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Revision as of 17:19, 15 June 2012

Name:optic vesicle
Definition:"The optic vesicle is the evagination of neurectoderm that precedes formation of the optic cup[GO]. Portion of tissue that is comprised of neuroepitheium which has pinched off from the anterior neural keel and will form the optic cup[ZFA]." [GO:0003404, Wikipedia:Optic_vesicles]
Xrefs:
links:

AAO:0011039
EHDAA2:0001320
EMAPA:16540
[ 200px-Gray863.png 200px-Gray863.png]
ncithesaurus:Optic_Vesicle
SCTID:362864008
VHOG:0000165
XAO:0000228

ZFA:0000050
Synonyms: "evagination" RELATED []
Comments:Genes: Six3, Pax6, Rx1 are expressed together in the tip of the neural plate [ISBN:9780878932504 "Developmental Biology"]
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000479(tissue),UBERON:0004121(ectoderm-derived structure)
develops_from:UBERON:0003071(eye primordium)



Children

develops from:UBERON:0001769 (iris),UBERON:0003072 (optic cup)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004128 (optic vesicle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.31e-86FFCP PHASE2:Mm9::chr10:67364011..67364018,-#_081e6863227a6e39750b1a0122c57c6fp5@Zfp365
1.31e-86FFCP PHASE1:Mm9::chr17:31817987..31818013,+#_081e6863227a6e39750b1a0122c57c6fp@chr17:31817987..31818013, +
1.31e-86FFCP PHASE1:Mm9::chr10:127668442..127668453,+#_081e6863227a6e39750b1a0122c57c6fp@chr10:127668442..127668453, +
1.31e-86FFCP PHASE2:Mm9::chr11:77532283..77532316,-#_081e6863227a6e39750b1a0122c57c6fp@chr11:77532283..77532316, -
1.31e-86FFCP PHASE1:Mm9::chr14:118451218..118451221,-#_081e6863227a6e39750b1a0122c57c6fp4@Dct
1.31e-86FFCP PHASE2:Mm9::chr17:31815126..31815139,-#_081e6863227a6e39750b1a0122c57c6fp@chr17:31815126..31815139, -
1.31e-86FFCP PHASE2:Mm9::chr10:127668442..127668453,+#_081e6863227a6e39750b1a0122c57c6fp@chr10:127668442..127668453, +
1.31e-86FFCP PHASE2:Mm9::chr17:31818106..31818119,+#_081e6863227a6e39750b1a0122c57c6fp@chr17:31818106..31818119, +
1.31e-86FFCP PHASE2:Mm9::chr16:21743134..21743139,-#_081e6863227a6e39750b1a0122c57c6fp@chr16:21743134..21743139, -
1.31e-86FFCP PHASE2:Mm9::chr3:129525389..129525400,-#_081e6863227a6e39750b1a0122c57c6fp@chr3:129525389..129525400, -
1.31e-86FFCP PHASE1:Mm9::chr3:129525389..129525400,-#_081e6863227a6e39750b1a0122c57c6fp@chr3:129525389..129525400, -
1.31e-86FFCP PHASE2:Mm9::chr4:133799669..133799683,+#_081e6863227a6e39750b1a0122c57c6fp1@E130218I03Rik
1.31e-86FFCP PHASE2:Mm9::chr11:3622163..3622187,-#_081e6863227a6e39750b1a0122c57c6fp8@Osbp2
1.31e-86FFCP PHASE1:Mm9::chr17:31818263..31818276,+#_081e6863227a6e39750b1a0122c57c6fp@chr17:31818263..31818276, +
1.31e-86FFCP PHASE1:Mm9::chr10:67364011..67364018,-#_081e6863227a6e39750b1a0122c57c6fp5@Zfp365
1.31e-86FFCP PHASE1:Mm9::chr2:90827760..90827769,+#_081e6863227a6e39750b1a0122c57c6fp6@Celf1
1.31e-86FFCP PHASE1:Mm9::chr16:21743134..21743139,-#_081e6863227a6e39750b1a0122c57c6fp@chr16:21743134..21743139, -
1.31e-86FFCP PHASE1:Mm9::chr17:31818106..31818119,+#_081e6863227a6e39750b1a0122c57c6fp@chr17:31818106..31818119, +
1.31e-86FFCP PHASE1:Mm9::chr11:3622163..3622187,-#_081e6863227a6e39750b1a0122c57c6fp8@Osbp2
1.31e-86FFCP PHASE2:Mm9::chr17:31817987..31818013,+#_081e6863227a6e39750b1a0122c57c6fp@chr17:31817987..31818013, +
1.31e-86FFCP PHASE2:Mm9::chr9:89697580..89697585,-#_081e6863227a6e39750b1a0122c57c6fp1@Mir184
1.31e-86FFCP PHASE1:Mm9::chr11:77532391..77532408,-#_081e6863227a6e39750b1a0122c57c6fp@chr11:77532391..77532408, -
1.31e-86FFCP PHASE2:Mm9::chr14:118451218..118451221,-#_081e6863227a6e39750b1a0122c57c6fp4@Dct
1.31e-86FFCP PHASE1:Mm9::chr4:133799669..133799683,+#_081e6863227a6e39750b1a0122c57c6fp1@E130218I03Rik
1.31e-86FFCP PHASE2:Mm9::chr11:3622192..3622225,-#_081e6863227a6e39750b1a0122c57c6fp3@Osbp2
1.31e-86FFCP PHASE1:Mm9::chr11:3622192..3622225,-#_081e6863227a6e39750b1a0122c57c6fp3@Osbp2
1.31e-86FFCP PHASE1:Mm9::chr17:31815126..31815139,-#_081e6863227a6e39750b1a0122c57c6fp@chr17:31815126..31815139, -
1.31e-86FFCP PHASE2:Mm9::chr2:90827760..90827769,+#_081e6863227a6e39750b1a0122c57c6fp6@Celf1
1.31e-86FFCP PHASE2:Mm9::chr17:31818263..31818276,+#_081e6863227a6e39750b1a0122c57c6fp@chr17:31818263..31818276, +
1.31e-86FFCP PHASE1:Mm9::chr9:89697580..89697585,-#_081e6863227a6e39750b1a0122c57c6fp1@Mir184
1.31e-86FFCP PHASE1:Mm9::chr11:77532283..77532316,-#_081e6863227a6e39750b1a0122c57c6fp@chr11:77532283..77532316, -
1.31e-86FFCP PHASE2:Mm9::chr11:77532391..77532408,-#_081e6863227a6e39750b1a0122c57c6fp@chr11:77532391..77532408, -
2.3e-78FFCP PHASE1:Mm9::chr7:64675015..64675028,+#_6b5b733c81d23353b222115c18812150p@chr7:64675015..64675028, +
2.3e-78FFCP PHASE2:Mm9::chr7:64675015..64675028,+#_6b5b733c81d23353b222115c18812150p@chr7:64675015..64675028, +
2.3e-78FFCP PHASE1:Mm9::chr10:127668637..127668650,+#_6b5b733c81d23353b222115c18812150p3@LOC100504989, p3@Timeless
2.3e-78FFCP PHASE2:Mm9::chr10:127668637..127668650,+#_6b5b733c81d23353b222115c18812150p3@LOC100504989, p3@Timeless
2.82e-78FFCP PHASE1:Mm9::chr2:105509100..105509107,+#_1d3f4e8da18b9890b27d634a2a7aa446p6@Pax6
2.82e-78FFCP PHASE2:Mm9::chr2:105509100..105509107,+#_1d3f4e8da18b9890b27d634a2a7aa446p6@Pax6
2.82e-78FFCP PHASE2:Mm9::chr6:97891135..97891147,+#_1d3f4e8da18b9890b27d634a2a7aa446p@chr6:97891135..97891147, +
2.82e-78FFCP PHASE1:Mm9::chr6:97891135..97891147,+#_1d3f4e8da18b9890b27d634a2a7aa446p@chr6:97891135..97891147, +
3.46e-78FFCP PHASE1:Mm9::chr14:49498256..49498278,+#_853aae653feee41b5307b0b9aeb8a1acp1@4933429O19Rik
3.46e-78FFCP PHASE2:Mm9::chr14:49498256..49498278,+#_853aae653feee41b5307b0b9aeb8a1acp1@4933429O19Rik
4.97e-77FFCP PHASE2:Mm9::chr15:36655026..36655032,+#_86194975a725ddb50b763593c96cbad4p@chr15:36655026..36655032, +
4.97e-77FFCP PHASE2:Mm9::chr10:127668799..127668810,+#_86194975a725ddb50b763593c96cbad4p5@LOC100504989, p5@Timeless
4.97e-77FFCP PHASE1:Mm9::chr1:38092602..38092616,+#_86194975a725ddb50b763593c96cbad4p@chr1:38092602..38092616, +
4.97e-77FFCP PHASE2:Mm9::chr5:112681470..112681483,-#_86194975a725ddb50b763593c96cbad4p@chr5:112681470..112681483, -
4.97e-77FFCP PHASE2:Mm9::chr5:112691047..112691066,+#_86194975a725ddb50b763593c96cbad4p@chr5:112691047..112691066, +
4.97e-77FFCP PHASE1:Mm9::chr8:77582194..77582219,+#_86194975a725ddb50b763593c96cbad4p@chr8:77582194..77582219, +
4.97e-77FFCP PHASE1:Mm9::chr5:112686483..112686494,+#_86194975a725ddb50b763593c96cbad4p@chr5:112686483..112686494, +
4.97e-77FFCP PHASE1:Mm9::chr5:112696408..112696421,-#_86194975a725ddb50b763593c96cbad4p@chr5:112696408..112696421, -
4.97e-77FFCP PHASE2:Mm9::chr8:77582194..77582219,+#_86194975a725ddb50b763593c96cbad4p@chr8:77582194..77582219, +
4.97e-77FFCP PHASE2:Mm9::chr5:112690729..112690741,+#_86194975a725ddb50b763593c96cbad4p@chr5:112690729..112690741, +
4.97e-77FFCP PHASE2:Mm9::chr17:31818629..31818644,+#_86194975a725ddb50b763593c96cbad4p@chr17:31818629..31818644, +
4.97e-77FFCP PHASE2:Mm9::chr14:49501519..49501530,-#_86194975a725ddb50b763593c96cbad4p@chr14:49501519..49501530, -
4.97e-77FFCP PHASE1:Mm9::chr14:35413322..35413333,-#_86194975a725ddb50b763593c96cbad4p1@Opn4
4.97e-77FFCP PHASE1:Mm9::chr16:56204438..56204451,+#_86194975a725ddb50b763593c96cbad4p1@Impg2
4.97e-77FFCP PHASE1:Mm9::chr5:113504891..113504916,-#_86194975a725ddb50b763593c96cbad4p@chr5:113504891..113504916, -
4.97e-77FFCP PHASE2:Mm9::chr16:56204438..56204451,+#_86194975a725ddb50b763593c96cbad4p1@Impg2
4.97e-77FFCP PHASE2:Mm9::chr5:112696408..112696421,-#_86194975a725ddb50b763593c96cbad4p@chr5:112696408..112696421, -
4.97e-77FFCP PHASE1:Mm9::chr6:85969237..85969247,+#_86194975a725ddb50b763593c96cbad4p@chr6:85969237..85969247, +
4.97e-77FFCP PHASE2:Mm9::chr1:152166537..152166579,+#_86194975a725ddb50b763593c96cbad4p1@Pdc
4.97e-77FFCP PHASE1:Mm9::chr5:112675556..112675574,-#_86194975a725ddb50b763593c96cbad4p@chr5:112675556..112675574, -
4.97e-77FFCP PHASE1:Mm9::chr3:34488839..34488876,+#_86194975a725ddb50b763593c96cbad4p1@ENSMUST00000173365
4.97e-77FFCP PHASE1:Mm9::chr7:28282354..28282365,+#_86194975a725ddb50b763593c96cbad4p@chr7:28282354..28282365, +
4.97e-77FFCP PHASE1:Mm9::chr5:112691047..112691066,+#_86194975a725ddb50b763593c96cbad4p@chr5:112691047..112691066, +
4.97e-77FFCP PHASE2:Mm9::chr5:112690636..112690656,+#_86194975a725ddb50b763593c96cbad4p@chr5:112690636..112690656, +
4.97e-77FFCP PHASE1:Mm9::chr5:112690729..112690741,+#_86194975a725ddb50b763593c96cbad4p@chr5:112690729..112690741, +
4.97e-77FFCP PHASE1:Mm9::chr5:113506190..113506202,-#_86194975a725ddb50b763593c96cbad4p@chr5:113506190..113506202, -
4.97e-77FFCP PHASE2:Mm9::chr17:31817947..31817965,+#_86194975a725ddb50b763593c96cbad4p@chr17:31817947..31817965, +
4.97e-77FFCP PHASE1:Mm9::chr10:127668480..127668491,+#_86194975a725ddb50b763593c96cbad4p@chr10:127668480..127668491, +
4.97e-77FFCP PHASE2:Mm9::chr5:113506006..113506025,-#_86194975a725ddb50b763593c96cbad4p@chr5:113506006..113506025, -
4.97e-77FFCP PHASE2:Mm9::chr3:34488839..34488876,+#_86194975a725ddb50b763593c96cbad4p1@ENSMUST00000173365
4.97e-77FFCP PHASE1:Mm9::chr9:107964319..107964338,-#_86194975a725ddb50b763593c96cbad4p11@Rnf123
4.97e-77FFCP PHASE2:Mm9::chr1:65147201..65147212,-#_86194975a725ddb50b763593c96cbad4p@chr1:65147201..65147212, -
4.97e-77FFCP PHASE1:Mm9::chr1:65147201..65147212,-#_86194975a725ddb50b763593c96cbad4p@chr1:65147201..65147212, -
4.97e-77FFCP PHASE2:Mm9::chr5:112690744..112690755,+#_86194975a725ddb50b763593c96cbad4p@chr5:112690744..112690755, +
4.97e-77FFCP PHASE2:Mm9::chr2:93906955..93906973,-#_86194975a725ddb50b763593c96cbad4p2@Hsd17b12
4.97e-77FFCP PHASE2:Mm9::chr11:95705150..95705170,+#_86194975a725ddb50b763593c96cbad4p3@Gngt2
4.97e-77FFCP PHASE2:Mm9::chr10:127668480..127668491,+#_86194975a725ddb50b763593c96cbad4p@chr10:127668480..127668491, +
4.97e-77FFCP PHASE1:Mm9::chr1:38092538..38092550,+#_86194975a725ddb50b763593c96cbad4p@chr1:38092538..38092550, +
4.97e-77FFCP PHASE2:Mm9::chr7:29477874..29477889,+#_86194975a725ddb50b763593c96cbad4p6@Fbxo27
4.97e-77FFCP PHASE1:Mm9::chr17:31816514..31816526,+#_86194975a725ddb50b763593c96cbad4p@chr17:31816514..31816526, +
4.97e-77FFCP PHASE1:Mm9::chr5:112690636..112690656,+#_86194975a725ddb50b763593c96cbad4p@chr5:112690636..112690656, +
4.97e-77FFCP PHASE2:Mm9::chr17:31818215..31818239,-#_86194975a725ddb50b763593c96cbad4p@chr17:31818215..31818239, -
4.97e-77FFCP PHASE2:Mm9::chr4:19208009..19208054,+#_86194975a725ddb50b763593c96cbad4p1@Cngb3
4.97e-77FFCP PHASE2:Mm9::chr5:112675556..112675574,-#_86194975a725ddb50b763593c96cbad4p@chr5:112675556..112675574, -
4.97e-77FFCP PHASE1:Mm9::chr4:19208009..19208054,+#_86194975a725ddb50b763593c96cbad4p1@Cngb3
4.97e-77FFCP PHASE1:Mm9::chr5:112698505..112698537,-#_86194975a725ddb50b763593c96cbad4p@chr5:112698505..112698537, -
4.97e-77FFCP PHASE2:Mm9::chr3:129525405..129525428,-#_86194975a725ddb50b763593c96cbad4p1@Rrh
4.97e-77FFCP PHASE1:Mm9::chr3:129525405..129525428,-#_86194975a725ddb50b763593c96cbad4p1@Rrh
4.97e-77FFCP PHASE2:Mm9::chr9:107964319..107964338,-#_86194975a725ddb50b763593c96cbad4p11@Rnf123
4.97e-77FFCP PHASE1:Mm9::chr5:112681470..112681483,-#_86194975a725ddb50b763593c96cbad4p@chr5:112681470..112681483, -
4.97e-77FFCP PHASE1:Mm9::chr10:93761330..93761358,-#_86194975a725ddb50b763593c96cbad4p1@Gm4792
4.97e-77FFCP PHASE2:Mm9::chr10:93761330..93761358,-#_86194975a725ddb50b763593c96cbad4p1@Gm4792
4.97e-77FFCP PHASE2:Mm9::chr5:112698505..112698537,-#_86194975a725ddb50b763593c96cbad4p@chr5:112698505..112698537, -
4.97e-77FFCP PHASE1:Mm9::chr5:112690744..112690755,+#_86194975a725ddb50b763593c96cbad4p@chr5:112690744..112690755, +
4.97e-77FFCP PHASE2:Mm9::chr1:38092602..38092616,+#_86194975a725ddb50b763593c96cbad4p@chr1:38092602..38092616, +
4.97e-77FFCP PHASE2:Mm9::chr14:35413322..35413333,-#_86194975a725ddb50b763593c96cbad4p1@Opn4
4.97e-77FFCP PHASE1:Mm9::chr2:93906955..93906973,-#_86194975a725ddb50b763593c96cbad4p2@Hsd17b12
4.97e-77FFCP PHASE2:Mm9::chr1:65147224..65147236,-#_86194975a725ddb50b763593c96cbad4p@chr1:65147224..65147236, -

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