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|located_in=
|located_in=
|name=epithelium
|name=epithelium
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=
|part_of=

Latest revision as of 17:10, 12 September 2014

Name:epithelium
Namespace:FANTOM
Definition:"Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina. Examples: simple squamous epithelium, glandular cuboidal epithelium, transitional epithelium, myoepithelium[CARO]." [CARO:MAH, Wikipedia:Epithelium]
Xrefs:
links:

AAO:0000144
AAO:0010055
AEO:0000066
BILA:0000066
BTO:0000416
CARO:0000066
EHDAA2:0003066
FBbt:00007005
FMA:9639
GAID:402
HAO:0000066
[ Tkanka_nablonkowa.png Tkanka_nablonkowa.png]
MESH:A.10.272
ncithesaurus:Epithelium
SCTID:31610004
TAO:0001486
VHOG:0000387
XAO:0003045

ZFA:0001486
Synonyms: "epithelial tissue" EXACT []
"portion of epithelium" EXACT [FMA:9639]
Alt_id: UBERON:CARO_0000066-FBbt_00007005-FMA_9639-XAO_0003045-ZFA_0001486
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000119(cell layer)
union_of:UBERON:0000486(multilaminar epithelium),UBERON:0000490(unilaminar epithelium)



Children

is a:UBERON:0000486 (multilaminar epithelium),UBERON:0000488 (atypical epithelium),UBERON:0000490 (unilaminar epithelium),UBERON:0003350 (epithelium of mucosa),UBERON:0003914 (epithelial tube),UBERON:0003929 (gut epithelium),UBERON:0004807 (respiratory system epithelium),UBERON:0004808 (gastrointestinal system epithelium),UBERON:0004819 (kidney epithelium),UBERON:0005157 (epithelial fold),UBERON:0005891 (coelomic epithelium),UBERON:0005911 (endo-epithelium),UBERON:0006799 (glandular epithelium),UBERON:0006914 (squamous epithelium),UBERON:0007503 (epithelial vesicle),UBERON:0007625 (pigment epithelium of eye),UBERON:0010077 (cuboidal epithelium),UBERON:0010371 (ecto-epithelium),FF:0011477 (Ileum epithelium 1h after RANKL),FF:0011479 (Ileum epithelium 3h after RANKL),UBERON:0012274 (columnar epithelium),UBERON:0012275 (meso-epithelium),UBERON:0015807 (ear epithelium),FF:10263-104D2 (Follicle Associated Epithelium, pool3)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000483 (epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
7.96e-40FFCP PHASE1:Hg19::chr16:56672571..56672587,+#_76e91f605c6deacc627f56d119a01b07p2@MT1A
7.96e-40FFCP PHASE2:Hg19::chr16:56672571..56672587,+#_76e91f605c6deacc627f56d119a01b07p2@MT1A
2.77e-39FFCP PHASE2:Hg19::chr22:30792980..30793047,+#_a6a095b18bb2b23cd27e73f97eab2dfcp1@SEC14L2
2.77e-39FFCP PHASE1:Hg19::chr22:30792980..30793047,+#_a6a095b18bb2b23cd27e73f97eab2dfcp1@SEC14L2
1.0e-38FFCP PHASE2:Hg19::chr2:26205550..26205624,-#_19e4626008ea7a2373af930f90ecf6c1p1@KIF3C
1.0e-38FFCP PHASE1:Hg19::chr2:26205550..26205624,-#_19e4626008ea7a2373af930f90ecf6c1p1@KIF3C
1.1e-38FFCP PHASE2:Hg19::chr5:148521047..148521076,+#_63033551edd4342fe7cd94a723ad076bp1@ABLIM3
1.1e-38FFCP PHASE1:Hg19::chr5:148521047..148521076,+#_63033551edd4342fe7cd94a723ad076bp1@ABLIM3
1.83e-37FFCP PHASE2:Hg19::chr3:52001448..52001478,-#_a5a059a0c2543caa3b89193ea95c3f2dp2@PCBP4
1.83e-37FFCP PHASE1:Hg19::chr3:52001448..52001478,-#_a5a059a0c2543caa3b89193ea95c3f2dp2@PCBP4
2.51e-37FFCP PHASE1:Hg19::chr18:47088419..47088437,+#_2d5f15e02930ed0cc6ef8c7db5bb58eep1@LIPG
2.51e-37FFCP PHASE2:Hg19::chr18:47088419..47088437,+#_2d5f15e02930ed0cc6ef8c7db5bb58eep1@LIPG
3.78e-37FFCP PHASE1:Hg19::chr3:52001426..52001447,-#_94a2e5fd072d7622d4c009764d46b8a9p3@PCBP4
3.78e-37FFCP PHASE2:Hg19::chr3:52001426..52001447,-#_94a2e5fd072d7622d4c009764d46b8a9p3@PCBP4
6.15e-37FFCP PHASE2:Hg19::chr1:85930830..85930858,-#_a18e8881dae1e8feb13e513cb0cc96dfp1@DDAH1
6.15e-37FFCP PHASE1:Hg19::chr1:85930830..85930858,-#_a18e8881dae1e8feb13e513cb0cc96dfp1@DDAH1
8.11e-37FFCP PHASE2:Hg19::chr11:60691924..60691966,+#_452ad3e1bc5505abee268e99cf6c183dp1@TMEM132A
8.11e-37FFCP PHASE1:Hg19::chr11:60691924..60691966,+#_452ad3e1bc5505abee268e99cf6c183dp1@TMEM132A
8.61e-37FFCP PHASE1:Hg19::chr2:242498138..242498179,+#_ea8d8b58986afda688e5aaa10e13470ep1@BOK
8.61e-37FFCP PHASE2:Hg19::chr2:242498138..242498179,+#_ea8d8b58986afda688e5aaa10e13470ep1@BOK
9.21e-37FFCP PHASE2:Hg19::chrX:140271249..140271333,-#_0e789491d28ba6dbc0229842a76309a2p1@LDOC1
9.21e-37FFCP PHASE1:Hg19::chrX:140271249..140271333,-#_0e789491d28ba6dbc0229842a76309a2p1@LDOC1
1.96e-36FFCP PHASE2:Hg19::chrX:128977781..128977869,-#_8a5dd207f9ba3b0306ae8106200f0f3fp1@ZDHHC9
1.96e-36FFCP PHASE1:Hg19::chrX:128977781..128977869,-#_8a5dd207f9ba3b0306ae8106200f0f3fp1@ZDHHC9
2.56e-36FFCP PHASE1:Hg19::chr17:73389854..73389993,-#_c28230304b8ab6052f7b2ee7f8847d99p2@GRB2
2.56e-36FFCP PHASE2:Hg19::chr17:73389854..73389993,-#_c28230304b8ab6052f7b2ee7f8847d99p2@GRB2
6.53e-36FFCP PHASE2:Hg19::chrX:140271349..140271401,-#_d657db560be5647f8a3da0ab9c1449ebp2@LDOC1
6.53e-36FFCP PHASE1:Hg19::chrX:140271349..140271401,-#_d657db560be5647f8a3da0ab9c1449ebp2@LDOC1
9.8e-36FFCP PHASE2:Hg19::chr2:26205340..26205381,-#_09ff3bb93ded5b4b7887f1cd4a662110p2@KIF3C
9.8e-36FFCP PHASE1:Hg19::chr2:26205340..26205381,-#_09ff3bb93ded5b4b7887f1cd4a662110p2@KIF3C
1.89e-35FFCP PHASE2:Hg19::chr22:41697520..41697613,+#_bd4fe46c91dca45d4b38a9254e4d1a99p1@ZC3H7B
1.89e-35FFCP PHASE1:Hg19::chr22:41697520..41697613,+#_bd4fe46c91dca45d4b38a9254e4d1a99p1@ZC3H7B
2.95e-35FFCP PHASE1:Hg19::chr4:17513702..17513720,-#_d771470916f378963c36fafcb23e41e7p1@QDPR
2.95e-35FFCP PHASE2:Hg19::chr4:17513702..17513720,-#_d771470916f378963c36fafcb23e41e7p1@QDPR
6.03e-35FFCP PHASE2:Hg19::chr15:44487453..44487476,-#_fd17b9fa1aba5d502e5dab4d1f540da3p1@FRMD5
6.03e-35FFCP PHASE1:Hg19::chr15:44487453..44487476,-#_fd17b9fa1aba5d502e5dab4d1f540da3p1@FRMD5
9.98e-35FFCP PHASE1:Hg19::chr19:54412517..54412583,+#_67ac59756e42fedb5cfe1f4ac056f354p1@CACNG7
9.98e-35FFCP PHASE2:Hg19::chr19:54412517..54412583,+#_67ac59756e42fedb5cfe1f4ac056f354p1@CACNG7
1.07e-34FFCP PHASE1:Hg19::chr1:20812690..20812763,-#_db6c6d820409941d1706d6e072088701p1@CAMK2N1
1.07e-34FFCP PHASE2:Hg19::chr1:20812690..20812763,-#_db6c6d820409941d1706d6e072088701p1@CAMK2N1
1.22e-34FFCP PHASE2:Hg19::chr16:58534039..58534056,+#_8afb884e523291e4b120babe7517abc0p1@NDRG4
1.22e-34FFCP PHASE1:Hg19::chr16:58534039..58534056,+#_8afb884e523291e4b120babe7517abc0p1@NDRG4
1.47e-34FFCP PHASE2:Hg19::chr10:15413224..15413308,-#_cf04c2e2625437c6b8b77684d1b94399p2@FAM171A1
1.47e-34FFCP PHASE1:Hg19::chr10:15413224..15413308,-#_cf04c2e2625437c6b8b77684d1b94399p2@FAM171A1
4.0e-34FFCP PHASE1:Hg19::chr11:125366089..125366207,-#_8d1b736e03409532322e9f5eceeb70a4p1@FEZ1
4.0e-34FFCP PHASE2:Hg19::chr11:125366089..125366207,-#_8d1b736e03409532322e9f5eceeb70a4p1@FEZ1
4.72e-34FFCP PHASE1:Hg19::chr4:145567297..145567355,+#_8ed72567f78ca148c35bd7969ea03f48p1@HHIP
4.72e-34FFCP PHASE2:Hg19::chr4:145567297..145567355,+#_8ed72567f78ca148c35bd7969ea03f48p1@HHIP
5.32e-34FFCP PHASE1:Hg19::chr19:54411852..54411908,+#_728f436fb4b26f342b80411bd45f9effp@chr19:54411852..54411908, +
5.32e-34FFCP PHASE2:Hg19::chr19:54411852..54411908,+#_728f436fb4b26f342b80411bd45f9effp@chr19:54411852..54411908, +
6.75e-34FFCP PHASE1:Hg19::chr16:765092..765169,+#_f6ba5d92624852985e3a6d679300fe7fp1@METRN
6.75e-34FFCP PHASE2:Hg19::chr16:765092..765169,+#_f6ba5d92624852985e3a6d679300fe7fp1@METRN
8.27e-34FFCP PHASE2:Hg19::chr3:52001396..52001425,-#_da29bed377641651a0f2bb16c489f818p4@PCBP4
8.27e-34FFCP PHASE1:Hg19::chr3:52001396..52001425,-#_da29bed377641651a0f2bb16c489f818p4@PCBP4
1.22e-33FFCP PHASE2:Hg19::chr3:170136642..170136663,+#_bdafbacc95038dc945c82726aaa1706fp1@CLDN11
1.22e-33FFCP PHASE1:Hg19::chr3:170136642..170136663,+#_bdafbacc95038dc945c82726aaa1706fp1@CLDN11
1.52e-33FFCP PHASE2:Hg19::chr22:38669002..38669024,-#_0428250f4421849cd364df92d9474cf8p1@TMEM184B
1.52e-33FFCP PHASE1:Hg19::chr22:38669002..38669024,-#_0428250f4421849cd364df92d9474cf8p1@TMEM184B
2.38e-33FFCP PHASE2:Hg19::chr19:48281989..48282000,+#_ba925ab9ad9c7e19b0e9ab76ae32e1adp3@SEPW1
2.38e-33FFCP PHASE1:Hg19::chr19:48281989..48282000,+#_ba925ab9ad9c7e19b0e9ab76ae32e1adp3@SEPW1
2.73e-33FFCP PHASE1:Hg19::chr10:15413035..15413131,-#_aee2f23640996dc9a749c60ada6b3cfep1@FAM171A1
2.73e-33FFCP PHASE2:Hg19::chr10:15413035..15413131,-#_aee2f23640996dc9a749c60ada6b3cfep1@FAM171A1
2.89e-33FFCP PHASE1:Hg19::chr16:89989741..89989759,+#_26d4267864c957fe25a6ca708299b61bp1@TUBB3
2.89e-33FFCP PHASE2:Hg19::chr16:89989741..89989759,+#_26d4267864c957fe25a6ca708299b61bp1@TUBB3
3.49e-33FFCP PHASE2:Hg19::chr2:127864608..127864688,-#_8ab208e708cb29122f8d996a7fc40b95p1@BIN1
3.49e-33FFCP PHASE1:Hg19::chr2:127864608..127864688,-#_8ab208e708cb29122f8d996a7fc40b95p1@BIN1
5.84e-33FFCP PHASE2:Hg19::chr17:40118805..40118822,+#_fab15ff5379421151e52c38588e2a052p1@CNP
5.84e-33FFCP PHASE1:Hg19::chr17:40118805..40118822,+#_fab15ff5379421151e52c38588e2a052p1@CNP
6.27e-33FFCP PHASE2:Hg19::chr17:19265883..19265958,-#_42595e05187953c28a206452b2523b09p1@B9D1
6.27e-33FFCP PHASE1:Hg19::chr17:19265883..19265958,-#_42595e05187953c28a206452b2523b09p1@B9D1
8.28e-33FFCP PHASE1:Hg19::chrX:134166360..134166371,+#_4737978c41c0d24707723e50e98a5768p2@FAM127A
8.28e-33FFCP PHASE2:Hg19::chrX:134166360..134166371,+#_4737978c41c0d24707723e50e98a5768p2@FAM127A
8.3e-33FFCP PHASE1:Hg19::chr2:27718052..27718127,-#_f6683b45a72e944624262ba922c43b48p1@FNDC4
8.3e-33FFCP PHASE2:Hg19::chr2:27718052..27718127,-#_f6683b45a72e944624262ba922c43b48p1@FNDC4
1.07e-32FFCP PHASE2:Hg19::chr3:48130707..48130789,-#_3defbd1ea708bbe4a91ff9ec97a06618p4@MAP4
1.07e-32FFCP PHASE1:Hg19::chr3:48130707..48130789,-#_3defbd1ea708bbe4a91ff9ec97a06618p4@MAP4
1.32e-32FFCP PHASE1:Hg19::chr1:153581416..153581458,-#_6806fdc0b6d278c9600d61d9161b006ep4@S100A16
1.32e-32FFCP PHASE2:Hg19::chr1:153581416..153581458,-#_6806fdc0b6d278c9600d61d9161b006ep4@S100A16
1.69e-32FFCP PHASE1:Hg19::chr20:30310656..30310685,-#_27a8311799952f24bc3ab18d387ed7dep1@BCL2L1
1.69e-32FFCP PHASE2:Hg19::chr20:30310656..30310685,-#_27a8311799952f24bc3ab18d387ed7dep1@BCL2L1
2.07e-32FFCP PHASE1:Hg19::chr3:48130317..48130396,-#_71cad29d132f6b7a6188cbb416084a9cp1@MAP4
2.07e-32FFCP PHASE2:Hg19::chr3:48130317..48130396,-#_71cad29d132f6b7a6188cbb416084a9cp1@MAP4
2.23e-32FFCP PHASE1:Hg19::chr9:14314566..14314618,-#_5b880dacef3dc529c1ce5c79d5ee52cbp1@NFIB
2.23e-32FFCP PHASE2:Hg19::chr9:14314566..14314618,-#_5b880dacef3dc529c1ce5c79d5ee52cbp1@NFIB
2.56e-32FFCP PHASE1:Hg19::chrX:134166376..134166394,+#_17a52e698630a7723c17e65a0aa2aaa7p1@FAM127A
2.56e-32FFCP PHASE2:Hg19::chrX:134166376..134166394,+#_17a52e698630a7723c17e65a0aa2aaa7p1@FAM127A
2.69e-32FFCP PHASE1:Hg19::chr20:62327996..62328013,+#_959daba4d91b71af48606ea101e467a5p1@TNFRSF6B
2.69e-32FFCP PHASE2:Hg19::chr20:62327996..62328013,+#_959daba4d91b71af48606ea101e467a5p1@TNFRSF6B
3.67e-32FFCP PHASE1:Hg19::chr4:145567767..145567851,+#_9b5052a7c7bbe273e9951edac23d66c0p2@HHIP
3.67e-32FFCP PHASE2:Hg19::chr4:145567767..145567851,+#_9b5052a7c7bbe273e9951edac23d66c0p2@HHIP
6.28e-32FFCP PHASE2:Hg19::chr19:46105411..46105481,-#_99aee4e4e101a9376cc85024025d4c5ap1@GPR4, p2@OPA3
6.28e-32FFCP PHASE1:Hg19::chr19:46105411..46105481,-#_99aee4e4e101a9376cc85024025d4c5ap1@GPR4, p2@OPA3
7.86e-32FFCP PHASE1:Hg19::chr1:20812315..20812327,-#_c9e5dbffcb271c7cbee684ba709b5d4fp4@CAMK2N1
7.86e-32FFCP PHASE2:Hg19::chr1:20812315..20812327,-#_c9e5dbffcb271c7cbee684ba709b5d4fp4@CAMK2N1
8.33e-32FFCP PHASE2:Hg19::chr9:14314131..14314147,-#_add3f5a591a2aad0250f7305d4378354p2@NFIB
8.33e-32FFCP PHASE1:Hg19::chr9:14314131..14314147,-#_add3f5a591a2aad0250f7305d4378354p2@NFIB
1.2e-31FFCP PHASE1:Hg19::chr9:132934622..132934699,+#_2c12c156110ee380853d6347da096e7ep1@NCS1
1.2e-31FFCP PHASE2:Hg19::chr9:132934622..132934699,+#_2c12c156110ee380853d6347da096e7ep1@NCS1
1.29e-31FFCP PHASE1:Hg19::chr1:79472365..79472443,-#_bbe6027643a0e1a3d255887ffcace202p1@ELTD1
1.29e-31FFCP PHASE2:Hg19::chr1:79472365..79472443,-#_bbe6027643a0e1a3d255887ffcace202p1@ELTD1










Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina.[CARO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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