106003f3b545fd8d2e6e9 | p11@Rnf123 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:113504891..113504916,-#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr5:113504891..113504916, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112675556..112675574,-#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr5:112675556..112675574, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr3:34488839..34488876,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p1@ENSMUST00000173365 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr10:93761330..93761358,-#_14af3e92c1d106003f3b545fd8d2e6e9 | p1@Gm4792 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr6:85969237..85969247,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr6:85969237..85969247, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr11:77532270..77532280,-#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr11:77532270..77532280, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr7:28282354..28282365,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr7:28282354..28282365, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr8:77582172..77582183,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr8:77582172..77582183, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112691047..112691066,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr5:112691047..112691066, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:38092602..38092616,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr1:38092602..38092616, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr14:35413322..35413333,-#_14af3e92c1d106003f3b545fd8d2e6e9 | p1@Opn4 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112698505..112698537,-#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr5:112698505..112698537, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112690729..112690741,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr5:112690729..112690741, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:113506190..113506202,-#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr5:113506190..113506202, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:65147224..65147236,-#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr1:65147224..65147236, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr10:127668480..127668491,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr10:127668480..127668491, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112688342..112688357,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr5:112688342..112688357, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr14:52730585..52730607,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p1@Rpgrip1 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:65147201..65147212,-#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr1:65147201..65147212, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:113506190..113506202,-#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr5:113506190..113506202, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:38092538..38092550,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr1:38092538..38092550, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr10:127668799..127668810,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p5@LOC100504989, p5@Timeless |
| 4.97e-77 | FFCP PHASE1:Mm9::chr17:31816514..31816526,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr17:31816514..31816526, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr3:129525435..129525448,-#_14af3e92c1d106003f3b545fd8d2e6e9 | p2@Rrh |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112690636..112690656,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr5:112690636..112690656, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:65149656..65149674,-#_14af3e92c1d106003f3b545fd8d2e6e9 | p2@Cryga |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112690963..112690994,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr5:112690963..112690994, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr4:19208009..19208054,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p1@Cngb3 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr7:28282354..28282365,+#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr7:28282354..28282365, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112681470..112681483,-#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr5:112681470..112681483, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112698505..112698537,-#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr5:112698505..112698537, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr3:129525405..129525428,-#_14af3e92c1d106003f3b545fd8d2e6e9 | p1@Rrh |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:113507470..113507483,-#_14af3e92c1d106003f3b545fd8d2e6e9 | p@chr5:113507470..113507483, - |
