UBERON:0005728: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=extraembryonic mesoderm | |name=extraembryonic mesoderm | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0016887 | |part_of=UBERON:0016887 | ||
Latest revision as of 17:54, 12 September 2014
| Name: | extraembryonic mesoderm | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "." [1] | ||
| Xrefs: |
| ||
| Synonyms: | "extra-embryonic mesoderm" EXACT [] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004120(mesoderm-derived structure),UBERON:0005292(extraembryonic tissue),UBERON:0007524(dense mesenchyme tissue) |
|---|---|
| develops_from: | UBERON:0003081(lateral plate mesoderm),UBERON:0008780(inner cell mass derived epiblast) |
| part_of: | UBERON:0016887(entire extraembryonic component) |
Children
| develops from: | UBERON:0007806 (connecting stalk) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005728 (extraembryonic mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.79e-79 | FFCP PHASE1:Hg19::chr10:120921270..120921282,-#_85b1e2f99a5ef25ddd5bf609ad2a6148 | p@chr10:120921270..120921282, - |
| 5.79e-79 | FFCP PHASE1:Hg19::chr7:135931480..135931486,+#_85b1e2f99a5ef25ddd5bf609ad2a6148 | p@chr7:135931480..135931486, + |
| 5.79e-79 | FFCP PHASE2:Hg19::chr10:120921270..120921282,-#_85b1e2f99a5ef25ddd5bf609ad2a6148 | p@chr10:120921270..120921282, - |
| 5.79e-79 | FFCP PHASE2:Hg19::chr7:135931480..135931486,+#_85b1e2f99a5ef25ddd5bf609ad2a6148 | p@chr7:135931480..135931486, + |
| 2.16e-63 | FFCP PHASE1:Hg19::chr1:205744117..205744127,-#_510c878256075d28ba0bf7cd14fe04ab | p8@RAB7L1 |
| 2.16e-63 | FFCP PHASE2:Hg19::chr1:205744117..205744127,-#_510c878256075d28ba0bf7cd14fe04ab | p8@RAB7L1 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr10:111805635..111805642,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr10:111805635..111805642, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr7:135705408..135705462,+#_f1700f6fa279d66bc6746540ac32fc48 | p@chr7:135705408..135705462, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr21:18180040..18180058,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr21:18180040..18180058, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr6:88854777..88854802,-#_f1700f6fa279d66bc6746540ac32fc48 | p16@CNR1 |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:45926373..45926388,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr3:45926373..45926388, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr19:18603318..18603327,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr19:18603318..18603327, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:148284480..148284484,+#_f1700f6fa279d66bc6746540ac32fc48 | p@chr2:148284480..148284484, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr4:167791926..167791930,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr4:167791926..167791930, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr1:168204286..168204299,+#_f1700f6fa279d66bc6746540ac32fc48 | p@chr1:168204286..168204299, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr19:53511768..53511784,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr19:53511768..53511784, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr14:76017349..76017357,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr14:76017349..76017357, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:111311854..111311862,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr3:111311854..111311862, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr10:15035430..15035449,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr10:15035430..15035449, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr10:15013428..15013456,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr10:15013428..15013456, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr1:234765062..234765067,+#_f1700f6fa279d66bc6746540ac32fc48 | p6@LINC00184 |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:195306394..195306429,-#_f1700f6fa279d66bc6746540ac32fc48 | p5@APOD |
| 1.1e-59 | FFCP PHASE1:Hg19::chr19:53510877..53510886,+#_f1700f6fa279d66bc6746540ac32fc48 | p2@uc002qao.2 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr14:76017349..76017357,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr14:76017349..76017357, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chrX:10129363..10129369,+#_f1700f6fa279d66bc6746540ac32fc48 | p@chrX:10129363..10129369, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr1:234631379..234631392,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr1:234631379..234631392, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr21:18178842..18178867,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr21:18178842..18178867, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr19:49488858..49488869,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr19:49488858..49488869, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr9:74995205..74995211,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr9:74995205..74995211, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr6:491208..491217,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr6:491208..491217, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr22:20105576..20105585,+#_f1700f6fa279d66bc6746540ac32fc48 | p11@RANBP1 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr3:45926401..45926410,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr3:45926401..45926410, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr4:167951900..167951907,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr4:167951900..167951907, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:189266272..189266296,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr3:189266272..189266296, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:45063061..45063082,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr2:45063061..45063082, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr6:149464325..149464336,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr6:149464325..149464336, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:228216610..228216617,+#_f1700f6fa279d66bc6746540ac32fc48 | p18@MFF |
| 1.1e-59 | FFCP PHASE2:Hg19::chr1:146746588..146746604,+#_f1700f6fa279d66bc6746540ac32fc48 | p5@CHD1L |
| 1.1e-59 | FFCP PHASE1:Hg19::chr3:157301317..157301362,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr3:157301317..157301362, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr4:36393818..36393829,-#_f1700f6fa279d66bc6746540ac32fc48 | p2@ENST00000504344 |
| 1.1e-59 | FFCP PHASE2:Hg19::chr19:42682291..42682301,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr19:42682291..42682301, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr7:106397647..106397655,+#_f1700f6fa279d66bc6746540ac32fc48 | p@chr7:106397647..106397655, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:148282641..148282654,+#_f1700f6fa279d66bc6746540ac32fc48 | p@chr2:148282641..148282654, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr14:76957775..76957781,+#_f1700f6fa279d66bc6746540ac32fc48 | p@chr14:76957775..76957781, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr1:212870782..212870788,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr1:212870782..212870788, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr11:129247710..129247730,+#_f1700f6fa279d66bc6746540ac32fc48 | p@chr11:129247710..129247730, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr8:38216859..38216889,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr8:38216859..38216889, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:106363986..106363994,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr7:106363986..106363994, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr20:22771722..22771733,+#_f1700f6fa279d66bc6746540ac32fc48 | p@chr20:22771722..22771733, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:15633244..15633249,+#_f1700f6fa279d66bc6746540ac32fc48 | p@chr2:15633244..15633249, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:142250880..142250889,-#_f1700f6fa279d66bc6746540ac32fc48 | p4@AF430683, p4@AF430684, p4@AF430685 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr4:167938808..167938815,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr4:167938808..167938815, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:180050773..180050786,+#_f1700f6fa279d66bc6746540ac32fc48 | p@chr3:180050773..180050786, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr21:18170731..18170736,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr21:18170731..18170736, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr11:128154946..128154955,+#_f1700f6fa279d66bc6746540ac32fc48 | p@chr11:128154946..128154955, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:228216642..228216661,+#_f1700f6fa279d66bc6746540ac32fc48 | p11@MFF |
| 1.1e-59 | FFCP PHASE1:Hg19::chr22:37484406..37484413,+#_f1700f6fa279d66bc6746540ac32fc48 | p@chr22:37484406..37484413, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr9:74986248..74986275,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr9:74986248..74986275, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr12:77198556..77198565,+#_f1700f6fa279d66bc6746540ac32fc48 | p@chr12:77198556..77198565, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr20:38442102..38442111,+#_f1700f6fa279d66bc6746540ac32fc48 | p@chr20:38442102..38442111, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr14:76957775..76957781,+#_f1700f6fa279d66bc6746540ac32fc48 | p@chr14:76957775..76957781, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:135735084..135735112,+#_f1700f6fa279d66bc6746540ac32fc48 | p@chr7:135735084..135735112, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr21:18180126..18180130,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr21:18180126..18180130, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr17:40021018..40021028,+#_f1700f6fa279d66bc6746540ac32fc48 | p@chr17:40021018..40021028, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:53245239..53245255,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr2:53245239..53245255, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr9:74997054..74997058,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr9:74997054..74997058, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr10:109197952..109197957,+#_f1700f6fa279d66bc6746540ac32fc48 | p@chr10:109197952..109197957, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr17:1985278..1985290,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr17:1985278..1985290, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:17543537..17543548,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr7:17543537..17543548, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr4:167983163..167983209,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr4:167983163..167983209, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr19:49488921..49488932,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr19:49488921..49488932, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr10:61574724..61574737,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr10:61574724..61574737, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr3:111319059..111319101,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr3:111319059..111319101, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr1:207617923..207617929,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr1:207617923..207617929, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr10:120921395..120921406,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr10:120921395..120921406, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr6:87324164..87324175,+#_f1700f6fa279d66bc6746540ac32fc48 | p@chr6:87324164..87324175, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr6:149490934..149490939,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr6:149490934..149490939, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr6:42362820..42362827,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr6:42362820..42362827, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr4:167932279..167932291,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr4:167932279..167932291, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:2930946..2930963,+#_f1700f6fa279d66bc6746540ac32fc48 | p@chr2:2930946..2930963, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:119281371..119281382,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr3:119281371..119281382, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr12:129054695..129054717,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr12:129054695..129054717, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr19:40074306..40074328,+#_f1700f6fa279d66bc6746540ac32fc48 | p@chr19:40074306..40074328, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr10:111805643..111805655,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr10:111805643..111805655, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr3:119279036..119279047,+#_f1700f6fa279d66bc6746540ac32fc48 | p@chr3:119279036..119279047, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr21:18180062..18180079,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr21:18180062..18180079, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr5:28145264..28145272,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr5:28145264..28145272, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr9:74996801..74996811,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr9:74996801..74996811, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr10:31996512..31996530,-#_f1700f6fa279d66bc6746540ac32fc48 | p5@ENST00000433770 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:106363860..106363870,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr7:106363860..106363870, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr10:30336924..30336935,-#_f1700f6fa279d66bc6746540ac32fc48 | p15@KIAA1462 |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:45926401..45926410,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr3:45926401..45926410, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr22:37484379..37484392,+#_f1700f6fa279d66bc6746540ac32fc48 | p@chr22:37484379..37484392, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:148293141..148293150,+#_f1700f6fa279d66bc6746540ac32fc48 | p@chr2:148293141..148293150, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr7:102945487..102945492,+#_f1700f6fa279d66bc6746540ac32fc48 | p@chr7:102945487..102945492, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:75655787..75655802,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr3:75655787..75655802, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr14:76017386..76017395,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr14:76017386..76017395, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr12:129054695..129054717,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr12:129054695..129054717, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:228216535..228216554,+#_f1700f6fa279d66bc6746540ac32fc48 | p14@MFF |
| 1.1e-59 | FFCP PHASE2:Hg19::chr6:138023078..138023089,-#_f1700f6fa279d66bc6746540ac32fc48 | p@chr6:138023078..138023089, - |
