FFCP PHASE2:Hg19::chr7:5461523..5461542,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:84629 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding |HGNC=HGNC:11962 |TSSclassifier=stron...") |
No edit summary |
||
| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=84629 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | ||
|HGNC= | |HGNC=11962 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=F8W885 | ||
|association_with_transcript=-5bp_to_ENST00000415160,uc011jwh.1_5end | |association_with_transcript=-5bp_to_ENST00000415160,uc011jwh.1_5end | ||
|cluster_id=chr7:5461523..5461542,- | |cluster_id=chr7:5461523..5461542,- | ||
Latest revision as of 00:13, 19 September 2015
| Short description: | p7@TNRC18 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_7_at_TNRC18_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -5bp_to_ENST00000415160, uc011jwh.1_5end |
| EntrezGene: | TNRC18 |
| HGNC: | 11962 |
| UniProt: | F8W885 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p7@TNRC18 |
|---|
0
5
10
15
20
25
30
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| kidney cell | 1.20e-26 | 17 |
| kidney epithelial cell | 1.20e-26 | 17 |
| kidney tubule cell | 8.45e-25 | 10 |
| nephron tubule epithelial cell | 8.45e-25 | 10 |
| epithelial cell of nephron | 1.26e-22 | 15 |
| kidney cortical cell | 5.85e-16 | 12 |
| renal cortical epithelial cell | 5.85e-16 | 12 |
| hepatocyte | 3.19e-14 | 12 |
| brush border epithelial cell | 9.04e-09 | 3 |
| kidney cortex tubule cell | 9.04e-09 | 3 |
Showing 1 to 10 of 13 entries
| Ontology term | p-value | n |
|---|---|---|
| abdomen element | 3.01e-34 | 54 |
| abdominal segment element | 3.01e-34 | 54 |
| abdominal segment of trunk | 5.46e-30 | 60 |
| abdomen | 5.46e-30 | 60 |
| kidney | 5.71e-28 | 26 |
| kidney mesenchyme | 5.71e-28 | 26 |
| upper urinary tract | 5.71e-28 | 26 |
| kidney rudiment | 5.71e-28 | 26 |
| kidney field | 5.71e-28 | 26 |
| nephron tubule epithelium | 8.45e-25 | 10 |
Showing 1 to 10 of 81 entries
| Ontology term | p-value | n |
|---|---|---|
| adenocarcinoma | 5.54e-09 | 25 |
| carcinoma | 1.60e-07 | 106 |
Showing 1 to 2 of 2 entries
