FFCP PHASE2:Hg19::chr16:50715239..50715250,-: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:124460 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:30390 |TSScl...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=124460 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=30390 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=Q7Z614 | ||
|association_with_transcript=13bp_to_ENST00000300590,ENST00000413750,ENST00000423026,NM_001144972,NM_153337,NM_182854,uc002egi.3,uc002egk.2,uc010vgp.1_5end | |association_with_transcript=13bp_to_ENST00000300590,ENST00000413750,ENST00000423026,NM_001144972,NM_153337,NM_182854,uc002egi.3,uc002egk.2,uc010vgp.1_5end | ||
|cluster_id=chr16:50715239..50715250,- | |cluster_id=chr16:50715239..50715250,- | ||
Latest revision as of 21:03, 16 September 2015
| Short description: | p3@SNX20 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_3_at_SNX20_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 13bp_to_ENST00000300590, ENST00000413750, ENST00000423026, NM_001144972, NM_153337, NM_182854, uc002egi.3, uc002egk.2, uc010vgp.1_5end |
| EntrezGene: | SNX20 |
| HGNC: | 30390 |
| UniProt: | Q7Z614 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p3@SNX20 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| leukocyte | 7.73e-61 | 136 |
| hematopoietic lineage restricted progenitor cell | 7.77e-56 | 120 |
| nongranular leukocyte | 9.45e-53 | 115 |
| hematopoietic stem cell | 5.95e-51 | 168 |
| hematopoietic oligopotent progenitor cell | 1.95e-50 | 161 |
| hematopoietic multipotent progenitor cell | 1.95e-50 | 161 |
| hematopoietic cell | 2.13e-47 | 177 |
| lymphoid lineage restricted progenitor cell | 3.61e-33 | 52 |
| lymphocyte | 2.31e-32 | 53 |
| common lymphoid progenitor | 2.31e-32 | 53 |
Showing 1 to 10 of 41 entries
| Ontology term | p-value | n |
|---|---|---|
| hematopoietic system | 9.01e-32 | 98 |
| blood island | 9.01e-32 | 98 |
| hemolymphoid system | 8.94e-31 | 108 |
| immune system | 9.96e-22 | 93 |
| bone marrow | 4.70e-19 | 76 |
| bone element | 4.92e-17 | 82 |
| skeletal element | 9.02e-15 | 90 |
| connective tissue | 6.75e-13 | 371 |
| skeletal system | 1.80e-12 | 100 |
| blood | 3.43e-11 | 15 |
Showing 1 to 10 of 18 entries
