UBERON:0002530: Difference between revisions
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|def="A gland is an organ in an animal's body that synthesizes a substance for release such as hormones or breast milk, often into the bloodstream (endocrine gland) or into cavities inside the body or its outer surface (exocrine gland). A gland is an organ specialised for secretion[GO]." [Wikipedia:Gland] | |def="A gland is an organ in an animal's body that synthesizes a substance for release such as hormones or breast milk, often into the bloodstream (endocrine gland) or into cavities inside the body or its outer surface (exocrine gland). A gland is an organ specialised for secretion[GO]." [Wikipedia:Gland] | ||
|xref=AAO:0000212;;AEO:0000096;;BTO:0000522;;EFO:0000797;;EHDAA:2161;;EHDAA:2181;;EHDAA:2967;;EHDAA:4475;;EHDAA:6522 | |xref=AAO:0000212;;AEO:0000096;;BTO:0000522;;EFO:0000797;;EHDAA2:0003096;;EHDAA:2161;;EHDAA:2181;;EHDAA:2967;;EHDAA:4475;;EHDAA:6522;;EMAPA:18425;;FMA:86294;;galen:Gland;;HAO:0000375;;http://upload.wikimedia.org/wikipedia/commons/a/a1/Gray1026.png;;MAT:0000021;;MIAA:0000021;;ncithesaurus:Gland;;OpenCyc:Mx4rwP3vyJwpEbGdrcN5Y29ycA;;SCTID:134358001 | ||
|is_a=UBERON:0000062 | |is_a=UBERON:0000062 | ||
|synonym="Druese" RELATED [BTO:0000522];;"glandula" RELATED [BTO:0000522] | |synonym="Druese" RELATED [BTO:0000522];;"glandula" RELATED LATIN [Wikipedia:Gland];;"glandula" RELATED [BTO:0000522] | ||
|comment=none of the major model vertebrate ontologies have a class called gland. Is this class superfluous? Also GO says secretion by tissue. | |comment=none of the major model vertebrate ontologies have a class called gland. Is this class superfluous? Also GO says secretion by tissue. | ||
|alt_id=UBERON:MIAA_0000021 | |alt_id=UBERON:MIAA_0000021 | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset=uberon_slim | |subset=uberon_slim | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
Revision as of 17:02, 26 June 2012
| Name: | gland | ||
|---|---|---|---|
| Definition: | "A gland is an organ in an animal's body that synthesizes a substance for release such as hormones or breast milk, often into the bloodstream (endocrine gland) or into cavities inside the body or its outer surface (exocrine gland). A gland is an organ specialised for secretion[GO]." [Wikipedia:Gland] | ||
| Xrefs: |
| ||
| Synonyms: |
"Druese" RELATED [BTO:0000522] "glandula" RELATED LATIN [Wikipedia:Gland] "glandula" RELATED [BTO:0000522] | ||
| Comments: | none of the major model vertebrate ontologies have a class called gland. Is this class superfluous? Also GO says secretion by tissue. | ||
| Alt_id: | UBERON:MIAA_0000021 | ||
| Subset: | uberon_slim |
Gray1026.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000062(organ) |
|---|
Children
| is a: | UBERON:0002365 (exocrine gland),UBERON:0002368 (endocrine gland),UBERON:0003296 (gland of diencephalon),UBERON:0003297 (gland of integumental system),UBERON:0003408 (gland of gut),UBERON:0003937 (sex gland),UBERON:0005058 (hemolymphoid system gland) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10018-101C9 (liver, adult, pool1)
- 10022-101D4 (prostate, adult, pool1)
- 10027-101D9 (thymus, adult, pool1)
- 10028-101E1 (thyroid, adult, pool1)
- 10043-101F7 (thymus, fetal, pool1)
- 10060-101H6 (thyroid, fetal, donor1)
- 10081-102A9 (adrenal gland, adult, pool1)
- 10086-102B5 (liver, fetal, pool1)
- 10089-102B8
- 10092-102C2
... further results Mouse (Mus musculus)
- 10018-101C9 (liver, adult, pool1)
- 10022-101D4 (prostate, adult, pool1)
- 10027-101D9 (thymus, adult, pool1)
- 10028-101E1 (thyroid, adult, pool1)
- 10043-101F7 (thymus, fetal, pool1)
- 10060-101H6 (thyroid, fetal, donor1)
- 10081-102A9 (adrenal gland, adult, pool1)
- 10086-102B5 (liver, fetal, pool1)
- 10089-102B8
- 10092-102C2
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002530 (gland), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.87e-27 | FFCP PHASE1:Hg19::chr17:7017634..7017649,-#_af320fad8bbbbc822eb3bc867c9416bc | p7@ASGR2 |
| 3.87e-27 | FFCP PHASE2:Hg19::chr17:7017634..7017649,-#_af320fad8bbbbc822eb3bc867c9416bc | p7@ASGR2 |
| 8.82e-27 | FFCP PHASE1:Hg19::chr8:144417558..144417572,-#_c3a9689906e1ca234aaedeb5ca13d00c | p7@TOP1MT |
| 8.82e-27 | FFCP PHASE2:Hg19::chr2:21233797..21233804,-#_c3a9689906e1ca234aaedeb5ca13d00c | p58@APOB |
| 8.82e-27 | FFCP PHASE1:Hg19::chr2:21233797..21233804,-#_c3a9689906e1ca234aaedeb5ca13d00c | p58@APOB |
| 8.82e-27 | FFCP PHASE2:Hg19::chr8:144417558..144417572,-#_c3a9689906e1ca234aaedeb5ca13d00c | p7@TOP1MT |
| 9.86e-27 | FFCP PHASE2:Hg19::chr6:64231600..64231615,+#_606d6e18c29e3305a22338515033ab8f | p24@PTP4A1 |
| 9.86e-27 | FFCP PHASE1:Hg19::chr6:64231600..64231615,+#_606d6e18c29e3305a22338515033ab8f | p24@PTP4A1 |
| 4.5e-26 | FFCP PHASE1:Hg19::chr12:100867777..100867788,+#_1f708f1b0e963e885d48159e192c3cb4 | p5@NR1H4 |
| 4.5e-26 | FFCP PHASE2:Hg19::chr12:100867777..100867788,+#_1f708f1b0e963e885d48159e192c3cb4 | p5@NR1H4 |
| 6.7e-26 | FFCP PHASE1:Hg19::chr6:8652489..8652515,+#_070e81cac69435d48e1040471b20a1d5 | p1@HULC |
| 6.7e-26 | FFCP PHASE2:Hg19::chr6:8652489..8652515,+#_070e81cac69435d48e1040471b20a1d5 | p1@HULC |
| 1.74e-25 | FFCP PHASE2:Hg19::chr12:100867653..100867677,+#_2e14f555ec76ea2bafb6405fde4bff88 | p2@NR1H4 |
| 1.74e-25 | FFCP PHASE1:Hg19::chr12:100867653..100867677,+#_2e14f555ec76ea2bafb6405fde4bff88 | p2@NR1H4 |
| 5.7e-25 | FFCP PHASE2:Hg19::chr1:161192171..161192185,-#_eba1d067b6f0657d9ab34643f572ef65 | p@chr1:161192171..161192185, - |
| 5.7e-25 | FFCP PHASE1:Hg19::chr1:161192171..161192185,-#_eba1d067b6f0657d9ab34643f572ef65 | p@chr1:161192171..161192185, - |
| 3.01e-24 | FFCP PHASE2:Hg19::chrX:153769426..153769436,+#_ccb45a0385fc4f77f132cb08d0300041 | p18@IKBKG |
| 3.01e-24 | FFCP PHASE1:Hg19::chrX:153769426..153769436,+#_ccb45a0385fc4f77f132cb08d0300041 | p18@IKBKG |
| 3.56e-24 | FFCP PHASE2:Hg19::chr10:7745167..7745178,+#_6308949328cc540603abfa3bf8480b9a | p3@ITIH2 |
| 3.56e-24 | FFCP PHASE1:Hg19::chr10:7745167..7745178,+#_6308949328cc540603abfa3bf8480b9a | p3@ITIH2 |
| 3.98e-24 | FFCP PHASE2:Hg19::chr18:60206766..60206778,+#_8b6ef6a557e4d819bb884c1a13bf8e6d | p17@ZCCHC2 |
| 3.98e-24 | FFCP PHASE1:Hg19::chr18:60206766..60206778,+#_8b6ef6a557e4d819bb884c1a13bf8e6d | p17@ZCCHC2 |
| 4.45e-24 | FFCP PHASE1:Hg19::chr2:97216132..97216143,+#_1f4e6c47acdce80fcf2f5896ffd87820 | p@chr2:97216132..97216143, + |
| 4.45e-24 | FFCP PHASE2:Hg19::chr2:97216132..97216143,+#_1f4e6c47acdce80fcf2f5896ffd87820 | p@chr2:97216132..97216143, + |
| 1.05e-23 | FFCP PHASE1:Hg19::chr2:21239379..21239390,-#_fd864e217277af619b56353c58f91eb6 | p@chr2:21239379..21239390, - |
| 1.05e-23 | FFCP PHASE1:Hg19::chr20:10349456..10349475,-#_fd864e217277af619b56353c58f91eb6 | p1@ENST00000421143 |
| 1.05e-23 | FFCP PHASE2:Hg19::chr2:21258509..21258518,-#_fd864e217277af619b56353c58f91eb6 | p@chr2:21258509..21258518, - |
| 1.05e-23 | FFCP PHASE2:Hg19::chr2:21239379..21239390,-#_fd864e217277af619b56353c58f91eb6 | p@chr2:21239379..21239390, - |
| 1.05e-23 | FFCP PHASE2:Hg19::chr20:10349456..10349475,-#_fd864e217277af619b56353c58f91eb6 | p1@ENST00000421143 |
| 1.05e-23 | FFCP PHASE1:Hg19::chr2:21228233..21228242,-#_fd864e217277af619b56353c58f91eb6 | p56@APOB |
| 1.05e-23 | FFCP PHASE2:Hg19::chr10:82049381..82049384,-#_fd864e217277af619b56353c58f91eb6 | p9@MAT1A |
| 1.05e-23 | FFCP PHASE1:Hg19::chr20:22566089..22566097,-#_fd864e217277af619b56353c58f91eb6 | p6@FOXA2 |
| 1.05e-23 | FFCP PHASE1:Hg19::chr10:82049381..82049384,-#_fd864e217277af619b56353c58f91eb6 | p9@MAT1A |
| 1.05e-23 | FFCP PHASE2:Hg19::chr20:22566089..22566097,-#_fd864e217277af619b56353c58f91eb6 | p6@FOXA2 |
| 1.05e-23 | FFCP PHASE2:Hg19::chr2:21228233..21228242,-#_fd864e217277af619b56353c58f91eb6 | p56@APOB |
| 1.05e-23 | FFCP PHASE1:Hg19::chr2:21258509..21258518,-#_fd864e217277af619b56353c58f91eb6 | p@chr2:21258509..21258518, - |
| 1.11e-23 | FFCP PHASE2:Hg19::chr14:94844853..94844862,-#_ea4a26807de787e18d368f67ad0cad15 | p35@SERPINA1 |
| 1.11e-23 | FFCP PHASE2:Hg19::chr1:230846000..230846009,-#_ea4a26807de787e18d368f67ad0cad15 | p@chr1:230846000..230846009, - |
| 1.11e-23 | FFCP PHASE1:Hg19::chr14:94844853..94844862,-#_ea4a26807de787e18d368f67ad0cad15 | p35@SERPINA1 |
| 1.11e-23 | FFCP PHASE1:Hg19::chr1:230846000..230846009,-#_ea4a26807de787e18d368f67ad0cad15 | p@chr1:230846000..230846009, - |
| 1.2e-23 | FFCP PHASE1:Hg19::chr2:21232865..21232870,-#_58249c8d7ebb9da5824d8da39aa8e680 | p10@BC172787 |
| 1.2e-23 | FFCP PHASE2:Hg19::chr2:21230675..21230682,-#_58249c8d7ebb9da5824d8da39aa8e680 | p51@APOB |
| 1.2e-23 | FFCP PHASE2:Hg19::chr2:21231676..21231681,-#_58249c8d7ebb9da5824d8da39aa8e680 | p75@APOB |
| 1.2e-23 | FFCP PHASE1:Hg19::chr2:21234502..21234510,-#_58249c8d7ebb9da5824d8da39aa8e680 | p43@APOB |
| 1.2e-23 | FFCP PHASE1:Hg19::chr2:21256369..21256378,-#_58249c8d7ebb9da5824d8da39aa8e680 | p@chr2:21256369..21256378, - |
| 1.2e-23 | FFCP PHASE1:Hg19::chr2:20793103..20793113,-#_58249c8d7ebb9da5824d8da39aa8e680 | p@chr2:20793103..20793113, - |
| 1.2e-23 | FFCP PHASE2:Hg19::chr2:21232865..21232870,-#_58249c8d7ebb9da5824d8da39aa8e680 | p10@BC172787 |
| 1.2e-23 | FFCP PHASE1:Hg19::chr2:21231676..21231681,-#_58249c8d7ebb9da5824d8da39aa8e680 | p75@APOB |
| 1.2e-23 | FFCP PHASE2:Hg19::chr10:7763609..7763619,+#_58249c8d7ebb9da5824d8da39aa8e680 | p@chr10:7763609..7763619, + |
| 1.2e-23 | FFCP PHASE2:Hg19::chr2:21234502..21234510,-#_58249c8d7ebb9da5824d8da39aa8e680 | p43@APOB |
| 1.2e-23 | FFCP PHASE1:Hg19::chr2:44066386..44066398,-#_58249c8d7ebb9da5824d8da39aa8e680 | p6@ABCG5 |
| 1.2e-23 | FFCP PHASE1:Hg19::chr12:57828432..57828442,+#_58249c8d7ebb9da5824d8da39aa8e680 | p7@INHBC |
| 1.2e-23 | FFCP PHASE1:Hg19::chr17:7082861..7082882,-#_58249c8d7ebb9da5824d8da39aa8e680 | p9@ASGR1 |
| 1.2e-23 | FFCP PHASE2:Hg19::chr17:7082861..7082882,-#_58249c8d7ebb9da5824d8da39aa8e680 | p9@ASGR1 |
| 1.2e-23 | FFCP PHASE2:Hg19::chr12:57828432..57828442,+#_58249c8d7ebb9da5824d8da39aa8e680 | p7@INHBC |
| 1.2e-23 | FFCP PHASE2:Hg19::chr2:44066386..44066398,-#_58249c8d7ebb9da5824d8da39aa8e680 | p6@ABCG5 |
| 1.2e-23 | FFCP PHASE1:Hg19::chr2:21230675..21230682,-#_58249c8d7ebb9da5824d8da39aa8e680 | p51@APOB |
| 1.2e-23 | FFCP PHASE2:Hg19::chr2:21256369..21256378,-#_58249c8d7ebb9da5824d8da39aa8e680 | p@chr2:21256369..21256378, - |
| 1.2e-23 | FFCP PHASE1:Hg19::chr10:7763609..7763619,+#_58249c8d7ebb9da5824d8da39aa8e680 | p@chr10:7763609..7763619, + |
| 1.2e-23 | FFCP PHASE2:Hg19::chr2:20793103..20793113,-#_58249c8d7ebb9da5824d8da39aa8e680 | p@chr2:20793103..20793113, - |
| 2.14e-23 | FFCP PHASE1:Mm9::chr16:45986558..45986587,-#_9b5e68aec0f450f1bc97ae4bc2418aac | p@chr16:45986558..45986587, - |
| 2.14e-23 | FFCP PHASE2:Mm9::chr16:45986558..45986587,-#_9b5e68aec0f450f1bc97ae4bc2418aac | p@chr16:45986558..45986587, - |
| 3.56e-23 | FFCP PHASE1:Hg19::chr18:60206744..60206765,+#_234f3180b556cc9a0eb0c3b0e4ced5cd | p6@ZCCHC2 |
| 3.56e-23 | FFCP PHASE2:Hg19::chr18:60206744..60206765,+#_234f3180b556cc9a0eb0c3b0e4ced5cd | p6@ZCCHC2 |
| 3.65e-23 | FFCP PHASE1:Hg19::chr1:161192149..161192162,-#_099820ead1436e9f951b57529a5b257e | p@chr1:161192149..161192162, - |
| 3.65e-23 | FFCP PHASE2:Hg19::chr1:161192149..161192162,-#_099820ead1436e9f951b57529a5b257e | p@chr1:161192149..161192162, - |
| 4.02e-23 | FFCP PHASE1:Hg19::chr10:101841398..101841415,-#_88ba25e4cf9cf636cb1c256686588df5 | p2@CPN1 |
| 4.02e-23 | FFCP PHASE2:Hg19::chr10:101841398..101841415,-#_88ba25e4cf9cf636cb1c256686588df5 | p2@CPN1 |
| 4.12e-23 | FFCP PHASE2:Hg19::chr17:6593378..6593379,-#_9d8549817f11eecadde25469febc51e6 | p@chr17:6593378..6593379, - |
| 4.12e-23 | FFCP PHASE1:Hg19::chr17:6593378..6593379,-#_9d8549817f11eecadde25469febc51e6 | p@chr17:6593378..6593379, - |
| 4.22e-23 | FFCP PHASE1:Hg19::chr10:101841588..101841632,-#_0f25354f914ee320682604b2c16ab471 | p1@CPN1 |
| 4.22e-23 | FFCP PHASE2:Hg19::chr10:101841588..101841632,-#_0f25354f914ee320682604b2c16ab471 | p1@CPN1 |
| 6.51e-23 | FFCP PHASE1:Hg19::chr22:37505474..37505478,-#_4461b32c0679fc56eca59be730f16fd9 | p3@TMPRSS6 |
| 6.51e-23 | FFCP PHASE2:Hg19::chr22:37505474..37505478,-#_4461b32c0679fc56eca59be730f16fd9 | p3@TMPRSS6 |
| 1.0e-22 | FFCP PHASE2:Hg19::chr3:47484661..47484686,-#_71e0a83eef97bd4e0b795078d0ee8af4 | p4@SCAP |
| 1.0e-22 | FFCP PHASE1:Hg19::chr3:47484661..47484686,-#_71e0a83eef97bd4e0b795078d0ee8af4 | p4@SCAP |
| 1.79e-22 | FFCP PHASE2:Hg19::chr13:44980101..44980132,-#_142473fab618578f24429789174713b2 | p1@uc001uzl.2 |
| 1.79e-22 | FFCP PHASE1:Hg19::chr13:44980101..44980132,-#_142473fab618578f24429789174713b2 | p1@uc001uzl.2 |
| 1.81e-22 | FFCP PHASE2:Mm9::chr8:131012371..131012382,-#_07d745eb379a869ec12534f6760629a7 | p2@uc009nzu.1 |
| 1.81e-22 | FFCP PHASE1:Mm9::chr8:131012371..131012382,-#_07d745eb379a869ec12534f6760629a7 | p2@uc009nzu.1 |
| 1.81e-22 | FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_07d745eb379a869ec12534f6760629a7 | p8@uc009bpa.1 |
| 1.81e-22 | FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_07d745eb379a869ec12534f6760629a7 | p8@uc009bpa.1 |
| 2.51e-22 | FFCP PHASE2:Mm9::chr7:121912281..121912295,+#_859926659753f6dd9f4b90775dd33308 | p6@Insc |
| 2.51e-22 | FFCP PHASE1:Mm9::chr7:121912281..121912295,+#_859926659753f6dd9f4b90775dd33308 | p6@Insc |
| 2.66e-22 | FFCP PHASE1:Mm9::chr5:90897694..90897705,+#_5954f1dff8c517119e2ec3862c8bbe28 | p@chr5:90897694..90897705, + |
| 2.66e-22 | FFCP PHASE2:Mm9::chr5:90897694..90897705,+#_5954f1dff8c517119e2ec3862c8bbe28 | p@chr5:90897694..90897705, + |
| 2.8e-22 | FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_d1fbd1cecd78929405d2c22feeadd477 | p4@uc009bpa.1 |
| 2.8e-22 | FFCP PHASE2:Mm9::chr4:137275159..137275168,+#_d1fbd1cecd78929405d2c22feeadd477 | p@chr4:137275159..137275168, + |
| 2.8e-22 | FFCP PHASE1:Mm9::chr4:137275159..137275168,+#_d1fbd1cecd78929405d2c22feeadd477 | p@chr4:137275159..137275168, + |
| 2.8e-22 | FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_d1fbd1cecd78929405d2c22feeadd477 | p4@uc009bpa.1 |
| 3.24e-22 | FFCP PHASE2:Mm9::chr19:25169885..25169900,+#_5f52a197801376908fc062e4b60d8b96 | p@chr19:25169885..25169900, + |
| 3.24e-22 | FFCP PHASE1:Mm9::chr19:25169885..25169900,+#_5f52a197801376908fc062e4b60d8b96 | p@chr19:25169885..25169900, + |
| 3.73e-22 | FFCP PHASE1:Hg19::chr17:7082560..7082572,-#_9b7333117ba8229eda08eca82be24378 | p4@ASGR1 |
| 3.73e-22 | FFCP PHASE2:Hg19::chr17:7082560..7082572,-#_9b7333117ba8229eda08eca82be24378 | p4@ASGR1 |
| 3.93e-22 | FFCP PHASE2:Hg19::chr10:72083665..72083701,-#_4157f72644e937d4062cb68004f9aa4a | p2@LRRC20 |
| 3.93e-22 | FFCP PHASE1:Hg19::chr10:72083665..72083701,-#_4157f72644e937d4062cb68004f9aa4a | p2@LRRC20 |
| 3.98e-22 | FFCP PHASE1:Mm9::chr3:151770161..151770165,-#_970fd2984144cd43016b2ee8b113b2f4 | p3@Gipc2 |
| 3.98e-22 | FFCP PHASE2:Mm9::chr3:151770161..151770165,-#_970fd2984144cd43016b2ee8b113b2f4 | p3@Gipc2 |
| 4.58e-22 | FFCP PHASE2:Hg19::chr9:116838918..116838930,-#_b0610d8dd1ab3f39b7b45f129f8cb928 | p@chr9:116838918..116838930, - |
| 4.58e-22 | FFCP PHASE1:Hg19::chr1:11107289..11107304,-#_b0610d8dd1ab3f39b7b45f129f8cb928 | p1@MASP2 |
