Personal tools

CL:0000001: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{CL
{{CL
|id=CL:0000001
|id=CL:0000001
|name=primary cell line cell
|name=primary cell culture cell
|namespace=cell
|namespace=cell
|def=
|def="A cell culture cell that is part of a cell culture that does not have the capacity to proliferate indefinitely." [ReO:mhb]
|xref=BTO:0002290
|xref=BTO:0002290
|is_a=CL:0000010
|is_a=CL:0000010
|synonym=
|synonym="mortal cell culture cell" EXACT [ReO:mhb];;"primary cell line cell" RELATED []
|comment=
|comment=
|alt_id=
|alt_id=
Line 20: Line 20:
|located_in=
|located_in=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|preceded_by=
}}
}}

Revision as of 17:35, 15 June 2012

Name:primary cell culture cell
Namespace:cell
Definition:"A cell culture cell that is part of a cell culture that does not have the capacity to proliferate indefinitely." [ReO:mhb]
Xrefs:
links:
BTO:0002290
Synonyms: "mortal cell culture cell" EXACT [ReO:mhb]
"primary cell line cell" RELATED []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000010(cell culture cell;;obsolete_cell line cell)



Children


is a:FF:0000005 (primary cell line sample),FF:10446-106F5 ()

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000001 (primary cell culture cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results for this cluster