UBERON:0000463: Difference between revisions
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|def="Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body." [CARO:MAH] | |def="Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body." [CARO:MAH] | ||
|xref=AAO:0010839;;AEO:0000004;;BILA:0000004;;CARO:0000004;;EHDAA2:0003004;;FBbt:00007019;;FMA:9669;;galen:BodySubstance;;HAO:0000004;;MA:0002450;;ncithesaurus:Body_Fluid_or_Substance;;SPD:0000008;;TGMA:0001824;;XAO:0004001;;ZFA:0001487 | |xref=AAO:0010839;;AEO:0000004;;BILA:0000004;;CARO:0000004;;EHDAA2:0003004;;FBbt:00007019;;FMA:9669;;galen:BodySubstance;;HAO:0000004;;MA:0002450;;ncithesaurus:Body_Fluid_or_Substance;;SPD:0000008;;TAO:0001487;;TGMA:0001824;;XAO:0004001;;ZFA:0001487 | ||
|is_a=UBERON:0000465 | |is_a=UBERON:0000465 | ||
|synonym="body fluid or substance" EXACT [MA:0002450];;"body substance" EXACT [FMA:9669];;"organism substance" EXACT [];;"portion of body substance" EXACT [FMA:9669] | |synonym="body fluid or substance" EXACT [MA:0002450];;"body substance" EXACT [FMA:9669];;"organism substance" EXACT [];;"portion of body substance" EXACT [FMA:9669] | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset=upper_level | |subset=upper_level | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 16:56, 26 June 2012
| Name: | portion of organism substance | ||
|---|---|---|---|
| Definition: | "Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body." [CARO:MAH] | ||
| Xrefs: |
| ||
| Synonyms: |
"body fluid or substance" EXACT [MA:0002450] "body substance" EXACT [FMA:9669] "organism substance" EXACT [] "portion of body substance" EXACT [FMA:9669] | ||
| Alt_id: | UBERON:CARO_0000004-FBbt_00007019 | ||
| Subset: | upper_level |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000465(material anatomical entity) |
|---|
Children
| is a: | UBERON:0006312 (ocular refractive media),UBERON:0006314 (bodily fluid) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10053-101G8 (blood, adult, pool1)
- 10266-104D5
- 10268-104D7 (eye - vitreous humor, donor1)
- 10294-104G6 (cerebrospinal fluid, donor2)
- 10296-104G8
- 10322-105A7
- 10324-105A9
- 10449-106F8 (cord blood derived cell line:COBL-a untreated)
- 10452-106G2 (cord blood derived cell line:COBL-a 24h infection(-C))
- 10453-106G3 (cord blood derived cell line:COBL-a 24h infection)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000463 (portion of organism substance), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.41e-121 | FFCP PHASE2:Hg19::chr1:205236716..205236728,+#_1846f6d890cebe3451ed9a176f00532d | p13@TMCC2 |
| 2.41e-121 | FFCP PHASE1:Hg19::chr1:205236716..205236728,+#_1846f6d890cebe3451ed9a176f00532d | p13@TMCC2 |
| 2.31e-117 | FFCP PHASE1:Hg19::chr4:74847473..74847482,-#_94cabe1dd8c3ff7cfc83050e0f45b17e | p@chr4:74847473..74847482, - |
| 2.31e-117 | FFCP PHASE2:Hg19::chr14:75444134..75444136,-#_94cabe1dd8c3ff7cfc83050e0f45b17e | p@chr14:75444134..75444136, - |
| 2.31e-117 | FFCP PHASE2:Hg19::chr20:54933899..54933911,+#_94cabe1dd8c3ff7cfc83050e0f45b17e | p7@FAM210B |
| 2.31e-117 | FFCP PHASE2:Hg19::chr9:38090057..38090092,+#_94cabe1dd8c3ff7cfc83050e0f45b17e | p@chr9:38090057..38090092, + |
| 2.31e-117 | FFCP PHASE2:Hg19::chr11:125491251..125491253,-#_94cabe1dd8c3ff7cfc83050e0f45b17e | p@chr11:125491251..125491253, - |
| 2.31e-117 | FFCP PHASE1:Hg19::chr9:38090057..38090092,+#_94cabe1dd8c3ff7cfc83050e0f45b17e | p@chr9:38090057..38090092, + |
| 2.31e-117 | FFCP PHASE1:Hg19::chr16:31539534..31539538,+#_94cabe1dd8c3ff7cfc83050e0f45b17e | p4@AHSP |
| 2.31e-117 | FFCP PHASE2:Hg19::chr2:192318775..192318777,-#_94cabe1dd8c3ff7cfc83050e0f45b17e | p@chr2:192318775..192318777, - |
| 2.31e-117 | FFCP PHASE2:Hg19::chr2:127434629..127434640,+#_94cabe1dd8c3ff7cfc83050e0f45b17e | p@chr2:127434629..127434640, + |
| 2.31e-117 | FFCP PHASE1:Hg19::chr11:118962235..118962238,+#_94cabe1dd8c3ff7cfc83050e0f45b17e | p5@HMBS |
| 2.31e-117 | FFCP PHASE1:Hg19::chr12:111678218..111678221,+#_94cabe1dd8c3ff7cfc83050e0f45b17e | p@chr12:111678218..111678221, + |
| 2.31e-117 | FFCP PHASE1:Hg19::chr11:125491251..125491253,-#_94cabe1dd8c3ff7cfc83050e0f45b17e | p@chr11:125491251..125491253, - |
| 2.31e-117 | FFCP PHASE1:Hg19::chr16:29810067..29810071,+#_94cabe1dd8c3ff7cfc83050e0f45b17e | p@chr16:29810067..29810071, + |
| 2.31e-117 | FFCP PHASE1:Hg19::chr7:44973137..44973140,-#_94cabe1dd8c3ff7cfc83050e0f45b17e | p@chr7:44973137..44973140, - |
| 2.31e-117 | FFCP PHASE1:Hg19::chr14:81627978..81627994,-#_94cabe1dd8c3ff7cfc83050e0f45b17e | p@chr14:81627978..81627994, - |
| 2.31e-117 | FFCP PHASE1:Hg19::chr14:75444134..75444136,-#_94cabe1dd8c3ff7cfc83050e0f45b17e | p@chr14:75444134..75444136, - |
| 2.31e-117 | FFCP PHASE2:Hg19::chr11:118962235..118962238,+#_94cabe1dd8c3ff7cfc83050e0f45b17e | p5@HMBS |
| 2.31e-117 | FFCP PHASE1:Hg19::chr20:54933899..54933911,+#_94cabe1dd8c3ff7cfc83050e0f45b17e | p7@FAM210B |
| 2.31e-117 | FFCP PHASE2:Hg19::chr12:111678218..111678221,+#_94cabe1dd8c3ff7cfc83050e0f45b17e | p@chr12:111678218..111678221, + |
| 2.31e-117 | FFCP PHASE1:Hg19::chr14:65501285..65501318,+#_94cabe1dd8c3ff7cfc83050e0f45b17e | p@chr14:65501285..65501318, + |
| 2.31e-117 | FFCP PHASE2:Hg19::chr14:65501285..65501318,+#_94cabe1dd8c3ff7cfc83050e0f45b17e | p@chr14:65501285..65501318, + |
| 2.31e-117 | FFCP PHASE2:Hg19::chr16:31539534..31539538,+#_94cabe1dd8c3ff7cfc83050e0f45b17e | p4@AHSP |
| 2.31e-117 | FFCP PHASE2:Hg19::chr7:44973137..44973140,-#_94cabe1dd8c3ff7cfc83050e0f45b17e | p@chr7:44973137..44973140, - |
| 2.31e-117 | FFCP PHASE2:Hg19::chr11:61044581..61044587,-#_94cabe1dd8c3ff7cfc83050e0f45b17e | p@chr11:61044581..61044587, - |
| 2.31e-117 | FFCP PHASE1:Hg19::chr11:61044581..61044587,-#_94cabe1dd8c3ff7cfc83050e0f45b17e | p@chr11:61044581..61044587, - |
| 2.31e-117 | FFCP PHASE2:Hg19::chr4:74847473..74847482,-#_94cabe1dd8c3ff7cfc83050e0f45b17e | p@chr4:74847473..74847482, - |
| 2.31e-117 | FFCP PHASE1:Hg19::chr2:192318775..192318777,-#_94cabe1dd8c3ff7cfc83050e0f45b17e | p@chr2:192318775..192318777, - |
| 2.31e-117 | FFCP PHASE1:Hg19::chr12:829787..829796,-#_94cabe1dd8c3ff7cfc83050e0f45b17e | p@chr12:829787..829796, - |
| 2.31e-117 | FFCP PHASE2:Hg19::chr17:42336860..42336865,-#_94cabe1dd8c3ff7cfc83050e0f45b17e | p@chr17:42336860..42336865, - |
| 2.31e-117 | FFCP PHASE2:Hg19::chr12:829787..829796,-#_94cabe1dd8c3ff7cfc83050e0f45b17e | p@chr12:829787..829796, - |
| 2.31e-117 | FFCP PHASE2:Hg19::chr16:29810067..29810071,+#_94cabe1dd8c3ff7cfc83050e0f45b17e | p@chr16:29810067..29810071, + |
| 2.31e-117 | FFCP PHASE1:Hg19::chr2:127434629..127434640,+#_94cabe1dd8c3ff7cfc83050e0f45b17e | p@chr2:127434629..127434640, + |
| 2.31e-117 | FFCP PHASE1:Hg19::chr17:42336860..42336865,-#_94cabe1dd8c3ff7cfc83050e0f45b17e | p@chr17:42336860..42336865, - |
| 2.31e-117 | FFCP PHASE2:Hg19::chr14:81627978..81627994,-#_94cabe1dd8c3ff7cfc83050e0f45b17e | p@chr14:81627978..81627994, - |
| 8.26e-109 | FFCP PHASE2:Hg19::chr6:148938884..148938891,+#_77e0d2ebf7522106b46d6669e875bbf2 | p@chr6:148938884..148938891, + |
| 8.26e-109 | FFCP PHASE1:Hg19::chr6:148938884..148938891,+#_77e0d2ebf7522106b46d6669e875bbf2 | p@chr6:148938884..148938891, + |
| 8.26e-109 | FFCP PHASE1:Hg19::chr2:192701558..192701565,-#_77e0d2ebf7522106b46d6669e875bbf2 | p@chr2:192701558..192701565, - |
| 8.26e-109 | FFCP PHASE2:Hg19::chr2:192701558..192701565,-#_77e0d2ebf7522106b46d6669e875bbf2 | p@chr2:192701558..192701565, - |
| 8.23e-106 | FFCP PHASE2:Hg19::chr5:95843224..95843228,-#_f3a243b10696115414dc4d9c05a5e275 | p@chr5:95843224..95843228, - |
| 8.23e-106 | FFCP PHASE1:Hg19::chr7:30950369..30950387,+#_f3a243b10696115414dc4d9c05a5e275 | p@chr7:30950369..30950387, + |
| 8.23e-106 | FFCP PHASE1:Hg19::chr6:156352553..156352562,-#_f3a243b10696115414dc4d9c05a5e275 | p@chr6:156352553..156352562, - |
| 8.23e-106 | FFCP PHASE2:Hg19::chr12:30576643..30576644,-#_f3a243b10696115414dc4d9c05a5e275 | p@chr12:30576643..30576644, - |
| 8.23e-106 | FFCP PHASE1:Hg19::chr5:95843224..95843228,-#_f3a243b10696115414dc4d9c05a5e275 | p@chr5:95843224..95843228, - |
| 8.23e-106 | FFCP PHASE2:Hg19::chr6:156352553..156352562,-#_f3a243b10696115414dc4d9c05a5e275 | p@chr6:156352553..156352562, - |
| 8.23e-106 | FFCP PHASE2:Hg19::chr11:76367785..76367794,-#_f3a243b10696115414dc4d9c05a5e275 | p5@ENST00000531511 |
| 8.23e-106 | FFCP PHASE1:Hg19::chr11:76367785..76367794,-#_f3a243b10696115414dc4d9c05a5e275 | p5@ENST00000531511 |
| 8.23e-106 | FFCP PHASE1:Hg19::chr3:142671745..142671768,-#_f3a243b10696115414dc4d9c05a5e275 | p@chr3:142671745..142671768, - |
| 8.23e-106 | FFCP PHASE1:Hg19::chr17:42335778..42335781,-#_f3a243b10696115414dc4d9c05a5e275 | p4@SLC4A1 |
| 8.23e-106 | FFCP PHASE2:Hg19::chr1:154912672..154912683,+#_f3a243b10696115414dc4d9c05a5e275 | p@chr1:154912672..154912683, + |
| 8.23e-106 | FFCP PHASE2:Hg19::chr11:76367970..76367987,-#_f3a243b10696115414dc4d9c05a5e275 | p2@ENST00000531511 |
| 8.23e-106 | FFCP PHASE2:Hg19::chr11:5246742..5246755,+#_f3a243b10696115414dc4d9c05a5e275 | p7@CU675538 |
| 8.23e-106 | FFCP PHASE1:Hg19::chr10:46076393..46076404,-#_f3a243b10696115414dc4d9c05a5e275 | p@chr10:46076393..46076404, - |
| 8.23e-106 | FFCP PHASE1:Hg19::chr10:8724326..8724327,-#_f3a243b10696115414dc4d9c05a5e275 | p@chr10:8724326..8724327, - |
| 8.23e-106 | FFCP PHASE1:Hg19::chr2:23680232..23680238,-#_f3a243b10696115414dc4d9c05a5e275 | p@chr2:23680232..23680238, - |
| 8.23e-106 | FFCP PHASE2:Hg19::chr2:127434578..127434589,+#_f3a243b10696115414dc4d9c05a5e275 | p@chr2:127434578..127434589, + |
| 8.23e-106 | FFCP PHASE1:Hg19::chr1:154912672..154912683,+#_f3a243b10696115414dc4d9c05a5e275 | p@chr1:154912672..154912683, + |
| 8.23e-106 | FFCP PHASE2:Hg19::chr8:21861540..21861544,+#_f3a243b10696115414dc4d9c05a5e275 | p@chr8:21861540..21861544, + |
| 8.23e-106 | FFCP PHASE2:Hg19::chr10:8724326..8724327,-#_f3a243b10696115414dc4d9c05a5e275 | p@chr10:8724326..8724327, - |
| 8.23e-106 | FFCP PHASE1:Hg19::chr11:5246715..5246726,+#_f3a243b10696115414dc4d9c05a5e275 | p8@CU675538 |
| 8.23e-106 | FFCP PHASE2:Hg19::chr3:142671745..142671768,-#_f3a243b10696115414dc4d9c05a5e275 | p@chr3:142671745..142671768, - |
| 8.23e-106 | FFCP PHASE1:Hg19::chr11:76367970..76367987,-#_f3a243b10696115414dc4d9c05a5e275 | p2@ENST00000531511 |
| 8.23e-106 | FFCP PHASE2:Hg19::chr12:938316..938322,+#_f3a243b10696115414dc4d9c05a5e275 | p@chr12:938316..938322, + |
| 8.23e-106 | FFCP PHASE2:Hg19::chr10:46076393..46076404,-#_f3a243b10696115414dc4d9c05a5e275 | p@chr10:46076393..46076404, - |
| 8.23e-106 | FFCP PHASE2:Hg19::chr1:161137023..161137027,+#_f3a243b10696115414dc4d9c05a5e275 | p@chr1:161137023..161137027, + |
| 8.23e-106 | FFCP PHASE2:Hg19::chr11:5246715..5246726,+#_f3a243b10696115414dc4d9c05a5e275 | p8@CU675538 |
| 8.23e-106 | FFCP PHASE2:Hg19::chr17:42337173..42337177,-#_f3a243b10696115414dc4d9c05a5e275 | p@chr17:42337173..42337177, - |
| 8.23e-106 | FFCP PHASE1:Hg19::chr11:5246742..5246755,+#_f3a243b10696115414dc4d9c05a5e275 | p7@CU675538 |
| 8.23e-106 | FFCP PHASE1:Hg19::chr8:21861540..21861544,+#_f3a243b10696115414dc4d9c05a5e275 | p@chr8:21861540..21861544, + |
| 8.23e-106 | FFCP PHASE1:Hg19::chr2:127434578..127434589,+#_f3a243b10696115414dc4d9c05a5e275 | p@chr2:127434578..127434589, + |
| 8.23e-106 | FFCP PHASE1:Hg19::chr1:161137023..161137027,+#_f3a243b10696115414dc4d9c05a5e275 | p@chr1:161137023..161137027, + |
| 8.23e-106 | FFCP PHASE1:Hg19::chr12:30576643..30576644,-#_f3a243b10696115414dc4d9c05a5e275 | p@chr12:30576643..30576644, - |
| 8.23e-106 | FFCP PHASE2:Hg19::chr17:42335778..42335781,-#_f3a243b10696115414dc4d9c05a5e275 | p4@SLC4A1 |
| 8.23e-106 | FFCP PHASE2:Hg19::chr2:23680232..23680238,-#_f3a243b10696115414dc4d9c05a5e275 | p@chr2:23680232..23680238, - |
| 8.23e-106 | FFCP PHASE1:Hg19::chr12:938316..938322,+#_f3a243b10696115414dc4d9c05a5e275 | p@chr12:938316..938322, + |
| 8.23e-106 | FFCP PHASE1:Hg19::chr17:42337173..42337177,-#_f3a243b10696115414dc4d9c05a5e275 | p@chr17:42337173..42337177, - |
| 8.23e-106 | FFCP PHASE2:Hg19::chr7:30950369..30950387,+#_f3a243b10696115414dc4d9c05a5e275 | p@chr7:30950369..30950387, + |
| 9.3e-106 | FFCP PHASE2:Hg19::chr7:18520409..18520411,-#_5e9aafc55115bc1f5a2d557f61ea9323 | p@chr7:18520409..18520411, - |
| 9.3e-106 | FFCP PHASE2:Hg19::chr3:39430391..39430424,+#_5e9aafc55115bc1f5a2d557f61ea9323 | p@chr3:39430391..39430424, + |
| 9.3e-106 | FFCP PHASE2:Hg19::chr11:235547..235556,-#_5e9aafc55115bc1f5a2d557f61ea9323 | p@chr11:235547..235556, - |
| 9.3e-106 | FFCP PHASE1:Hg19::chr3:24179318..24179327,+#_5e9aafc55115bc1f5a2d557f61ea9323 | p@chr3:24179318..24179327, + |
| 9.3e-106 | FFCP PHASE2:Hg19::chr3:24179318..24179327,+#_5e9aafc55115bc1f5a2d557f61ea9323 | p@chr3:24179318..24179327, + |
| 9.3e-106 | FFCP PHASE2:Hg19::chr19:17146840..17146843,-#_5e9aafc55115bc1f5a2d557f61ea9323 | p@chr19:17146840..17146843, - |
| 9.3e-106 | FFCP PHASE1:Hg19::chr11:235547..235556,-#_5e9aafc55115bc1f5a2d557f61ea9323 | p@chr11:235547..235556, - |
| 9.3e-106 | FFCP PHASE1:Hg19::chr7:18520409..18520411,-#_5e9aafc55115bc1f5a2d557f61ea9323 | p@chr7:18520409..18520411, - |
| 9.3e-106 | FFCP PHASE1:Hg19::chr3:39430391..39430424,+#_5e9aafc55115bc1f5a2d557f61ea9323 | p@chr3:39430391..39430424, + |
| 9.3e-106 | FFCP PHASE1:Hg19::chr19:17146840..17146843,-#_5e9aafc55115bc1f5a2d557f61ea9323 | p@chr19:17146840..17146843, - |
| 1.05e-105 | FFCP PHASE1:Hg19::chr3:151067996..151068011,-#_4659414bbc476134f11c2d6b73b1cb40 | p@chr3:151067996..151068011, - |
| 1.05e-105 | FFCP PHASE1:Hg19::chr13:59545633..59545635,-#_4659414bbc476134f11c2d6b73b1cb40 | p@chr13:59545633..59545635, - |
| 1.05e-105 | FFCP PHASE2:Hg19::chr3:151067996..151068011,-#_4659414bbc476134f11c2d6b73b1cb40 | p@chr3:151067996..151068011, - |
| 1.05e-105 | FFCP PHASE2:Hg19::chr13:59545633..59545635,-#_4659414bbc476134f11c2d6b73b1cb40 | p@chr13:59545633..59545635, - |
| 1.34e-105 | FFCP PHASE2:Hg19::chr4:99783676..99783681,-#_0cba99c98ed1b7ca84d19cbeb20a97bc | p@chr4:99783676..99783681, - |
| 1.34e-105 | FFCP PHASE1:Hg19::chr4:99783676..99783681,-#_0cba99c98ed1b7ca84d19cbeb20a97bc | p@chr4:99783676..99783681, - |
| 1.87e-104 | FFCP PHASE1:Hg19::chr4:52905409..52905410,-#_775a757402c8f8a8dd603bc89719b5e3 | p@chr4:52905409..52905410, - |
| 1.87e-104 | FFCP PHASE1:Hg19::chr8:21927844..21927847,+#_775a757402c8f8a8dd603bc89719b5e3 | p@chr8:21927844..21927847, + |
| 1.87e-104 | FFCP PHASE2:Hg19::chr1:206320318..206320322,+#_775a757402c8f8a8dd603bc89719b5e3 | p8@CTSE |
| 1.87e-104 | FFCP PHASE2:Hg19::chr4:171855577..171855579,-#_775a757402c8f8a8dd603bc89719b5e3 | p@chr4:171855577..171855579, - |
| 1.87e-104 | FFCP PHASE1:Hg19::chr1:206320318..206320322,+#_775a757402c8f8a8dd603bc89719b5e3 | p8@CTSE |
| 1.87e-104 | FFCP PHASE1:Hg19::chr1:17803417..17803419,-#_775a757402c8f8a8dd603bc89719b5e3 | p@chr1:17803417..17803419, - |
