UBERON:0004875: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=nephrogenic cord | |name=nephrogenic cord | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000922 | |part_of=UBERON:0000922 | ||
Latest revision as of 17:49, 12 September 2014
| Name: | nephrogenic cord | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "a portion of the urogenital ridge which is the source of much of the urinary system[WP]." [Wikipedia:Nephrogenic_cord] | ||
| Xrefs: |
| ||
| Synonyms: | "chorda nephrogenica" RELATED LATIN [Wikipedia:Nephrogenic_cord] | ||
| Comments: | part_of or develops_from urogenital ridge? |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005423(developing anatomical structure) |
|---|---|
| develops_from: | UBERON:0004876(urogenital ridge) |
| part_of: | UBERON:0000922(embryo) |
Children
| part of: | UBERON:0005754 (rostral part of nephrogenic cord) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004875 (nephrogenic cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.83e-65 | FFCP PHASE2:Mm9::chr10:127470655..127470664,+#_3e74b05bcd4ae70139df9224d331bf42 | p@chr10:127470655..127470664, + |
| 2.83e-65 | FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_3e74b05bcd4ae70139df9224d331bf42 | p4@Spink12 |
| 2.83e-65 | FFCP PHASE1:Mm9::chr10:127470655..127470664,+#_3e74b05bcd4ae70139df9224d331bf42 | p@chr10:127470655..127470664, + |
| 2.83e-65 | FFCP PHASE1:Mm9::chr14:63585028..63585037,-#_3e74b05bcd4ae70139df9224d331bf42 | p@chr14:63585028..63585037, - |
| 2.83e-65 | FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_3e74b05bcd4ae70139df9224d331bf42 | p4@Spink12 |
| 2.83e-65 | FFCP PHASE1:Mm9::chr14:63665679..63665688,+#_3e74b05bcd4ae70139df9224d331bf42 | p4@Defb42 |
| 2.83e-65 | FFCP PHASE2:Mm9::chr14:63665679..63665688,+#_3e74b05bcd4ae70139df9224d331bf42 | p4@Defb42 |
| 2.83e-65 | FFCP PHASE2:Mm9::chr14:63585028..63585037,-#_3e74b05bcd4ae70139df9224d331bf42 | p@chr14:63585028..63585037, - |
| 3.99e-50 | FFCP PHASE2:Mm9::chr2:152388713..152388729,+#_c356b2c847a515521a6fe753444b3a76 | p@chr2:152388713..152388729, + |
| 3.99e-50 | FFCP PHASE1:Mm9::chr2:152388713..152388729,+#_c356b2c847a515521a6fe753444b3a76 | p@chr2:152388713..152388729, + |
| 5.6e-50 | FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_a52ba957e8ad4186f4d8110f79d26ad7 | p@chr2:120409486..120409492, + |
| 5.6e-50 | FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_a52ba957e8ad4186f4d8110f79d26ad7 | p@chr2:120409486..120409492, + |
| 1.6e-49 | FFCP PHASE2:Mm9::chr9:35597686..35597691,-#_386211f7cdcce24144f83dd84ef487d5 | p2@D730048I06Rik, p2@Gm17727 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr14:63585020..63585025,-#_386211f7cdcce24144f83dd84ef487d5 | p@chr14:63585020..63585025, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr11:105797641..105797656,-#_386211f7cdcce24144f83dd84ef487d5 | p4@Cyb561 |
| 1.6e-49 | FFCP PHASE2:Mm9::chr14:63585020..63585025,-#_386211f7cdcce24144f83dd84ef487d5 | p@chr14:63585020..63585025, - |
| 1.6e-49 | FFCP PHASE1:Mm9::chr11:105797641..105797656,-#_386211f7cdcce24144f83dd84ef487d5 | p4@Cyb561 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr14:63585048..63585062,-#_386211f7cdcce24144f83dd84ef487d5 | p@chr14:63585048..63585062, - |
| 1.6e-49 | FFCP PHASE1:Mm9::chr9:35597686..35597691,-#_386211f7cdcce24144f83dd84ef487d5 | p2@D730048I06Rik, p2@Gm17727 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr11:76361451..76361499,+#_386211f7cdcce24144f83dd84ef487d5 | p@chr11:76361451..76361499, + |
| 1.6e-49 | FFCP PHASE2:Mm9::chr14:63585048..63585062,-#_386211f7cdcce24144f83dd84ef487d5 | p@chr14:63585048..63585062, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr11:76361451..76361499,+#_386211f7cdcce24144f83dd84ef487d5 | p@chr11:76361451..76361499, + |
| 2.33e-49 | FFCP PHASE2:Mm9::chr9:26611246..26611253,-#_d9799cdb5d1792b54fa1fa8cc7d7483a | p@chr9:26611246..26611253, - |
| 2.33e-49 | FFCP PHASE2:Mm9::chr9:26732045..26732085,+#_d9799cdb5d1792b54fa1fa8cc7d7483a | p@chr9:26732045..26732085, + |
| 2.33e-49 | FFCP PHASE1:Mm9::chr14:51734043..51734054,+#_d9799cdb5d1792b54fa1fa8cc7d7483a | p2@Eddm3b |
| 2.33e-49 | FFCP PHASE2:Mm9::chr14:51734043..51734054,+#_d9799cdb5d1792b54fa1fa8cc7d7483a | p2@Eddm3b |
| 2.33e-49 | FFCP PHASE1:Mm9::chr9:26611246..26611253,-#_d9799cdb5d1792b54fa1fa8cc7d7483a | p@chr9:26611246..26611253, - |
| 2.33e-49 | FFCP PHASE2:Mm9::chr14:63627556..63627564,-#_d9799cdb5d1792b54fa1fa8cc7d7483a | p@chr14:63627556..63627564, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr14:63627556..63627564,-#_d9799cdb5d1792b54fa1fa8cc7d7483a | p@chr14:63627556..63627564, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr9:26732045..26732085,+#_d9799cdb5d1792b54fa1fa8cc7d7483a | p@chr9:26732045..26732085, + |
| 3.4e-49 | FFCP PHASE1:Mm9::chr2:69981027..69981032,+#_7e60dff3c96e89262e358066b0d5d3ca | p@chr2:69981027..69981032, + |
| 3.4e-49 | FFCP PHASE2:Mm9::chr2:69981027..69981032,+#_7e60dff3c96e89262e358066b0d5d3ca | p@chr2:69981027..69981032, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr14:68644730..68644737,+#_121e7bbcf9d5f9174346c0dd1cd0f66e | p@chr14:68644730..68644737, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_121e7bbcf9d5f9174346c0dd1cd0f66e | p10@PAX2 |
| 9.75e-45 | FFCP PHASE2:Hg19::chr1:172416185..172416189,-#_121e7bbcf9d5f9174346c0dd1cd0f66e | p@chr1:172416185..172416189, - |
| 9.75e-45 | FFCP PHASE1:Hg19::chr1:172416185..172416189,-#_121e7bbcf9d5f9174346c0dd1cd0f66e | p@chr1:172416185..172416189, - |
| 9.75e-45 | FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_121e7bbcf9d5f9174346c0dd1cd0f66e | p10@PAX2 |
| 9.75e-45 | FFCP PHASE2:Hg19::chr14:68644730..68644737,+#_121e7bbcf9d5f9174346c0dd1cd0f66e | p@chr14:68644730..68644737, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr5:31379845..31379855,+#_2c808356ccd804cd36d69a04f78b05be | p@chr5:31379845..31379855, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:167480413..167480463,-#_2c808356ccd804cd36d69a04f78b05be | p@chr2:167480413..167480463, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr7:109379339..109379349,+#_2c808356ccd804cd36d69a04f78b05be | p15@Pgap2 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21380610..21380620,-#_2c808356ccd804cd36d69a04f78b05be | p@chr13:21380610..21380620, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr16:25752183..25752203,+#_2c808356ccd804cd36d69a04f78b05be | p@chr16:25752183..25752203, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:31379972..31379981,+#_2c808356ccd804cd36d69a04f78b05be | p@chr5:31379972..31379981, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:87922962..87922982,+#_2c808356ccd804cd36d69a04f78b05be | p@chr1:87922962..87922982, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr14:69116075..69116107,-#_2c808356ccd804cd36d69a04f78b05be | p@chr14:69116075..69116107, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:148676919..148676930,-#_2c808356ccd804cd36d69a04f78b05be | p3@9230104L09Rik |
| 4.54e-44 | FFCP PHASE1:Mm9::chr11:101959159..101959163,+#_2c808356ccd804cd36d69a04f78b05be | p@chr11:101959159..101959163, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr4:123977104..123977120,-#_2c808356ccd804cd36d69a04f78b05be | p1@ENSMUST00000139012, p1@uc008uqo.1 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:51627586..51627595,+#_2c808356ccd804cd36d69a04f78b05be | p4@Rnase10 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21378296..21378303,+#_2c808356ccd804cd36d69a04f78b05be | p@chr13:21378296..21378303, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr18:44264128..44264135,+#_2c808356ccd804cd36d69a04f78b05be | p5@Spink12 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:35585507..35585517,-#_2c808356ccd804cd36d69a04f78b05be | p4@Gm17727 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:101958887..101958896,-#_2c808356ccd804cd36d69a04f78b05be | p@chr11:101958887..101958896, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:39707572..39707583,+#_2c808356ccd804cd36d69a04f78b05be | p@chr1:39707572..39707583, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr15:54678902..54678911,-#_2c808356ccd804cd36d69a04f78b05be | p@chr15:54678902..54678911, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr12:103896102..103896116,-#_2c808356ccd804cd36d69a04f78b05be | p@chr12:103896102..103896116, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr10:61976287..61976297,-#_2c808356ccd804cd36d69a04f78b05be | p@chr10:61976287..61976297, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr8:22061771..22061777,-#_2c808356ccd804cd36d69a04f78b05be | p3@Gm6040, p3@LOC100503992 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:90368977..90368987,+#_2c808356ccd804cd36d69a04f78b05be | p@chr1:90368977..90368987, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr14:63611214..63611229,+#_2c808356ccd804cd36d69a04f78b05be | p@chr14:63611214..63611229, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr3:146278590..146278595,-#_2c808356ccd804cd36d69a04f78b05be | p10@Dnase2b |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:31379377..31379384,+#_2c808356ccd804cd36d69a04f78b05be | p@chr5:31379377..31379384, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21381777..21381789,-#_2c808356ccd804cd36d69a04f78b05be | p@chr13:21381777..21381789, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chrX:12571679..12571688,-#_2c808356ccd804cd36d69a04f78b05be | p@chrX:12571679..12571688, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:20219008..20219045,+#_2c808356ccd804cd36d69a04f78b05be | p@chrX:20219008..20219045, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr7:6204391..6204398,+#_2c808356ccd804cd36d69a04f78b05be | p2@Gm6792 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:90368977..90368987,+#_2c808356ccd804cd36d69a04f78b05be | p@chr1:90368977..90368987, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:59845349..59845371,-#_2c808356ccd804cd36d69a04f78b05be | p@chr11:59845349..59845371, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:70779586..70779596,+#_2c808356ccd804cd36d69a04f78b05be | p@chr9:70779586..70779596, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr17:73221034..73221051,+#_2c808356ccd804cd36d69a04f78b05be | p@chr17:73221034..73221051, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:26730625..26730636,-#_2c808356ccd804cd36d69a04f78b05be | p3@Gm1110 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr5:110773731..110773753,+#_2c808356ccd804cd36d69a04f78b05be | p@chr5:110773731..110773753, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:152302768..152302774,+#_2c808356ccd804cd36d69a04f78b05be | p4@Defb20 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr11:116901496..116901514,-#_2c808356ccd804cd36d69a04f78b05be | p1@ENSMUST00000150628, p1@ENSMUST00000152401, p1@uc007mmw.1 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:35651788..35651804,-#_2c808356ccd804cd36d69a04f78b05be | p1@9230110F15Rik |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:26730625..26730636,-#_2c808356ccd804cd36d69a04f78b05be | p3@Gm1110 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:75559819..75559830,+#_2c808356ccd804cd36d69a04f78b05be | p@chr5:75559819..75559830, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:152302739..152302742,+#_2c808356ccd804cd36d69a04f78b05be | p5@Defb20 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr15:75347689..75347703,+#_2c808356ccd804cd36d69a04f78b05be | p@chr15:75347689..75347703, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:43367743..43367754,-#_2c808356ccd804cd36d69a04f78b05be | p@chr1:43367743..43367754, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr8:25706083..25706089,-#_2c808356ccd804cd36d69a04f78b05be | p4@Ido1 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr7:6204391..6204398,+#_2c808356ccd804cd36d69a04f78b05be | p2@Gm6792 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr18:74784728..74784738,+#_2c808356ccd804cd36d69a04f78b05be | p@chr18:74784728..74784738, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr17:35252614..35252635,-#_2c808356ccd804cd36d69a04f78b05be | p3@Ly6g5b |
| 4.54e-44 | FFCP PHASE2:Mm9::chr15:75304916..75304925,+#_2c808356ccd804cd36d69a04f78b05be | p@chr15:75304916..75304925, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:130496260..130496269,-#_2c808356ccd804cd36d69a04f78b05be | p@chrX:130496260..130496269, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:56469136..56469145,-#_2c808356ccd804cd36d69a04f78b05be | p@chr9:56469136..56469145, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:96140694..96140720,+#_2c808356ccd804cd36d69a04f78b05be | p@chr11:96140694..96140720, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21378968..21378988,-#_2c808356ccd804cd36d69a04f78b05be | p@chr13:21378968..21378988, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr8:19142604..19142612,+#_2c808356ccd804cd36d69a04f78b05be | p@chr8:19142604..19142612, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chrX:10488683..10488691,+#_2c808356ccd804cd36d69a04f78b05be | p@chrX:10488683..10488691, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:116901496..116901514,-#_2c808356ccd804cd36d69a04f78b05be | p1@ENSMUST00000150628, p1@ENSMUST00000152401, p1@uc007mmw.1 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr15:72756032..72756041,-#_2c808356ccd804cd36d69a04f78b05be | p@chr15:72756032..72756041, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:105798218..105798228,-#_2c808356ccd804cd36d69a04f78b05be | p@chr11:105798218..105798228, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:26610184..26610191,-#_2c808356ccd804cd36d69a04f78b05be | p4@Glb1l2 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr18:62816857..62816866,+#_2c808356ccd804cd36d69a04f78b05be | p7@Spink10 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:52712765..52712772,+#_2c808356ccd804cd36d69a04f78b05be | p@chr13:52712765..52712772, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chrX:75798114..75798125,-#_2c808356ccd804cd36d69a04f78b05be | p@chrX:75798114..75798125, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr18:74784728..74784738,+#_2c808356ccd804cd36d69a04f78b05be | p@chr18:74784728..74784738, + |
