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Revision as of 17:13, 15 June 2012

Name:cochlea
Definition:"The cochlea is the auditory portion of the inner ear. Its core component is the Organ of Corti, the sensory organ of hearing, which is distributed along the partition separating fluid chambers in the coiled tapered tube of the cochlea. The name is from the Latin for snail, which is from the Greek kokhlias 'snail, screw,' from kokhlos 'spiral shell,' in reference to its coiled shape; the cochlea is coiled in most mammals, monotremes being the exceptions. [WP,unvetted]." [Wikipedia:Cochlea]
Xrefs:
links:

AAO:0000253
BTO:0000267
EFO:0000357
EMAPA:17597
EV:0100363
FMA:60201
GAID:724
[ 200px-Cochlea-crosssection.png 200px-Cochlea-crosssection.png]
MA:0000240
MAT:0000144
MESH:A.09.246.631.246
MIAA:0000144
ncithesaurus:Cochlea
NIF_GrossAnatomy:birnlex_1190
NIF_GrossAnatomy:birnlex_883
OpenCyc:Mx4rvqfJmJwpEbGdrcN5Y29ycA
SCTID:181187008
TAO:0000374
VHOG:0000691
XAO:0000197

ZFA:0000374
Synonyms: "cochlear organ" RELATED [BTO:0000267]
"cochlear part of bony labyrinth" EXACT []
"lagena" EXACT SENSU [XAO:0000197]
Comments:The association with 'lagena' in frog and fish comes from HOG, although HOG is inconsistent here, associating lagena with XAO cochlea and ZFA cochlear duct. NBK53175 says: "In contrast, the ventrally located auditory chambers have undergone more extensive evolutionary modifications. The saccule and lagena are prominent auditory organs in fish but the saccule has a vestibular role in mammals and birds, and the lagena is absent in mammals. The primary au- ditory organ in mammals and birds is the cochlea, which has no known counterpart in amphibians and fish (Riley and Phillips, 2003)"
Alt_id: UBERON:FMA_60201-MA_0000240-MIAA_0000144-XAO_0000197
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000477(anatomical cluster),UBERON:0004120(mesoderm-derived structure),UBERON:0004121(ectoderm-derived structure)
part_of:UBERON:0001839(bony labyrinth)



Children

part of:CL:0002315 (supporting cell of cochlea)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001844 (cochlea), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_12d82593274af9cc5a103d94a6c956e9p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_12d82593274af9cc5a103d94a6c956e9p2@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_12d82593274af9cc5a103d94a6c956e9p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_12d82593274af9cc5a103d94a6c956e9p1@Espnl
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_12d82593274af9cc5a103d94a6c956e9p1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_12d82593274af9cc5a103d94a6c956e9p@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_12d82593274af9cc5a103d94a6c956e9p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_12d82593274af9cc5a103d94a6c956e9p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr7:109052297..109052300,-#_12d82593274af9cc5a103d94a6c956e9p2@Tomt
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_12d82593274af9cc5a103d94a6c956e9p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_12d82593274af9cc5a103d94a6c956e9p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_12d82593274af9cc5a103d94a6c956e9p10@Otof
1.87e-86FFCP PHASE2:Mm9::chr4:151505798..151505818,-#_12d82593274af9cc5a103d94a6c956e9p21@Espn
1.87e-86FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_12d82593274af9cc5a103d94a6c956e9p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_12d82593274af9cc5a103d94a6c956e9p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_12d82593274af9cc5a103d94a6c956e9p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_12d82593274af9cc5a103d94a6c956e9p10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_12d82593274af9cc5a103d94a6c956e9p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chrX:154140800..154140810,+#_12d82593274af9cc5a103d94a6c956e9p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr3:81012915..81012923,+#_12d82593274af9cc5a103d94a6c956e9p@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_12d82593274af9cc5a103d94a6c956e9p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_12d82593274af9cc5a103d94a6c956e9p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_12d82593274af9cc5a103d94a6c956e9p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_12d82593274af9cc5a103d94a6c956e9p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_12d82593274af9cc5a103d94a6c956e9p2@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_12d82593274af9cc5a103d94a6c956e9p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_12d82593274af9cc5a103d94a6c956e9p10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_12d82593274af9cc5a103d94a6c956e9p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_12d82593274af9cc5a103d94a6c956e9p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_12d82593274af9cc5a103d94a6c956e9p5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr9:42207777..42207789,-#_12d82593274af9cc5a103d94a6c956e9p7@Tecta
1.87e-86FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_12d82593274af9cc5a103d94a6c956e9p15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr3:58626291..58626298,-#_12d82593274af9cc5a103d94a6c956e9p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_12d82593274af9cc5a103d94a6c956e9p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_12d82593274af9cc5a103d94a6c956e9p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_12d82593274af9cc5a103d94a6c956e9p@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_12d82593274af9cc5a103d94a6c956e9p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_12d82593274af9cc5a103d94a6c956e9p3@Otogl
1.87e-86FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_12d82593274af9cc5a103d94a6c956e9p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_12d82593274af9cc5a103d94a6c956e9p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_12d82593274af9cc5a103d94a6c956e9p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE2:Mm9::chr11:89702580..89702593,-#_12d82593274af9cc5a103d94a6c956e9p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207777..42207789,-#_12d82593274af9cc5a103d94a6c956e9p7@Tecta
1.87e-86FFCP PHASE2:Mm9::chr2:136942131..136942142,-#_12d82593274af9cc5a103d94a6c956e9p6@Jag1
1.87e-86FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_12d82593274af9cc5a103d94a6c956e9p2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_12d82593274af9cc5a103d94a6c956e9p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_12d82593274af9cc5a103d94a6c956e9p4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_12d82593274af9cc5a103d94a6c956e9p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_12d82593274af9cc5a103d94a6c956e9p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_12d82593274af9cc5a103d94a6c956e9p7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_12d82593274af9cc5a103d94a6c956e9p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556972..115556979,+#_12d82593274af9cc5a103d94a6c956e9p3@Kncn
1.87e-86FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_12d82593274af9cc5a103d94a6c956e9p1@Tmprss7
1.87e-86FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_12d82593274af9cc5a103d94a6c956e9p6@Fam70b
1.87e-86FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_12d82593274af9cc5a103d94a6c956e9p2@Strc
1.87e-86FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_12d82593274af9cc5a103d94a6c956e9p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_12d82593274af9cc5a103d94a6c956e9p9@Ankrd24
1.87e-86FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_12d82593274af9cc5a103d94a6c956e9p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_12d82593274af9cc5a103d94a6c956e9p1@Otog
1.87e-86FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_12d82593274af9cc5a103d94a6c956e9p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_12d82593274af9cc5a103d94a6c956e9p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_12d82593274af9cc5a103d94a6c956e9p@chr11:75421384..75421397, +
1.87e-86FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_12d82593274af9cc5a103d94a6c956e9p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_12d82593274af9cc5a103d94a6c956e9p2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_12d82593274af9cc5a103d94a6c956e9p@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_12d82593274af9cc5a103d94a6c956e9p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_12d82593274af9cc5a103d94a6c956e9p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_12d82593274af9cc5a103d94a6c956e9p13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_12d82593274af9cc5a103d94a6c956e9p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_12d82593274af9cc5a103d94a6c956e9p2@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_12d82593274af9cc5a103d94a6c956e9p5@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_12d82593274af9cc5a103d94a6c956e9p6@Fam70b
1.87e-86FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_12d82593274af9cc5a103d94a6c956e9p2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_12d82593274af9cc5a103d94a6c956e9p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_12d82593274af9cc5a103d94a6c956e9p@chr1:182528388..182528403, +
1.87e-86FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_12d82593274af9cc5a103d94a6c956e9p@chr17:13983179..13983190, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207965..42207978,-#_12d82593274af9cc5a103d94a6c956e9p5@Tecta
1.87e-86FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_12d82593274af9cc5a103d94a6c956e9p@chr9:42206784..42206793, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_12d82593274af9cc5a103d94a6c956e9p2@Tectb
1.87e-86FFCP PHASE2:Mm9::chr5:21371424..21371435,-#_12d82593274af9cc5a103d94a6c956e9p2@Slc26a5
1.87e-86FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_12d82593274af9cc5a103d94a6c956e9p2@Fscn2
1.87e-86FFCP PHASE1:Mm9::chr3:35012425..35012439,+#_12d82593274af9cc5a103d94a6c956e9p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_12d82593274af9cc5a103d94a6c956e9p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_12d82593274af9cc5a103d94a6c956e9p4@BC030867
1.87e-86FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_12d82593274af9cc5a103d94a6c956e9p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843796..172843799,-#_12d82593274af9cc5a103d94a6c956e9p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_12d82593274af9cc5a103d94a6c956e9p@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_12d82593274af9cc5a103d94a6c956e9p4@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_12d82593274af9cc5a103d94a6c956e9p1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_12d82593274af9cc5a103d94a6c956e9p@chr18:66033526..66033539, -
1.87e-86FFCP PHASE1:Mm9::chr16:93971357..93971363,-#_12d82593274af9cc5a103d94a6c956e9p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr9:42206784..42206793,-#_12d82593274af9cc5a103d94a6c956e9p@chr9:42206784..42206793, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011941..67011951,+#_12d82593274af9cc5a103d94a6c956e9p3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_12d82593274af9cc5a103d94a6c956e9p@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_12d82593274af9cc5a103d94a6c956e9p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_12d82593274af9cc5a103d94a6c956e9p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_12d82593274af9cc5a103d94a6c956e9p2@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_12d82593274af9cc5a103d94a6c956e9p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE1:Mm9::chr3:154459184..154459195,+#_12d82593274af9cc5a103d94a6c956e9p@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_12d82593274af9cc5a103d94a6c956e9p@chr13:78257518..78257522, +

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