Personal tools

UBERON:0001690: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
Line 14: Line 14:
|located_in=
|located_in=
|name=ear
|name=ear
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0000033;;UBERON:0002105
|part_of=UBERON:0000033;;UBERON:0002105

Latest revision as of 17:19, 12 September 2014

Name:ear
Namespace:FANTOM
Definition:"Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, Wikipedia:Ear]
Xrefs:
links:

AAO:0011014
BTO:0000368
EFO:0000826
EHDAA2:0000423
EHDAA:502
EMAPA:16193
EV:0100353
FMA:52780
GAID:62
galen:Ear
[1]
MA:0000236
MAT:0000138
MESH:A.01.456.313
MIAA:0000138
ncithesaurus:Ear
NIF_GrossAnatomy:birnlex_1062
OpenCyc:Mx4rvViXS5wpEbGdrcN5Y29ycA
OpenCyc:Mx4rvVjL05wpEbGdrcN5Y29ycA
SCTID:1910005
VHOG:0000330

XAO:0000189
Synonyms: "auditory apparatus" RELATED []
"auris" RELATED [BTO:0000368]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_52780-FMA_78500-MA_0000236-MIAA_0000138-XAO_0000189-ZFA_0001138
Subset: organ_slim
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000020(sense organ),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0000033(head),UBERON:0002105(vestibulo-auditory system)



Children

part of:UBERON:0001846 (internal ear),UBERON:0003069 (otic placode),UBERON:0015807 (ear epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001690 (ear), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr18:38104702..38104718, -
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr5:144115382..144115389, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_1d13cb136fd2abf98a4e0d45469142ffp4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr7:139597684..139597691, +
1.87e-86FFCP PHASE2:Mm9::chr1:63733478..63733491,-#_1d13cb136fd2abf98a4e0d45469142ffp1@Dytn
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_1d13cb136fd2abf98a4e0d45469142ffp1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr17:13983179..13983190, +
1.87e-86FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_1d13cb136fd2abf98a4e0d45469142ffp7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr1:43454162..43454170,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:43454162..43454170, -
1.87e-86FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_1d13cb136fd2abf98a4e0d45469142ffp2@Strc
1.87e-86FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_1d13cb136fd2abf98a4e0d45469142ffp1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr15:89215333..89215341,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr6:86745686..86745727, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_1d13cb136fd2abf98a4e0d45469142ffp1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr5:72652660..72652667, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr16:93971367..93971379, -
1.87e-86FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_1d13cb136fd2abf98a4e0d45469142ffp@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_1d13cb136fd2abf98a4e0d45469142ffp3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Otog
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_1d13cb136fd2abf98a4e0d45469142ffp3@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr9:50968647..50968668,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:50968647..50968668, -
1.87e-86FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_1d13cb136fd2abf98a4e0d45469142ffp7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr14:102297747..102297765, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_1d13cb136fd2abf98a4e0d45469142ffp9@Otof
1.87e-86FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr7:88068153..88068160,-#_1d13cb136fd2abf98a4e0d45469142ffp10@Sec11a
1.87e-86FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr12:13572961..13572974, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806047..80806059,-#_1d13cb136fd2abf98a4e0d45469142ffp4@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_1d13cb136fd2abf98a4e0d45469142ffp6@Jag1
1.87e-86FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_1d13cb136fd2abf98a4e0d45469142ffp2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr18:38104702..38104718, -
1.87e-86FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:194818647..194818660, -
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_1d13cb136fd2abf98a4e0d45469142ffp18@Trpm3
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_1d13cb136fd2abf98a4e0d45469142ffp2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr11:94371127..94371139,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr11:94371127..94371139, -
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr8:13414289..13414295, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr13:78257491..78257498, +
1.87e-86FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_1d13cb136fd2abf98a4e0d45469142ffp11@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:56208792..56208814, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_1d13cb136fd2abf98a4e0d45469142ffp1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr6:113251570..113251578, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349378..107349390,-#_1d13cb136fd2abf98a4e0d45469142ffp1@Otogl
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:172843813..172843834, -
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr17:13983160..13983167, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr11:102123535..102123544,+#_1d13cb136fd2abf98a4e0d45469142ffp5@BC030867
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Kcna10
1.87e-86FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_1d13cb136fd2abf98a4e0d45469142ffp3@Ptprq
1.87e-86FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_1d13cb136fd2abf98a4e0d45469142ffp5@BC030867
1.87e-86FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_1d13cb136fd2abf98a4e0d45469142ffp1@Strc
1.87e-86FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_1d13cb136fd2abf98a4e0d45469142ffp13@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr4:151505798..151505818,-#_1d13cb136fd2abf98a4e0d45469142ffp21@Espn
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:65641779..65641790, +
1.87e-86FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr18:42158627..42158630, -
1.87e-86FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr2:128881546..128881553, -
1.87e-86FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:12848147..12848162, +
1.87e-86FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr5:150945209..150945220, +
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr10:81091447..81091464,+#_1d13cb136fd2abf98a4e0d45469142ffp9@Ankrd24
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr3:154693281..154693317, -
1.87e-86FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_1d13cb136fd2abf98a4e0d45469142ffp10@Tecta
1.87e-86FFCP PHASE2:Mm9::chr16:45693840..45693856,-#_1d13cb136fd2abf98a4e0d45469142ffp1@Tmprss7
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_1d13cb136fd2abf98a4e0d45469142ffp3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_1d13cb136fd2abf98a4e0d45469142ffp3@Strc
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_1d13cb136fd2abf98a4e0d45469142ffp2@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_1d13cb136fd2abf98a4e0d45469142ffp2@Plscr5

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0001690&oldid=3277264"