UBERON:0002546: Difference between revisions
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|located_in= | |located_in= | ||
|name=cranial placode | |name=cranial placode | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000033 | |part_of=UBERON:0000033 | ||
Latest revision as of 17:33, 12 September 2014
| Name: | cranial placode | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Ectodermal placode that develops in the head into a part of the sensory nervous system. With a few exceptions (lens, adenohypophyseal), cranial placodes are neurogenic" https://github.com/seger/aao/issues/4, UBERON:cjm | ||
| Xrefs: |
| ||
| Synonyms: | "placode" BROAD [Wikipedia:Placode] | ||
| Comments: | Editor note: to avoid confusion, we include neurogenic placode as a subclass. Do not merge. Terminological notes: The term placode or placodes also applies to developing organs such as teeth, mammary glands, hair follicles, feathers and scales. We include a separate parent class for this. Taxon notes: Comparisons of developmental gene expression suggest that the anterior ectoderm in amphioxus may be homologous to the vertebrate olfactory placode, the only vertebrate placode with primary, not secondary, neurons[PMID:11523831]. | ||
| Alt_id: | UBERON:MIAA_0000369-XAO_0000305 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005085(ectodermal placode) |
|---|---|
| part_of: | UBERON:0000033(head) |
Children
| is a: | UBERON:0003073 (lens placode),UBERON:0009122 (adenohypophyseal placode),UBERON:0009955 (neurogenic placode) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002546 (cranial placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.41e-88 | FFCP PHASE2:Hg19::chr22:25595823..25595826,+#_d7408ddd600950bd0d37a333082a72a5 | p1@CRYBB3 |
| 1.41e-88 | FFCP PHASE1:Hg19::chr22:25595823..25595826,+#_d7408ddd600950bd0d37a333082a72a5 | p1@CRYBB3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_e751c663870c04b3e9be3a6d17109921 | p@chr3:31585340..31585360, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_e751c663870c04b3e9be3a6d17109921 | p@chr1:172843796..172843799, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_e751c663870c04b3e9be3a6d17109921 | p9@Otof |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_e751c663870c04b3e9be3a6d17109921 | p@chr3:154459231..154459240, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_e751c663870c04b3e9be3a6d17109921 | p3@Ptprq |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:97806034..97806061,+#_e751c663870c04b3e9be3a6d17109921 | p@chr15:97806034..97806061, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_e751c663870c04b3e9be3a6d17109921 | p@chr14:20649897..20649907, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:108316802..108316807,-#_e751c663870c04b3e9be3a6d17109921 | p@chr10:108316802..108316807, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_e751c663870c04b3e9be3a6d17109921 | p@chr14:102297747..102297765, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:50968647..50968668,-#_e751c663870c04b3e9be3a6d17109921 | p@chr9:50968647..50968668, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:63099970..63099980,-#_e751c663870c04b3e9be3a6d17109921 | p@chr14:63099970..63099980, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_e751c663870c04b3e9be3a6d17109921 | p9@Otof |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_e751c663870c04b3e9be3a6d17109921 | p@chr12:13572961..13572974, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_e751c663870c04b3e9be3a6d17109921 | p2@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_e751c663870c04b3e9be3a6d17109921 | p@chr9:42207375..42207384, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_e751c663870c04b3e9be3a6d17109921 | p1@Gm1322 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_e751c663870c04b3e9be3a6d17109921 | p6@Jag1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_e751c663870c04b3e9be3a6d17109921 | p@chr3:35012397..35012405, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_e751c663870c04b3e9be3a6d17109921 | p3@Kncn |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_e751c663870c04b3e9be3a6d17109921 | p@chr17:13983102..13983126, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_e751c663870c04b3e9be3a6d17109921 | p@chr18:38104702..38104718, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:94371127..94371139,-#_e751c663870c04b3e9be3a6d17109921 | p@chr11:94371127..94371139, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_e751c663870c04b3e9be3a6d17109921 | p2@Plscr5 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_e751c663870c04b3e9be3a6d17109921 | p@chr9:42206730..42206739, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_e751c663870c04b3e9be3a6d17109921 | p@chr3:58626291..58626298, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_e751c663870c04b3e9be3a6d17109921 | p1@Kncn |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_e751c663870c04b3e9be3a6d17109921 | p@chr5:3909290..3909299, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_e751c663870c04b3e9be3a6d17109921 | p2@Espnl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_e751c663870c04b3e9be3a6d17109921 | p18@Trpm3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_e751c663870c04b3e9be3a6d17109921 | p3@Fanca |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_e751c663870c04b3e9be3a6d17109921 | p2@Otol1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_e751c663870c04b3e9be3a6d17109921 | p@chr8:13414289..13414295, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_e751c663870c04b3e9be3a6d17109921 | p1@Tectb |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_e751c663870c04b3e9be3a6d17109921 | p@chr13:78257491..78257498, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_e751c663870c04b3e9be3a6d17109921 | p@chr18:81327205..81327211, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_e751c663870c04b3e9be3a6d17109921 | p@chr11:11599532..11599539, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_e751c663870c04b3e9be3a6d17109921 | p@chr12:77084875..77084885, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_e751c663870c04b3e9be3a6d17109921 | p@chr11:4689776..4689785, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_e751c663870c04b3e9be3a6d17109921 | p@chr3:100724698..100724706, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_e751c663870c04b3e9be3a6d17109921 | p@chr19:10536797..10536802, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_e751c663870c04b3e9be3a6d17109921 | p@chr9:56208792..56208814, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_e751c663870c04b3e9be3a6d17109921 | p@chr6:113251570..113251578, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_e751c663870c04b3e9be3a6d17109921 | p@chr13:48087761..48087775, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_e751c663870c04b3e9be3a6d17109921 | p2@9230102O04Rik |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:107349392..107349413,-#_e751c663870c04b3e9be3a6d17109921 | p2@Otogl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_e751c663870c04b3e9be3a6d17109921 | p1@Tectb |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_e751c663870c04b3e9be3a6d17109921 | p@chr7:139597684..139597691, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:80806020..80806031,-#_e751c663870c04b3e9be3a6d17109921 | p3@Gipc3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_e751c663870c04b3e9be3a6d17109921 | p1@Kcna10 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_e751c663870c04b3e9be3a6d17109921 | p4@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_e751c663870c04b3e9be3a6d17109921 | p@chr2:75320183..75320189, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_e751c663870c04b3e9be3a6d17109921 | p@chr17:13983179..13983190, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:63733478..63733491,-#_e751c663870c04b3e9be3a6d17109921 | p1@Dytn |
| 1.87e-86 | FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_e751c663870c04b3e9be3a6d17109921 | p@chrX:154140800..154140810, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_e751c663870c04b3e9be3a6d17109921 | p@chr15:65641779..65641790, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_e751c663870c04b3e9be3a6d17109921 | p7@A730017C20Rik |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:43454162..43454170,-#_e751c663870c04b3e9be3a6d17109921 | p@chr1:43454162..43454170, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_e751c663870c04b3e9be3a6d17109921 | p5@Otogl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_e751c663870c04b3e9be3a6d17109921 | p@chr11:75421384..75421397, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_e751c663870c04b3e9be3a6d17109921 | p1@Espnl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_e751c663870c04b3e9be3a6d17109921 | p1@Tmprss3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_e751c663870c04b3e9be3a6d17109921 | p@chr14:47293487..47293493, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_e751c663870c04b3e9be3a6d17109921 | p@chr1:172843813..172843834, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_e751c663870c04b3e9be3a6d17109921 | p@chr18:42158627..42158630, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_e751c663870c04b3e9be3a6d17109921 | p@chr9:42207697..42207705, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_e751c663870c04b3e9be3a6d17109921 | p@chr16:93971367..93971379, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_e751c663870c04b3e9be3a6d17109921 | p@chr13:78257491..78257498, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_e751c663870c04b3e9be3a6d17109921 | p1@Otog |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_e751c663870c04b3e9be3a6d17109921 | p13@Tsga14 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_e751c663870c04b3e9be3a6d17109921 | p4@BC030867 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_e751c663870c04b3e9be3a6d17109921 | p3@Tmprss3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_e751c663870c04b3e9be3a6d17109921 | p@chr15:12848147..12848162, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:88068153..88068160,-#_e751c663870c04b3e9be3a6d17109921 | p10@Sec11a |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_e751c663870c04b3e9be3a6d17109921 | p@chr6:86745686..86745727, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_e751c663870c04b3e9be3a6d17109921 | p@chr11:4689776..4689785, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_e751c663870c04b3e9be3a6d17109921 | p@chr1:194818647..194818660, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_e751c663870c04b3e9be3a6d17109921 | p1@Grxcr1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_e751c663870c04b3e9be3a6d17109921 | p7@Glt25d2 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_e751c663870c04b3e9be3a6d17109921 | p@chr3:154693281..154693317, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_e751c663870c04b3e9be3a6d17109921 | p3@Fanca |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_e751c663870c04b3e9be3a6d17109921 | p3@Strc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:108316802..108316807,-#_e751c663870c04b3e9be3a6d17109921 | p@chr10:108316802..108316807, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:80806047..80806059,-#_e751c663870c04b3e9be3a6d17109921 | p4@Gipc3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_e751c663870c04b3e9be3a6d17109921 | p@chr6:86746562..86746579, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_e751c663870c04b3e9be3a6d17109921 | p5@Fer1l6 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_e751c663870c04b3e9be3a6d17109921 | p@chr7:141605556..141605563, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_e751c663870c04b3e9be3a6d17109921 | p@chr1:194818647..194818660, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_e751c663870c04b3e9be3a6d17109921 | p6@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:43699188..43699216,+#_e751c663870c04b3e9be3a6d17109921 | p@chr13:43699188..43699216, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_e751c663870c04b3e9be3a6d17109921 | p@chr1:172843813..172843834, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_e751c663870c04b3e9be3a6d17109921 | p@chr3:154459246..154459253, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_e751c663870c04b3e9be3a6d17109921 | p@chr4:130461150..130461185, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_e751c663870c04b3e9be3a6d17109921 | p11@Tsga14 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_e751c663870c04b3e9be3a6d17109921 | p1@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_e751c663870c04b3e9be3a6d17109921 | p@chr9:42207397..42207408, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_e751c663870c04b3e9be3a6d17109921 | p@chr11:114603036..114603048, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_e751c663870c04b3e9be3a6d17109921 | p@chr11:75421384..75421397, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_e751c663870c04b3e9be3a6d17109921 | p@chr4:63079735..63079745, - |
