UBERON:0003296: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=gland of diencephalon | |name=gland of diencephalon | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001894 | |part_of=UBERON:0001894 | ||
Latest revision as of 17:39, 12 September 2014
| Name: | gland of diencephalon | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A gland that is part of a diencephalon [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: |
"between brain gland" EXACT [OBOL:automatic] "diencephalon gland" EXACT [OBOL:automatic] "gland of between brain" EXACT [OBOL:automatic] "gland of interbrain" EXACT [OBOL:automatic] "gland of mature diencephalon" EXACT [OBOL:automatic] "interbrain gland" EXACT [OBOL:automatic] "mature diencephalon gland" EXACT [OBOL:automatic] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002530(gland),UBERON:0004121(ectoderm-derived structure) |
|---|---|
| part_of: | UBERON:0001894(diencephalon) |
Children
| is a: | UBERON:0000007 (pituitary gland),UBERON:0001905 (pineal body) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10160-103A7 (pineal gland, adult, donor10252)
- 10162-103A9 (pituitary gland, adult, donor10252)
- 10179-103C8 (pineal gland - adult, donor10196)
- 10180-103C9 (pituitary gland - adult, donor10196)
- 10377-105G8 (pineal gland, adult, donor10258)
- 10378-105G9 (pituitary gland, adult, donor10258)
- 11649-122E2
- 11726-123D7
- 11744-123F7
- 1265-44F5 (pituitary gland, embryo E17)
... further results Mouse (Mus musculus)
- 10160-103A7 (pineal gland, adult, donor10252)
- 10162-103A9 (pituitary gland, adult, donor10252)
- 10179-103C8 (pineal gland - adult, donor10196)
- 10180-103C9 (pituitary gland - adult, donor10196)
- 10377-105G8 (pineal gland, adult, donor10258)
- 10378-105G9 (pituitary gland, adult, donor10258)
- 11649-122E2
- 11726-123D7
- 11744-123F7
- 1265-44F5 (pituitary gland, embryo E17)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003296 (gland of diencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.57e-195 | FFCP PHASE2:Hg19::chr19:7979708..7979734,+#_041e7e095e0433a5f5e2a2f6abfd85af | p@chr19:7979708..7979734, + |
| 2.57e-195 | FFCP PHASE1:Hg19::chr19:7979708..7979734,+#_041e7e095e0433a5f5e2a2f6abfd85af | p@chr19:7979708..7979734, + |
| 1.0e-156 | FFCP PHASE1:Hg19::chr5:136328571..136328599,-#_a1bc2e9d68446f0c07516434f3605aee | p11@SPOCK1 |
| 1.0e-156 | FFCP PHASE2:Hg19::chr5:136328571..136328599,-#_a1bc2e9d68446f0c07516434f3605aee | p11@SPOCK1 |
| 1.5e-156 | FFCP PHASE1:Hg19::chr12:128210626..128210641,-#_b3480ceef493666046a1c06662b262ce | p@chr12:128210626..128210641, - |
| 1.5e-156 | FFCP PHASE2:Hg19::chr12:128210626..128210641,-#_b3480ceef493666046a1c06662b262ce | p@chr12:128210626..128210641, - |
| 6.94e-147 | FFCP PHASE1:Hg19::chr19:7979677..7979703,+#_3c7fe58ee68581c87674381e7310afbe | p@chr19:7979677..7979703, + |
| 6.94e-147 | FFCP PHASE2:Hg19::chr19:49519930..49519937,-#_3c7fe58ee68581c87674381e7310afbe | p@chr19:49519930..49519937, - |
| 6.94e-147 | FFCP PHASE2:Hg19::chr19:7979644..7979653,+#_3c7fe58ee68581c87674381e7310afbe | p@chr19:7979644..7979653, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr19:49519930..49519937,-#_3c7fe58ee68581c87674381e7310afbe | p@chr19:49519930..49519937, - |
| 6.94e-147 | FFCP PHASE2:Hg19::chr19:49520344..49520367,-#_3c7fe58ee68581c87674381e7310afbe | p1@LHB |
| 6.94e-147 | FFCP PHASE1:Hg19::chr19:7979644..7979653,+#_3c7fe58ee68581c87674381e7310afbe | p@chr19:7979644..7979653, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr19:49520344..49520367,-#_3c7fe58ee68581c87674381e7310afbe | p1@LHB |
| 6.94e-147 | FFCP PHASE2:Hg19::chr19:7979677..7979703,+#_3c7fe58ee68581c87674381e7310afbe | p@chr19:7979677..7979703, + |
| 2.79e-131 | FFCP PHASE2:Hg19::chr1:99693441..99693485,-#_162ecb6a52ab7532e623acb216eb7a11 | p@chr1:99693441..99693485, - |
| 2.79e-131 | FFCP PHASE1:Hg19::chr1:99693441..99693485,-#_162ecb6a52ab7532e623acb216eb7a11 | p@chr1:99693441..99693485, - |
| 1.07e-130 | FFCP PHASE1:Hg19::chr5:133772179..133772191,+#_19e6ecc5ca8f9d9c1a5a6040e217ff51 | p5@ENST00000513329 |
| 1.07e-130 | FFCP PHASE2:Hg19::chr5:133772179..133772191,+#_19e6ecc5ca8f9d9c1a5a6040e217ff51 | p5@ENST00000513329 |
| 1.0e-112 | FFCP PHASE1:Hg19::chr5:141783725..141783734,+#_daffbf8b60612fd06df6d1c34b4f6cf5 | p3@ENST00000443800 |
| 1.0e-112 | FFCP PHASE2:Hg19::chr5:141783725..141783734,+#_daffbf8b60612fd06df6d1c34b4f6cf5 | p3@ENST00000443800 |
| 1.76e-111 | FFCP PHASE1:Hg19::chr9:139096968..139096979,-#_547c296569933891330becae011cbbca | p2@LHX3 |
| 1.76e-111 | FFCP PHASE2:Hg19::chr9:139096968..139096979,-#_547c296569933891330becae011cbbca | p2@LHX3 |
| 8.91e-111 | FFCP PHASE1:Hg19::chr22:47126639..47126654,+#_5ace75054bf71479d5a1fef30ffee88b | p@chr22:47126639..47126654, + |
| 8.91e-111 | FFCP PHASE2:Hg19::chr22:47126639..47126654,+#_5ace75054bf71479d5a1fef30ffee88b | p@chr22:47126639..47126654, + |
| 2.76e-110 | FFCP PHASE1:Hg19::chr15:71228905..71228915,+#_0d9c0c5f5240b6aabfe6064862f91b93 | p17@LRRC49 |
| 2.76e-110 | FFCP PHASE1:Hg19::chr4:1233005..1233017,+#_0d9c0c5f5240b6aabfe6064862f91b93 | p@chr4:1233005..1233017, + |
| 2.76e-110 | FFCP PHASE2:Hg19::chr11:75194071..75194110,-#_0d9c0c5f5240b6aabfe6064862f91b93 | p@chr11:75194071..75194110, - |
| 2.76e-110 | FFCP PHASE1:Hg19::chr11:75194071..75194110,-#_0d9c0c5f5240b6aabfe6064862f91b93 | p@chr11:75194071..75194110, - |
| 2.76e-110 | FFCP PHASE2:Hg19::chr4:1233005..1233017,+#_0d9c0c5f5240b6aabfe6064862f91b93 | p@chr4:1233005..1233017, + |
| 2.76e-110 | FFCP PHASE2:Hg19::chr15:71228905..71228915,+#_0d9c0c5f5240b6aabfe6064862f91b93 | p17@LRRC49 |
| 5.02e-99 | FFCP PHASE1:Hg19::chr12:128210666..128210685,-#_e10f7ee5f323a23152e5a369cbcc8d74 | p@chr12:128210666..128210685, - |
| 5.02e-99 | FFCP PHASE2:Hg19::chr12:128210666..128210685,-#_e10f7ee5f323a23152e5a369cbcc8d74 | p@chr12:128210666..128210685, - |
| 1.38e-98 | FFCP PHASE1:Hg19::chr9:139095116..139095139,+#_09220a7a11d2f7f5871951de837e5d88 | p@chr9:139095116..139095139, + |
| 1.38e-98 | FFCP PHASE2:Hg19::chr9:139095116..139095139,+#_09220a7a11d2f7f5871951de837e5d88 | p@chr9:139095116..139095139, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:211830430..211830435,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr2:211830430..211830435, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chrX:33146501..33146521,-#_86c8842de92bb34e78ab840208c7dc62 | p32@DMD |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:57975398..57975401,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr1:57975398..57975401, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:17085717..17085733,-#_86c8842de92bb34e78ab840208c7dc62 | p2@PLCL2-AS1 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr16:1210506..1210513,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr16:1210506..1210513, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:133115455..133115457,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr3:133115455..133115457, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:99798419..99798422,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr1:99798419..99798422, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr9:92310419..92310432,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr9:92310419..92310432, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:135521466..135521470,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr8:135521466..135521470, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:18042584..18042593,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr11:18042584..18042593, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr19:2608406..2608413,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr19:2608406..2608413, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:22290492..22290497,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr6:22290492..22290497, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr20:44991864..44991887,-#_86c8842de92bb34e78ab840208c7dc62 | p10@SLC35C2 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr16:17930871..17930877,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr16:17930871..17930877, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:100942376..100942381,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr3:100942376..100942381, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:135473876..135473885,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr8:135473876..135473885, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:130248948..130248959,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr3:130248948..130248959, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:92310419..92310432,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr9:92310419..92310432, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:119868809..119868839,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr5:119868809..119868839, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:135521466..135521470,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr8:135521466..135521470, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:74951707..74951719,+#_86c8842de92bb34e78ab840208c7dc62 | p9@LOC100507050 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:99860786..99860791,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr1:99860786..99860791, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr16:51174216..51174239,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr16:51174216..51174239, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:135504337..135504342,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr8:135504337..135504342, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:15134610..15134617,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr12:15134610..15134617, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:18021982..18021985,+#_86c8842de92bb34e78ab840208c7dc62 | p3@MYO15A |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:22290492..22290497,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr6:22290492..22290497, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:18041206..18041211,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr11:18041206..18041211, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:89881348..89881356,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr12:89881348..89881356, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:61996393..61996421,-#_86c8842de92bb34e78ab840208c7dc62 | p4@CSHL1, p4@GH1 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:22287720..22287725,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr6:22287720..22287725, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr16:50898098..50898107,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr16:50898098..50898107, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:158737729..158737738,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr5:158737729..158737738, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr19:49519357..49519372,-#_86c8842de92bb34e78ab840208c7dc62 | p1@CU678753 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:17185958..17185998,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr2:17185958..17185998, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chrX:33146501..33146521,-#_86c8842de92bb34e78ab840208c7dc62 | p32@DMD |
| 1.55e-98 | FFCP PHASE1:Hg19::chr13:56628548..56628553,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr13:56628548..56628553, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:60826120..60826127,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr12:60826120..60826127, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:61996155..61996158,-#_86c8842de92bb34e78ab840208c7dc62 | p5@GH1 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr5:119868809..119868839,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr5:119868809..119868839, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:1188439..1188454,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr4:1188439..1188454, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:135504337..135504342,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr8:135504337..135504342, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:49621658..49621666,+#_86c8842de92bb34e78ab840208c7dc62 | p21@TUBA1C |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:107545606..107545631,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr3:107545606..107545631, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:216447404..216447411,-#_86c8842de92bb34e78ab840208c7dc62 | p1@ENST00000457625 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:108602341..108602352,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr2:108602341..108602352, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:22287720..22287725,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr6:22287720..22287725, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr5:158737729..158737738,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr5:158737729..158737738, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr18:56963093..56963105,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr18:56963093..56963105, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr11:18067951..18067954,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr11:18067951..18067954, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr13:52650486..52650491,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr13:52650486..52650491, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:61995410..61995414,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr17:61995410..61995414, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:55470964..55470974,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr15:55470964..55470974, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:6328202..6328224,-#_86c8842de92bb34e78ab840208c7dc62 | p1@BC014398 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:25391425..25391439,-#_86c8842de92bb34e78ab840208c7dc62 | p10@POMC |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:61994797..61994839,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr17:61994797..61994839, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:154042775..154042780,-#_86c8842de92bb34e78ab840208c7dc62 | p8@DHX36 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr16:18066319..18066337,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr16:18066319..18066337, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:121088121..121088131,+#_86c8842de92bb34e78ab840208c7dc62 | p11@CABP1 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:101038595..101038604,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr3:101038595..101038604, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:57907030..57907050,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr1:57907030..57907050, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr10:80984180..80984190,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr10:80984180..80984190, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:55422858..55422866,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr12:55422858..55422866, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:120842768..120842790,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr7:120842768..120842790, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr14:49512240..49512248,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr14:49512240..49512248, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr13:52650530..52650533,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr13:52650530..52650533, - |
