DOID:5093: Difference between revisions
From FANTOM5_SSTAR
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|id=DOID:5093
|name=thoracic cancer
|namespace=
|def="An organ system cancer located_in the thoracic cavity that develops in the different types of cells within the...") |
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|id=DOID:5093 | |id=DOID:5093 | ||
|name=thoracic cancer | |name=thoracic cancer | ||
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|def="An organ system cancer located_in the thoracic cavity that develops in the different types of cells within the lungs, as well as less common cancers of the esophagus, the trachea, or the chest wall." [url:http\://www.advocatehealth.com/cmc/body.cfm?id=203] | |def="An organ system cancer located_in the thoracic cavity that develops in the different types of cells within the lungs, as well as less common cancers of the esophagus, the trachea, or the chest wall." [url:http\://www.advocatehealth.com/cmc/body.cfm?id=203] | ||
|xref= | |xref=MSH:D013899;;NCI:C3406;;SNOMEDCT_2010_1_31:188361007;;SNOMEDCT_2010_1_31:188365003;;SNOMEDCT_2010_1_31:255058005;;UMLS_CUI:C0039981;;UMLS_CUI:C0153661 | ||
|is_a=DOID:0050686 | |is_a=DOID:0050686 | ||
|synonym="Thoracic tumor" EXACT [NCI2004_11_17:C3406];;"thorax cancer" EXACT [];;"thorax neoplasm" EXACT [CSP2005:2005-5041];;"tumor of thorax (disorder)" EXACT [SNOMEDCT_2005_07_31:255058005] | |synonym="Thoracic tumor" EXACT [NCI2004_11_17:C3406];;"thorax cancer" EXACT [];;"thorax neoplasm" EXACT [CSP2005:2005-5041];;"tumor of thorax (disorder)" EXACT [SNOMEDCT_2005_07_31:255058005] | ||
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|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo | |||
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Revision as of 14:01, 11 June 2012
| Name: | thoracic cancer | ||
|---|---|---|---|
| Namespace: | disease_ontology | ||
| Definition: | "An organ system cancer located_in the thoracic cavity that develops in the different types of cells within the lungs, as well as less common cancers of the esophagus, the trachea, or the chest wall." [url:http\://www.advocatehealth.com/cmc/body.cfm?id=203] | ||
| Xrefs: |
| ||
| Synonyms: |
"Thoracic tumor" EXACT [NCI2004_11_17:C3406] "thorax cancer" EXACT [] "thorax neoplasm" EXACT [CSP2005:2005-5041] "tumor of thorax (disorder)" EXACT [SNOMEDCT_2005_07_31:255058005] | ||
| Alt_id: | DOID:3937 |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | DOID:0050686(organ system cancer) |
|---|
Children
| is a: | DOID:1612 (breast cancer) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10419-106C5 (breast carcinoma cell line:MDA-MB-453)
- 10482-107A5 (breast carcinoma cell line:MCF7)
- 10779-110G5
- 13031-139E7 (MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep1)
- 13032-139E8 (MCF7 breast cancer cell line response to EGF1)
- 13033-139E9 (MCF7 breast cancer cell line response to EGF1)
- 13034-139F1 (MCF7 breast cancer cell line response to EGF1)
- 13035-139F2 (MCF7 breast cancer cell line response to EGF1)
- 13036-139F3 (MCF7 breast cancer cell line response to EGF1)
- 13037-139F4 (MCF7 breast cancer cell line response to EGF1)
... further results Mouse (Mus musculus)
- 10419-106C5 (breast carcinoma cell line:MDA-MB-453)
- 10482-107A5 (breast carcinoma cell line:MCF7)
- 10779-110G5
- 13031-139E7 (MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep1)
- 13032-139E8 (MCF7 breast cancer cell line response to EGF1)
- 13033-139E9 (MCF7 breast cancer cell line response to EGF1)
- 13034-139F1 (MCF7 breast cancer cell line response to EGF1)
- 13035-139F2 (MCF7 breast cancer cell line response to EGF1)
- 13036-139F3 (MCF7 breast cancer cell line response to EGF1)
- 13037-139F4 (MCF7 breast cancer cell line response to EGF1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:5093 (thoracic cancer), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.57e-195 | FFCP PHASE1:Hg19::chr17:74574500..74574512,-#_a853b8332f247b97ab1552d998ffa231 | p@chr17:74574500..74574512, - |
| 2.57e-195 | FFCP PHASE2:Hg19::chr17:74574500..74574512,-#_a853b8332f247b97ab1552d998ffa231 | p@chr17:74574500..74574512, - |
| 6.94e-147 | FFCP PHASE2:Hg19::chr17:38843592..38843605,+#_0c2d2c29324a9848a9c7a1967ace98ef | p@chr17:38843592..38843605, + |
| 6.94e-147 | FFCP PHASE2:Hg19::chr10:19498507..19498511,+#_0c2d2c29324a9848a9c7a1967ace98ef | p@chr10:19498507..19498511, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr10:9012128..9012139,+#_0c2d2c29324a9848a9c7a1967ace98ef | p2@ENST00000456526 |
| 6.94e-147 | FFCP PHASE2:Hg19::chr10:8910201..8910211,+#_0c2d2c29324a9848a9c7a1967ace98ef | p@chr10:8910201..8910211, + |
| 6.94e-147 | FFCP PHASE2:Hg19::chr21:41711178..41711186,-#_0c2d2c29324a9848a9c7a1967ace98ef | p@chr21:41711178..41711186, - |
| 6.94e-147 | FFCP PHASE1:Hg19::chr21:41755185..41755210,+#_0c2d2c29324a9848a9c7a1967ace98ef | p1@DSCAM-AS1 |
| 6.94e-147 | FFCP PHASE1:Hg19::chr10:8904309..8904317,+#_0c2d2c29324a9848a9c7a1967ace98ef | p@chr10:8904309..8904317, + |
| 6.94e-147 | FFCP PHASE2:Hg19::chr10:19498541..19498551,+#_0c2d2c29324a9848a9c7a1967ace98ef | p@chr10:19498541..19498551, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr9:83986187..83986191,-#_0c2d2c29324a9848a9c7a1967ace98ef | p@chr9:83986187..83986191, - |
| 6.94e-147 | FFCP PHASE2:Hg19::chr10:9012087..9012100,+#_0c2d2c29324a9848a9c7a1967ace98ef | p1@ENST00000456526 |
| 6.94e-147 | FFCP PHASE2:Hg19::chr21:41755024..41755027,+#_0c2d2c29324a9848a9c7a1967ace98ef | p2@DSCAM-AS1 |
| 6.94e-147 | FFCP PHASE1:Hg19::chr10:19498507..19498511,+#_0c2d2c29324a9848a9c7a1967ace98ef | p@chr10:19498507..19498511, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr21:41756567..41756583,-#_0c2d2c29324a9848a9c7a1967ace98ef | p@chr21:41756567..41756583, - |
| 6.94e-147 | FFCP PHASE1:Hg19::chr11:85539944..85539950,+#_0c2d2c29324a9848a9c7a1967ace98ef | p@chr11:85539944..85539950, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr10:8910201..8910211,+#_0c2d2c29324a9848a9c7a1967ace98ef | p@chr10:8910201..8910211, + |
| 6.94e-147 | FFCP PHASE2:Hg19::chr11:85539944..85539950,+#_0c2d2c29324a9848a9c7a1967ace98ef | p@chr11:85539944..85539950, + |
| 6.94e-147 | FFCP PHASE2:Hg19::chr10:19498568..19498573,+#_0c2d2c29324a9848a9c7a1967ace98ef | p@chr10:19498568..19498573, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr12:3324464..3324485,+#_0c2d2c29324a9848a9c7a1967ace98ef | p4@TSPAN9 |
| 6.94e-147 | FFCP PHASE2:Hg19::chr21:41755185..41755210,+#_0c2d2c29324a9848a9c7a1967ace98ef | p1@DSCAM-AS1 |
| 6.94e-147 | FFCP PHASE1:Hg19::chr10:19498541..19498551,+#_0c2d2c29324a9848a9c7a1967ace98ef | p@chr10:19498541..19498551, + |
| 6.94e-147 | FFCP PHASE2:Hg19::chr12:3324464..3324485,+#_0c2d2c29324a9848a9c7a1967ace98ef | p4@TSPAN9 |
| 6.94e-147 | FFCP PHASE2:Hg19::chr10:19498407..19498415,+#_0c2d2c29324a9848a9c7a1967ace98ef | p@chr10:19498407..19498415, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr10:9012087..9012100,+#_0c2d2c29324a9848a9c7a1967ace98ef | p1@ENST00000456526 |
| 6.94e-147 | FFCP PHASE2:Hg19::chr9:83986187..83986191,-#_0c2d2c29324a9848a9c7a1967ace98ef | p@chr9:83986187..83986191, - |
| 6.94e-147 | FFCP PHASE1:Hg19::chr21:41711178..41711186,-#_0c2d2c29324a9848a9c7a1967ace98ef | p@chr21:41711178..41711186, - |
| 6.94e-147 | FFCP PHASE1:Hg19::chr17:38843592..38843605,+#_0c2d2c29324a9848a9c7a1967ace98ef | p@chr17:38843592..38843605, + |
| 6.94e-147 | FFCP PHASE2:Hg19::chr10:9012128..9012139,+#_0c2d2c29324a9848a9c7a1967ace98ef | p2@ENST00000456526 |
| 6.94e-147 | FFCP PHASE2:Hg19::chr21:41756567..41756583,-#_0c2d2c29324a9848a9c7a1967ace98ef | p@chr21:41756567..41756583, - |
| 6.94e-147 | FFCP PHASE1:Hg19::chr10:19498568..19498573,+#_0c2d2c29324a9848a9c7a1967ace98ef | p@chr10:19498568..19498573, + |
| 6.94e-147 | FFCP PHASE2:Hg19::chr10:8904309..8904317,+#_0c2d2c29324a9848a9c7a1967ace98ef | p@chr10:8904309..8904317, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr10:19498407..19498415,+#_0c2d2c29324a9848a9c7a1967ace98ef | p@chr10:19498407..19498415, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr21:41755024..41755027,+#_0c2d2c29324a9848a9c7a1967ace98ef | p2@DSCAM-AS1 |
| 2.79e-131 | FFCP PHASE1:Hg19::chr3:129226514..129226531,+#_be22c2acd301ffcf8179c112ee23acd0 | p@chr3:129226514..129226531, + |
| 2.79e-131 | FFCP PHASE2:Hg19::chr3:129226514..129226531,+#_be22c2acd301ffcf8179c112ee23acd0 | p@chr3:129226514..129226531, + |
| 8.91e-111 | FFCP PHASE1:Hg19::chr20:52482691..52482707,-#_3c45b9d4ff2197f6d3c0551fc42aabe4 | p@chr20:52482691..52482707, - |
| 8.91e-111 | FFCP PHASE1:Hg19::chr17:59469536..59469541,+#_3c45b9d4ff2197f6d3c0551fc42aabe4 | p@chr17:59469536..59469541, + |
| 8.91e-111 | FFCP PHASE2:Hg19::chr13:23733194..23733206,+#_3c45b9d4ff2197f6d3c0551fc42aabe4 | p@chr13:23733194..23733206, + |
| 8.91e-111 | FFCP PHASE1:Hg19::chr13:23733194..23733206,+#_3c45b9d4ff2197f6d3c0551fc42aabe4 | p@chr13:23733194..23733206, + |
| 8.91e-111 | FFCP PHASE2:Hg19::chr20:52482691..52482707,-#_3c45b9d4ff2197f6d3c0551fc42aabe4 | p@chr20:52482691..52482707, - |
| 8.91e-111 | FFCP PHASE2:Hg19::chr17:59469536..59469541,+#_3c45b9d4ff2197f6d3c0551fc42aabe4 | p@chr17:59469536..59469541, + |
| 1.3e-110 | FFCP PHASE2:Hg19::chr5:177505250..177505293,-#_9937851b82412d06e11f84a9637f4db4 | p@chr5:177505250..177505293, - |
| 1.3e-110 | FFCP PHASE1:Hg19::chr5:177505250..177505293,-#_9937851b82412d06e11f84a9637f4db4 | p@chr5:177505250..177505293, - |
| 3.03e-99 | FFCP PHASE2:Hg19::chr3:129226494..129226510,+#_cd591c67a774946fce8040e1fcc19d37 | p@chr3:129226494..129226510, + |
| 3.03e-99 | FFCP PHASE1:Hg19::chr3:129226494..129226510,+#_cd591c67a774946fce8040e1fcc19d37 | p@chr3:129226494..129226510, + |
| 5.02e-99 | FFCP PHASE1:Hg19::chr14:38064198..38064200,-#_f8be0a99a6db70240ef522cd0622405c | p11@FOXA1 |
| 5.02e-99 | FFCP PHASE2:Hg19::chr14:38064198..38064200,-#_f8be0a99a6db70240ef522cd0622405c | p11@FOXA1 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr13:23583578..23583586,+#_5a090d3970965866baf44bef256f598c | p@chr13:23583578..23583586, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:96504230..96504238,-#_5a090d3970965866baf44bef256f598c | p@chr1:96504230..96504238, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:19498455..19498482,+#_5a090d3970965866baf44bef256f598c | p@chr10:19498455..19498482, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr13:23583578..23583586,+#_5a090d3970965866baf44bef256f598c | p@chr13:23583578..23583586, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:65990543..65990553,-#_5a090d3970965866baf44bef256f598c | p@chr17:65990543..65990553, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr19:15674459..15674486,+#_5a090d3970965866baf44bef256f598c | p@chr19:15674459..15674486, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:96504230..96504238,-#_5a090d3970965866baf44bef256f598c | p@chr1:96504230..96504238, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr10:9012105..9012111,+#_5a090d3970965866baf44bef256f598c | p3@ENST00000456526 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr19:15674459..15674486,+#_5a090d3970965866baf44bef256f598c | p@chr19:15674459..15674486, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr10:19498455..19498482,+#_5a090d3970965866baf44bef256f598c | p@chr10:19498455..19498482, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:65990543..65990553,-#_5a090d3970965866baf44bef256f598c | p@chr17:65990543..65990553, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:9012105..9012111,+#_5a090d3970965866baf44bef256f598c | p3@ENST00000456526 |
| 4.23e-89 | FFCP PHASE1:Hg19::chr8:91871545..91871568,-#_1ab38526773238e1fa161d255c898fc5 | p3@ENST00000517884 |
| 4.23e-89 | FFCP PHASE2:Hg19::chr8:91871545..91871568,-#_1ab38526773238e1fa161d255c898fc5 | p3@ENST00000517884 |
| 7.73e-89 | FFCP PHASE2:Hg19::chr3:161089631..161089635,+#_172d349475872cd4c235ebe7353c3a1e | p@chr3:161089631..161089635, + |
| 7.73e-89 | FFCP PHASE1:Hg19::chr3:161089631..161089635,+#_172d349475872cd4c235ebe7353c3a1e | p@chr3:161089631..161089635, + |
| 1.46e-88 | FFCP PHASE2:Hg19::chr10:8091813..8091823,+#_b1c68c6bb8a602ecb7d94433d8f59e7c | p@chr10:8091813..8091823, + |
| 1.46e-88 | FFCP PHASE1:Hg19::chr10:8091813..8091823,+#_b1c68c6bb8a602ecb7d94433d8f59e7c | p@chr10:8091813..8091823, + |
| 2.57e-88 | FFCP PHASE2:Hg19::chr15:88119982..88120003,+#_4bdf5f59ffa8c33c8f722ede1c36e942 | p2@LINC00052 |
| 2.57e-88 | FFCP PHASE1:Hg19::chr15:88119982..88120003,+#_4bdf5f59ffa8c33c8f722ede1c36e942 | p2@LINC00052 |
| 5.61e-88 | FFCP PHASE1:Hg19::chr1:6488281..6488301,+#_3a6345ad1d9640e656319e6295fac5a4 | p@chr1:6488281..6488301, + |
| 5.61e-88 | FFCP PHASE2:Hg19::chr1:6488281..6488301,+#_3a6345ad1d9640e656319e6295fac5a4 | p@chr1:6488281..6488301, + |
| 1.74e-79 | FFCP PHASE2:Hg19::chr8:95653861..95653872,+#_d73b77484e1ac8ac46a14bec39380141 | p10@ESRP1 |
| 1.74e-79 | FFCP PHASE1:Hg19::chr8:95653861..95653872,+#_d73b77484e1ac8ac46a14bec39380141 | p10@ESRP1 |
| 1.21e-74 | FFCP PHASE2:Hg19::chr16:78085184..78085211,+#_ea10f6afebaa895acec78d498b3a2fe7 | p@chr16:78085184..78085211, + |
| 1.21e-74 | FFCP PHASE1:Hg19::chr16:78085184..78085211,+#_ea10f6afebaa895acec78d498b3a2fe7 | p@chr16:78085184..78085211, + |
| 1.21e-74 | FFCP PHASE1:Hg19::chr12:53359307..53359335,+#_ea10f6afebaa895acec78d498b3a2fe7 | p@chr12:53359307..53359335, + |
| 1.21e-74 | FFCP PHASE2:Hg19::chr12:53359307..53359335,+#_ea10f6afebaa895acec78d498b3a2fe7 | p@chr12:53359307..53359335, + |
| 1.56e-74 | FFCP PHASE1:Hg19::chr1:150953891..150953894,+#_6d32afba09e07c6385e4e8ecb183311f | p@chr1:150953891..150953894, + |
| 1.56e-74 | FFCP PHASE2:Hg19::chr1:150953891..150953894,+#_6d32afba09e07c6385e4e8ecb183311f | p@chr1:150953891..150953894, + |
| 2.58e-74 | FFCP PHASE1:Hg19::chr9:137258939..137258945,+#_13d72f4d508867feefdc4db123698f65 | p@chr9:137258939..137258945, + |
| 2.58e-74 | FFCP PHASE2:Hg19::chr14:100485738..100485745,+#_13d72f4d508867feefdc4db123698f65 | p37@EVL |
| 2.58e-74 | FFCP PHASE2:Hg19::chr11:61280885..61280904,-#_13d72f4d508867feefdc4db123698f65 | p@chr11:61280885..61280904, - |
| 2.58e-74 | FFCP PHASE1:Hg19::chr14:100485738..100485745,+#_13d72f4d508867feefdc4db123698f65 | p37@EVL |
| 2.58e-74 | FFCP PHASE2:Hg19::chr9:137258939..137258945,+#_13d72f4d508867feefdc4db123698f65 | p@chr9:137258939..137258945, + |
| 2.58e-74 | FFCP PHASE1:Hg19::chr11:61280885..61280904,-#_13d72f4d508867feefdc4db123698f65 | p@chr11:61280885..61280904, - |
| 7.4e-73 | FFCP PHASE1:Hg19::chr14:38065203..38065215,-#_22283f2d0481dae1d809aa6cef6f1620 | p9@FOXA1 |
| 7.4e-73 | FFCP PHASE2:Hg19::chr14:38065203..38065215,-#_22283f2d0481dae1d809aa6cef6f1620 | p9@FOXA1 |
| 3.22e-72 | FFCP PHASE2:Hg19::chr20:49241036..49241049,-#_aca235e6285e081137059acc8240cb45 | p@chr20:49241036..49241049, - |
| 3.22e-72 | FFCP PHASE1:Hg19::chr20:49241036..49241049,-#_aca235e6285e081137059acc8240cb45 | p@chr20:49241036..49241049, - |
| 4.11e-67 | FFCP PHASE2:Hg19::chr14:105267423..105267443,+#_3d9172a18a33531674c4379c922bb4ab | p2@ZBTB42 |
| 4.11e-67 | FFCP PHASE1:Hg19::chr14:105267423..105267443,+#_3d9172a18a33531674c4379c922bb4ab | p2@ZBTB42 |
| 9.57e-67 | FFCP PHASE2:Hg19::chr10:8096323..8096329,-#_7421b34e04c8dc3e4ec765259495b9a3 | p@chr10:8096323..8096329, - |
| 9.57e-67 | FFCP PHASE1:Hg19::chr10:8096323..8096329,-#_7421b34e04c8dc3e4ec765259495b9a3 | p@chr10:8096323..8096329, - |
| 2.4e-66 | FFCP PHASE2:Hg19::chr7:80551671..80551680,-#_8d42a480445c8bb597ef30fbdd0b4a1f | p38@SEMA3C |
| 2.4e-66 | FFCP PHASE1:Hg19::chr10:118030368..118030379,+#_8d42a480445c8bb597ef30fbdd0b4a1f | p@chr10:118030368..118030379, + |
| 2.4e-66 | FFCP PHASE1:Hg19::chr9:140506839..140506847,+#_8d42a480445c8bb597ef30fbdd0b4a1f | p9@ARRDC1 |
| 2.4e-66 | FFCP PHASE1:Hg19::chr10:9238697..9238718,-#_8d42a480445c8bb597ef30fbdd0b4a1f | p@chr10:9238697..9238718, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr20:49347538..49347547,-#_8d42a480445c8bb597ef30fbdd0b4a1f | p@chr20:49347538..49347547, - |
| 2.4e-66 | FFCP PHASE2:Hg19::chr9:140506839..140506847,+#_8d42a480445c8bb597ef30fbdd0b4a1f | p9@ARRDC1 |
| 2.4e-66 | FFCP PHASE2:Hg19::chr10:109305043..109305046,+#_8d42a480445c8bb597ef30fbdd0b4a1f | p@chr10:109305043..109305046, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr10:118030368..118030379,+#_8d42a480445c8bb597ef30fbdd0b4a1f | p@chr10:118030368..118030379, + |
