UBERON:0000475: Difference between revisions
From FANTOM5_SSTAR
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|obo_creation_date= | |obo_creation_date= | ||
|subset=uberon_slim;;upper_level | |subset=uberon_slim;;upper_level | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 16:57, 26 June 2012
| Name: | organism subdivision | ||
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| Definition: | "Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism." [CARO:0000032, CARO:MAH, Wikipedia:Body_part] | ||
| Xrefs: |
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| Synonyms: |
"body part" RELATED [] "body region" RELATED [FMA:7153] "cardinal body part" RELATED [FMA:7153] | ||
| Comments: | Editor note: revise after CARO2. todo - check the inclusion of FMA 'cardinal body part here', and check child terms for consistency | ||
| Alt_id: | UBERON:CARO_0000032-FBbt_00007009-FMA_67504-MIAA_0000293-XAO_0003013-ZFA_0001308 | ||
| Subset: |
uberon_slim upper_level |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000061(anatomical structure) |
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Children
| is a: | UBERON:0000026 (appendage),UBERON:0000153 (anterior region of body),UBERON:0000154 (posterior region of body),UBERON:0000310 (breast),UBERON:0000341 (throat),UBERON:0000974 (neck),UBERON:0001137 (dorsum),UBERON:0001444 (subdivision of head),UBERON:0001467 (shoulder),UBERON:0002355 (pelvis),UBERON:0005881 (limb outgrowth),UBERON:0007029 (surface),UBERON:0007811 (craniocervical region),UBERON:0009113 (thymic region),UBERON:0009569 (subdivision of trunk),UBERON:0010707 (appendage girdle complex),UBERON:0010758 (subdivision of organism along appendicular axis),UBERON:0011676 (subdivision of organism along main body axis),UBERON:0013701 (main body axis),UBERON:0013702 (body proper),UBERON:5002544 (digit plus metapodial segment) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10015-101C6 (esophagus, adult, pool1)
- 10017-101C8 (kidney, adult, pool1)
- 10018-101C9 (liver, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10027-101D9 (thymus, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10030-101E3 (retina, adult, pool1)
- 10043-101F7 (thymus, fetal, pool1)
... further results Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10015-101C6 (esophagus, adult, pool1)
- 10017-101C8 (kidney, adult, pool1)
- 10018-101C9 (liver, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10027-101D9 (thymus, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10030-101E3 (retina, adult, pool1)
- 10043-101F7 (thymus, fetal, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000475 (organism subdivision), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results
