UBERON:0003051: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=ear vesicle | |name=ear vesicle | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000922;;UBERON:0000924 | |part_of=UBERON:0000922;;UBERON:0000924 | ||
Latest revision as of 17:35, 12 September 2014
| Name: | ear vesicle | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The saccular invagination of ectoderm from which the vertebrate inner ear develops[BTO]. Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells[ZFA]. epithelial sac of invaginated ectoderm formed from the otic placode that gives rise to the structures of the inner ear[MP]" [BTO:0002661, MP:0009806, Wikipedia:Otic_vesicle, ZFIN:curator] | ||
| Xrefs: |
| ||
| Synonyms: |
"auditory vesicle" RELATED [BTO:0002661] "otic vesicle" EXACT [] "otocyst" RELATED [] "OV" RELATED [] | ||
| Alt_id: |
UBERON:0004373 UBERON:XAO_0000006-ZFA_0000051 | ||
| Subset: | vertebrate_core |
Gray40.png]
200px-Gray40.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005291(embryonic tissue),UBERON:0007497(developing epithelial placode),UBERON:0010314(structure with developmental contribution from neural crest),UBERON:0010371(ecto-epithelium) |
|---|---|
| develops_from: | UBERON:0009123(otic cup) |
| part_of: | UBERON:0000922(embryo),UBERON:0000924(ectoderm) |
Children
| develops from: | UBERON:0001846 (internal ear),UBERON:0012175 (acoustico-facial VII-VIII ganglion complex) |
|---|---|
| part of: | UBERON:0005641 (otocyst epithelium) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003051 (ear vesicle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:108316802..108316807,-#_75fc3970308be340c9f348f4c3017776 | p@chr10:108316802..108316807, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_75fc3970308be340c9f348f4c3017776 | p2@Strc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_75fc3970308be340c9f348f4c3017776 | p@chr17:27252925..27252939, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_75fc3970308be340c9f348f4c3017776 | p9@Ankrd24 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_75fc3970308be340c9f348f4c3017776 | p@chr1:78523144..78523177, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_75fc3970308be340c9f348f4c3017776 | p1@Otog |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_75fc3970308be340c9f348f4c3017776 | p@chr5:3909310..3909321, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_75fc3970308be340c9f348f4c3017776 | p@chr14:31283072..31283081, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_75fc3970308be340c9f348f4c3017776 | p@chr11:75421384..75421397, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_75fc3970308be340c9f348f4c3017776 | p@chr1:43454162..43454170, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_75fc3970308be340c9f348f4c3017776 | p6@Fam70b |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_75fc3970308be340c9f348f4c3017776 | p@chr17:13983160..13983167, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_75fc3970308be340c9f348f4c3017776 | p13@Tsga14 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_75fc3970308be340c9f348f4c3017776 | p@chr11:89702580..89702593, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_75fc3970308be340c9f348f4c3017776 | p@chr3:100724698..100724706, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_75fc3970308be340c9f348f4c3017776 | p2@Gm1322 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_75fc3970308be340c9f348f4c3017776 | p5@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_75fc3970308be340c9f348f4c3017776 | p6@Fam70b |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_75fc3970308be340c9f348f4c3017776 | p2@uc007rhb.1 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_75fc3970308be340c9f348f4c3017776 | p@chr1:172843847..172843880, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_75fc3970308be340c9f348f4c3017776 | p@chr1:182528388..182528403, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_75fc3970308be340c9f348f4c3017776 | p2@Gpr152 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_75fc3970308be340c9f348f4c3017776 | p@chr4:133802857..133802884, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_75fc3970308be340c9f348f4c3017776 | p@chr19:10536797..10536802, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_75fc3970308be340c9f348f4c3017776 | p@chr17:13983179..13983190, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207965..42207978,-#_75fc3970308be340c9f348f4c3017776 | p5@Tecta |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_75fc3970308be340c9f348f4c3017776 | p@chr9:42206784..42206793, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_75fc3970308be340c9f348f4c3017776 | p2@Tectb |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:21371424..21371435,-#_75fc3970308be340c9f348f4c3017776 | p2@Slc26a5 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_75fc3970308be340c9f348f4c3017776 | p2@Fscn2 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:35012425..35012439,+#_75fc3970308be340c9f348f4c3017776 | p@chr3:35012425..35012439, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_75fc3970308be340c9f348f4c3017776 | p@chr15:89215319..89215330, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_75fc3970308be340c9f348f4c3017776 | p3@Epyc |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_75fc3970308be340c9f348f4c3017776 | p4@BC030867 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_75fc3970308be340c9f348f4c3017776 | p@chr5:28035962..28035983, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:172843796..172843799,-#_75fc3970308be340c9f348f4c3017776 | p@chr1:172843796..172843799, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_75fc3970308be340c9f348f4c3017776 | p@chr3:81012915..81012923, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_75fc3970308be340c9f348f4c3017776 | p4@Otogl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_75fc3970308be340c9f348f4c3017776 | p1@Grxcr1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_75fc3970308be340c9f348f4c3017776 | p@chr18:66033526..66033539, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr16:93971357..93971363,-#_75fc3970308be340c9f348f4c3017776 | p@chr16:93971357..93971363, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_75fc3970308be340c9f348f4c3017776 | p@chr1:93235228..93235249, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_75fc3970308be340c9f348f4c3017776 | p@chr15:12848147..12848162, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_75fc3970308be340c9f348f4c3017776 | p@chr4:154208086..154208123, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_75fc3970308be340c9f348f4c3017776 | p2@Tmprss3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:154459184..154459195,+#_75fc3970308be340c9f348f4c3017776 | p@chr3:154459184..154459195, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_75fc3970308be340c9f348f4c3017776 | p@chr13:78257518..78257522, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_75fc3970308be340c9f348f4c3017776 | p@chr1:16651649..16651655, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:102297728..102297742,+#_75fc3970308be340c9f348f4c3017776 | p@chr14:102297728..102297742, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_75fc3970308be340c9f348f4c3017776 | p7@Pkn3 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_75fc3970308be340c9f348f4c3017776 | p@chr13:43699228..43699239, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:30710416..30710440,-#_75fc3970308be340c9f348f4c3017776 | p2@Otof |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42206784..42206793,-#_75fc3970308be340c9f348f4c3017776 | p@chr9:42206784..42206793, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:67011941..67011951,+#_75fc3970308be340c9f348f4c3017776 | p3@Gm1322 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_75fc3970308be340c9f348f4c3017776 | p@chr12:109905399..109905416, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_75fc3970308be340c9f348f4c3017776 | p@chr14:102297728..102297742, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_75fc3970308be340c9f348f4c3017776 | p@chr9:50968647..50968668, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_75fc3970308be340c9f348f4c3017776 | p4@Gipc3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_75fc3970308be340c9f348f4c3017776 | p@chr11:8405038..8405048, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_75fc3970308be340c9f348f4c3017776 | p4@Chrna10 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_75fc3970308be340c9f348f4c3017776 | p1@Tmc1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_75fc3970308be340c9f348f4c3017776 | p@chr14:47293496..47293510, - |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_75fc3970308be340c9f348f4c3017776 | p2@9230102O04Rik |
| 1.87e-86 | FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_75fc3970308be340c9f348f4c3017776 | p5@Otogl |
| 1.87e-86 | FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_75fc3970308be340c9f348f4c3017776 | p3@Tmprss3 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_75fc3970308be340c9f348f4c3017776 | p11@Tecta |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:13414266..13414279,+#_75fc3970308be340c9f348f4c3017776 | p@chr8:13414266..13414279, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:78257454..78257465,+#_75fc3970308be340c9f348f4c3017776 | p@chr13:78257454..78257465, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_75fc3970308be340c9f348f4c3017776 | p@chr15:89215306..89215315, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_75fc3970308be340c9f348f4c3017776 | p1@Tomt |
| 1.87e-86 | FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_75fc3970308be340c9f348f4c3017776 | p10@Otof |
| 1.87e-86 | FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_75fc3970308be340c9f348f4c3017776 | p@chr14:20649897..20649907, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_75fc3970308be340c9f348f4c3017776 | p@chr18:81327205..81327211, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_75fc3970308be340c9f348f4c3017776 | p@chr2:73232344..73232356, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_75fc3970308be340c9f348f4c3017776 | p2@Espnl |
| 1.87e-86 | FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_75fc3970308be340c9f348f4c3017776 | p10@Sec11a |
| 1.87e-86 | FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_75fc3970308be340c9f348f4c3017776 | p@chr12:109905399..109905416, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_75fc3970308be340c9f348f4c3017776 | p@chr3:31585340..31585360, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_75fc3970308be340c9f348f4c3017776 | p@chr4:101908153..101908163, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_75fc3970308be340c9f348f4c3017776 | p@chr16:93971357..93971363, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_75fc3970308be340c9f348f4c3017776 | p@chr8:94180607..94180619, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_75fc3970308be340c9f348f4c3017776 | p@chr2:170417150..170417155, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_75fc3970308be340c9f348f4c3017776 | p@chr13:58283583..58283607, - |
| 1.87e-86 | FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_75fc3970308be340c9f348f4c3017776 | p1@Kncn |
| 1.87e-86 | FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_75fc3970308be340c9f348f4c3017776 | p7@A730017C20Rik |
| 1.87e-86 | FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_75fc3970308be340c9f348f4c3017776 | p@chr8:13414289..13414295, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_75fc3970308be340c9f348f4c3017776 | p@chr9:66860888..66860899, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_75fc3970308be340c9f348f4c3017776 | p@chr2:53464178..53464186, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_75fc3970308be340c9f348f4c3017776 | p11@Tecta |
| 1.87e-86 | FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_75fc3970308be340c9f348f4c3017776 | p3@Epyc |
| 1.87e-86 | FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_75fc3970308be340c9f348f4c3017776 | p3@Strc |
| 1.87e-86 | FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_75fc3970308be340c9f348f4c3017776 | p11@Tsga14 |
| 1.87e-86 | FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_75fc3970308be340c9f348f4c3017776 | p@chr6:113251570..113251578, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_75fc3970308be340c9f348f4c3017776 | p@chr12:13508015..13508019, + |
| 1.87e-86 | FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_75fc3970308be340c9f348f4c3017776 | p@chr15:65641741..65641748, + |
| 1.87e-86 | FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_75fc3970308be340c9f348f4c3017776 | p15@Mctp1 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_75fc3970308be340c9f348f4c3017776 | p41@Cacnb2 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_75fc3970308be340c9f348f4c3017776 | p2@Slc26a5 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr11:120222470..120222516,+#_75fc3970308be340c9f348f4c3017776 | p2@Fscn2 |
| 1.87e-86 | FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_75fc3970308be340c9f348f4c3017776 | p@chr17:13983179..13983190, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
