UBERON:0002120: Difference between revisions
From FANTOM5_SSTAR
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|id=UBERON:0002120
|name=pronephros
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|def="In mammals, the pronephros is the first of the three embryonic kidneys to be established and exists only tra...") |
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|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
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Revision as of 17:15, 15 June 2012
| Name: | pronephros | ||
|---|---|---|---|
| Definition: | "In mammals, the pronephros is the first of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the pronephros is the fully functional embryonic kidney and is indispensible for larval life[GO]." [GO:0048793, Wikipedia:Pronephros] | ||
| Xrefs: |
| ||
| Synonyms: |
"archinephron" RELATED [BTO:0001541] "embryonic kidney" RELATED [BTO:0001541] "pronephric kidney" EXACT [XAO:0002000] "pronephron" RELATED [BTO:0001541] | ||
| Comments: | Once the more complex mesonephros forms the pronephros undergoes apoptosis in amphibians. In fishes the nephron degenerates but the organ remains and becomes a component of the immune system[Wikipedia:Pronephros]. // TODO - check developmental relationships. Note that we previously include the ZFA/XAO terms under the more specific 'pronephric kidney', but these are now merged. TODO GCI: relationship: capable_of GO:0030104 | ||
| Alt_id: |
UBERON:0005794 UBERON:FMA_72170-MIAA_0000117-XAO_0002000-ZFA_0000151 | ||
| Subset: |
organ_slim uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002113(kidney),UBERON:0005423(developing anatomical structure) |
|---|---|
| develops_from: | UBERON:0005095(kidney rudiment),UBERON:0005721(pronephric mesoderm),UBERON:0005754(rostral part of nephrogenic cord) |
| part_of: | UBERON:0003887(intraembryonic coelom) |
Children
| develops from: | UBERON:0000080 (mesonephros) |
|---|---|
| part of: | UBERON:0003060 (pronephric duct) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002120 (pronephros), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.83e-65 | FFCP PHASE2:Mm9::chr14:63665679..63665688,+#_dfc3d7f2f7d40a4190c9d022e331fe17 | p4@Defb42 |
| 2.83e-65 | FFCP PHASE2:Mm9::chr14:63585028..63585037,-#_dfc3d7f2f7d40a4190c9d022e331fe17 | p@chr14:63585028..63585037, - |
| 2.83e-65 | FFCP PHASE2:Mm9::chr10:127470655..127470664,+#_dfc3d7f2f7d40a4190c9d022e331fe17 | p@chr10:127470655..127470664, + |
| 2.83e-65 | FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_dfc3d7f2f7d40a4190c9d022e331fe17 | p4@Spink12 |
| 2.83e-65 | FFCP PHASE1:Mm9::chr10:127470655..127470664,+#_dfc3d7f2f7d40a4190c9d022e331fe17 | p@chr10:127470655..127470664, + |
| 2.83e-65 | FFCP PHASE1:Mm9::chr14:63585028..63585037,-#_dfc3d7f2f7d40a4190c9d022e331fe17 | p@chr14:63585028..63585037, - |
| 2.83e-65 | FFCP PHASE1:Mm9::chr14:63665679..63665688,+#_dfc3d7f2f7d40a4190c9d022e331fe17 | p4@Defb42 |
| 2.83e-65 | FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_dfc3d7f2f7d40a4190c9d022e331fe17 | p4@Spink12 |
| 3.99e-50 | FFCP PHASE2:Mm9::chr2:152388713..152388729,+#_af7b1b4569a348edf7a14b3894a630b9 | p@chr2:152388713..152388729, + |
| 3.99e-50 | FFCP PHASE1:Mm9::chr2:152388713..152388729,+#_af7b1b4569a348edf7a14b3894a630b9 | p@chr2:152388713..152388729, + |
| 5.6e-50 | FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_e8dbb8ce83e3899a975c53ac0cdc786a | p@chr2:120409486..120409492, + |
| 5.6e-50 | FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_e8dbb8ce83e3899a975c53ac0cdc786a | p@chr2:120409486..120409492, + |
| 1.6e-49 | FFCP PHASE2:Mm9::chr14:63585020..63585025,-#_322454c4f87acb7a8bb5c7fee7d231dd | p@chr14:63585020..63585025, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr11:76361451..76361499,+#_322454c4f87acb7a8bb5c7fee7d231dd | p@chr11:76361451..76361499, + |
| 1.6e-49 | FFCP PHASE1:Mm9::chr14:63585020..63585025,-#_322454c4f87acb7a8bb5c7fee7d231dd | p@chr14:63585020..63585025, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr14:63585048..63585062,-#_322454c4f87acb7a8bb5c7fee7d231dd | p@chr14:63585048..63585062, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr9:35597686..35597691,-#_322454c4f87acb7a8bb5c7fee7d231dd | p2@D730048I06Rik, p2@Gm17727 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr11:105797641..105797656,-#_322454c4f87acb7a8bb5c7fee7d231dd | p4@Cyb561 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr9:35597686..35597691,-#_322454c4f87acb7a8bb5c7fee7d231dd | p2@D730048I06Rik, p2@Gm17727 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr14:63585048..63585062,-#_322454c4f87acb7a8bb5c7fee7d231dd | p@chr14:63585048..63585062, - |
| 1.6e-49 | FFCP PHASE1:Mm9::chr11:76361451..76361499,+#_322454c4f87acb7a8bb5c7fee7d231dd | p@chr11:76361451..76361499, + |
| 1.6e-49 | FFCP PHASE2:Mm9::chr11:105797641..105797656,-#_322454c4f87acb7a8bb5c7fee7d231dd | p4@Cyb561 |
| 2.33e-49 | FFCP PHASE1:Mm9::chr9:26732045..26732085,+#_9b36385b482b36b725c8708169c94498 | p@chr9:26732045..26732085, + |
| 2.33e-49 | FFCP PHASE2:Mm9::chr14:63627556..63627564,-#_9b36385b482b36b725c8708169c94498 | p@chr14:63627556..63627564, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr14:51734043..51734054,+#_9b36385b482b36b725c8708169c94498 | p2@Eddm3b |
| 2.33e-49 | FFCP PHASE2:Mm9::chr14:51734043..51734054,+#_9b36385b482b36b725c8708169c94498 | p2@Eddm3b |
| 2.33e-49 | FFCP PHASE2:Mm9::chr9:26611246..26611253,-#_9b36385b482b36b725c8708169c94498 | p@chr9:26611246..26611253, - |
| 2.33e-49 | FFCP PHASE2:Mm9::chr9:26732045..26732085,+#_9b36385b482b36b725c8708169c94498 | p@chr9:26732045..26732085, + |
| 2.33e-49 | FFCP PHASE1:Mm9::chr9:26611246..26611253,-#_9b36385b482b36b725c8708169c94498 | p@chr9:26611246..26611253, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr14:63627556..63627564,-#_9b36385b482b36b725c8708169c94498 | p@chr14:63627556..63627564, - |
| 3.4e-49 | FFCP PHASE2:Mm9::chr2:69981027..69981032,+#_273d5d205d9097d342700cc2315da66f | p@chr2:69981027..69981032, + |
| 3.4e-49 | FFCP PHASE1:Mm9::chr2:69981027..69981032,+#_273d5d205d9097d342700cc2315da66f | p@chr2:69981027..69981032, + |
| 9.75e-45 | FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_b3a253cd914072d2cfaeec44686052b5 | p10@PAX2 |
| 9.75e-45 | FFCP PHASE2:Hg19::chr14:68644730..68644737,+#_b3a253cd914072d2cfaeec44686052b5 | p@chr14:68644730..68644737, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr14:68644730..68644737,+#_b3a253cd914072d2cfaeec44686052b5 | p@chr14:68644730..68644737, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_b3a253cd914072d2cfaeec44686052b5 | p10@PAX2 |
| 9.75e-45 | FFCP PHASE2:Hg19::chr1:172416185..172416189,-#_b3a253cd914072d2cfaeec44686052b5 | p@chr1:172416185..172416189, - |
| 9.75e-45 | FFCP PHASE1:Hg19::chr1:172416185..172416189,-#_b3a253cd914072d2cfaeec44686052b5 | p@chr1:172416185..172416189, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chrX:156776465..156776473,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chrX:156776465..156776473, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:35651650..35651673,-#_e3a90d78abdf29a422505aa2b2f1e632 | p4@9230110F15Rik |
| 4.54e-44 | FFCP PHASE1:Mm9::chr15:54678983..54678995,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr15:54678983..54678995, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr11:20817297..20817313,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr11:20817297..20817313, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:110773718..110773729,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr5:110773718..110773729, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr15:75329148..75329155,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr15:75329148..75329155, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr8:22061721..22061728,-#_e3a90d78abdf29a422505aa2b2f1e632 | p2@Gm6040, p2@LOC100503992 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:26688157..26688159,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr9:26688157..26688159, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:25678985..25679033,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr2:25678985..25679033, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr10:52101299..52101305,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr10:52101299..52101305, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:87922962..87922982,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr1:87922962..87922982, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr14:51670340..51670346,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr14:51670340..51670346, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:90155722..90155743,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr1:90155722..90155743, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21378927..21378932,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr13:21378927..21378932, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr12:16663110..16663116,+#_e3a90d78abdf29a422505aa2b2f1e632 | p3@Ntsr2 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:164434157..164434162,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr2:164434157..164434162, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr10:28772042..28772046,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr10:28772042..28772046, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:52712744..52712754,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr13:52712744..52712754, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr12:114385720..114385732,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr12:114385720..114385732, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:17224952..17224968,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr11:17224952..17224968, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr4:138824620..138824627,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr4:138824620..138824627, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr12:110131571..110131579,-#_e3a90d78abdf29a422505aa2b2f1e632 | p15@Wars |
| 4.54e-44 | FFCP PHASE2:Mm9::chr8:25706249..25706254,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr8:25706249..25706254, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21379430..21379437,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr13:21379430..21379437, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:103276578..103276585,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chrX:103276578..103276585, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr15:54678902..54678911,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr15:54678902..54678911, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr7:151928014..151928021,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr7:151928014..151928021, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:36016859..36016897,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr1:36016859..36016897, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr16:23308182..23308185,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr16:23308182..23308185, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr8:19141471..19141518,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr8:19141471..19141518, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr5:31379437..31379448,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr5:31379437..31379448, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:77645280..77645295,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr5:77645280..77645295, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr14:51627586..51627595,+#_e3a90d78abdf29a422505aa2b2f1e632 | p4@Rnase10 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr3:65253465..65253475,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr3:65253465..65253475, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:52542831..52542836,-#_e3a90d78abdf29a422505aa2b2f1e632 | p4@Rnase13 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:89597818..89597827,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr1:89597818..89597827, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:98567868..98567884,-#_e3a90d78abdf29a422505aa2b2f1e632 | p5@Med24 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:31379477..31379481,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr5:31379477..31379481, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr17:24865194..24865204,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr17:24865194..24865204, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21385729..21385768,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr13:21385729..21385768, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:50280126..50280140,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chrX:50280126..50280140, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:116901629..116901639,-#_e3a90d78abdf29a422505aa2b2f1e632 | p3@uc007mmw.1 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr16:22504758..22504766,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr16:22504758..22504766, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr11:101958844..101958851,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr11:101958844..101958851, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr16:22547027..22547063,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr16:22547027..22547063, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21379306..21379315,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr13:21379306..21379315, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chrX:75798157..75798162,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chrX:75798157..75798162, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chrX:130496372..130496393,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chrX:130496372..130496393, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr6:18338054..18338077,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr6:18338054..18338077, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:152302836..152302841,+#_e3a90d78abdf29a422505aa2b2f1e632 | p6@Defb20 |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:130496372..130496393,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chrX:130496372..130496393, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:96150839..96150842,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr11:96150839..96150842, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:35930706..35930717,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr5:35930706..35930717, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:51680551..51680555,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr14:51680551..51680555, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21379107..21379136,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr13:21379107..21379136, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr10:56515486..56515496,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr10:56515486..56515496, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:36016859..36016897,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr1:36016859..36016897, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:101958855..101958871,-#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr11:101958855..101958871, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:152302813..152302821,+#_e3a90d78abdf29a422505aa2b2f1e632 | p3@Defb20 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr8:25706249..25706254,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr8:25706249..25706254, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:90155923..90155932,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr1:90155923..90155932, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr8:23045782..23045791,+#_e3a90d78abdf29a422505aa2b2f1e632 | p@chr8:23045782..23045791, + |
