UBERON:0003296: Difference between revisions
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|def="A gland that is part of a diencephalon [Obol]." [OBOL:automatic] | |def="A gland that is part of a diencephalon [Obol]." [OBOL:automatic] | ||
|xref= | |xref=EHDAA2:0000395;;EHDAA:4475;;EMAPA:16646;;EMAPA:16897;;VHOG:0000653 | ||
|is_a=UBERON:0002530;;UBERON:0004121 | |is_a=UBERON:0002530;;UBERON:0004121 | ||
|synonym="between brain gland" EXACT [OBOL:automatic];;"diencephalon gland" EXACT [OBOL:automatic];;"gland of between brain" EXACT [OBOL:automatic];;"gland of interbrain" EXACT [OBOL:automatic];;"gland of mature diencephalon" EXACT [OBOL:automatic];;"interbrain gland" EXACT [OBOL:automatic];;"mature diencephalon gland" EXACT [OBOL:automatic] | |synonym="between brain gland" EXACT [OBOL:automatic];;"diencephalon gland" EXACT [OBOL:automatic];;"gland of between brain" EXACT [OBOL:automatic];;"gland of interbrain" EXACT [OBOL:automatic];;"gland of mature diencephalon" EXACT [OBOL:automatic];;"interbrain gland" EXACT [OBOL:automatic];;"mature diencephalon gland" EXACT [OBOL:automatic] | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:03, 26 June 2012
| Name: | gland of diencephalon | ||
|---|---|---|---|
| Definition: | "A gland that is part of a diencephalon [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: |
"between brain gland" EXACT [OBOL:automatic] "diencephalon gland" EXACT [OBOL:automatic] "gland of between brain" EXACT [OBOL:automatic] "gland of interbrain" EXACT [OBOL:automatic] "gland of mature diencephalon" EXACT [OBOL:automatic] "interbrain gland" EXACT [OBOL:automatic] "mature diencephalon gland" EXACT [OBOL:automatic] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002530(gland),UBERON:0004121(ectoderm-derived structure) |
|---|
Children
| is a: | UBERON:0000007 (pituitary gland),UBERON:0001905 (pineal body) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10160-103A7 (pineal gland, adult, donor10252)
- 10162-103A9 (pituitary gland, adult, donor10252)
- 10179-103C8 (pineal gland - adult, donor10196)
- 10180-103C9 (pituitary gland - adult, donor10196)
- 10377-105G8 (pineal gland, adult, donor10258)
- 10378-105G9 (pituitary gland, adult, donor10258)
- 11649-122E2
- 11726-123D7
- 11744-123F7
- 1265-44F5 (pituitary gland, embryo E17)
... further results Mouse (Mus musculus)
- 10160-103A7 (pineal gland, adult, donor10252)
- 10162-103A9 (pituitary gland, adult, donor10252)
- 10179-103C8 (pineal gland - adult, donor10196)
- 10180-103C9 (pituitary gland - adult, donor10196)
- 10377-105G8 (pineal gland, adult, donor10258)
- 10378-105G9 (pituitary gland, adult, donor10258)
- 11649-122E2
- 11726-123D7
- 11744-123F7
- 1265-44F5 (pituitary gland, embryo E17)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003296 (gland of diencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.57e-195 | FFCP PHASE2:Hg19::chr19:7979708..7979734,+#_041e7e095e0433a5f5e2a2f6abfd85af | p@chr19:7979708..7979734, + |
| 2.57e-195 | FFCP PHASE1:Hg19::chr19:7979708..7979734,+#_041e7e095e0433a5f5e2a2f6abfd85af | p@chr19:7979708..7979734, + |
| 1.0e-156 | FFCP PHASE1:Hg19::chr5:136328571..136328599,-#_a1bc2e9d68446f0c07516434f3605aee | p11@SPOCK1 |
| 1.0e-156 | FFCP PHASE2:Hg19::chr5:136328571..136328599,-#_a1bc2e9d68446f0c07516434f3605aee | p11@SPOCK1 |
| 1.5e-156 | FFCP PHASE2:Hg19::chr12:128210626..128210641,-#_b3480ceef493666046a1c06662b262ce | p@chr12:128210626..128210641, - |
| 1.5e-156 | FFCP PHASE1:Hg19::chr12:128210626..128210641,-#_b3480ceef493666046a1c06662b262ce | p@chr12:128210626..128210641, - |
| 6.94e-147 | FFCP PHASE1:Hg19::chr19:49520344..49520367,-#_3c7fe58ee68581c87674381e7310afbe | p1@LHB |
| 6.94e-147 | FFCP PHASE2:Hg19::chr19:49519930..49519937,-#_3c7fe58ee68581c87674381e7310afbe | p@chr19:49519930..49519937, - |
| 6.94e-147 | FFCP PHASE2:Hg19::chr19:7979644..7979653,+#_3c7fe58ee68581c87674381e7310afbe | p@chr19:7979644..7979653, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr19:7979677..7979703,+#_3c7fe58ee68581c87674381e7310afbe | p@chr19:7979677..7979703, + |
| 6.94e-147 | FFCP PHASE2:Hg19::chr19:49520344..49520367,-#_3c7fe58ee68581c87674381e7310afbe | p1@LHB |
| 6.94e-147 | FFCP PHASE2:Hg19::chr19:7979677..7979703,+#_3c7fe58ee68581c87674381e7310afbe | p@chr19:7979677..7979703, + |
| 6.94e-147 | FFCP PHASE1:Hg19::chr19:49519930..49519937,-#_3c7fe58ee68581c87674381e7310afbe | p@chr19:49519930..49519937, - |
| 6.94e-147 | FFCP PHASE1:Hg19::chr19:7979644..7979653,+#_3c7fe58ee68581c87674381e7310afbe | p@chr19:7979644..7979653, + |
| 2.79e-131 | FFCP PHASE2:Hg19::chr1:99693441..99693485,-#_162ecb6a52ab7532e623acb216eb7a11 | p@chr1:99693441..99693485, - |
| 2.79e-131 | FFCP PHASE1:Hg19::chr1:99693441..99693485,-#_162ecb6a52ab7532e623acb216eb7a11 | p@chr1:99693441..99693485, - |
| 1.07e-130 | FFCP PHASE1:Hg19::chr5:133772179..133772191,+#_19e6ecc5ca8f9d9c1a5a6040e217ff51 | p5@ENST00000513329 |
| 1.07e-130 | FFCP PHASE2:Hg19::chr5:133772179..133772191,+#_19e6ecc5ca8f9d9c1a5a6040e217ff51 | p5@ENST00000513329 |
| 1.0e-112 | FFCP PHASE2:Hg19::chr5:141783725..141783734,+#_daffbf8b60612fd06df6d1c34b4f6cf5 | p3@ENST00000443800 |
| 1.0e-112 | FFCP PHASE1:Hg19::chr5:141783725..141783734,+#_daffbf8b60612fd06df6d1c34b4f6cf5 | p3@ENST00000443800 |
| 1.76e-111 | FFCP PHASE1:Hg19::chr9:139096968..139096979,-#_547c296569933891330becae011cbbca | p2@LHX3 |
| 1.76e-111 | FFCP PHASE2:Hg19::chr9:139096968..139096979,-#_547c296569933891330becae011cbbca | p2@LHX3 |
| 8.91e-111 | FFCP PHASE1:Hg19::chr22:47126639..47126654,+#_5ace75054bf71479d5a1fef30ffee88b | p@chr22:47126639..47126654, + |
| 8.91e-111 | FFCP PHASE2:Hg19::chr22:47126639..47126654,+#_5ace75054bf71479d5a1fef30ffee88b | p@chr22:47126639..47126654, + |
| 2.76e-110 | FFCP PHASE2:Hg19::chr11:75194071..75194110,-#_0d9c0c5f5240b6aabfe6064862f91b93 | p@chr11:75194071..75194110, - |
| 2.76e-110 | FFCP PHASE1:Hg19::chr15:71228905..71228915,+#_0d9c0c5f5240b6aabfe6064862f91b93 | p17@LRRC49 |
| 2.76e-110 | FFCP PHASE1:Hg19::chr4:1233005..1233017,+#_0d9c0c5f5240b6aabfe6064862f91b93 | p@chr4:1233005..1233017, + |
| 2.76e-110 | FFCP PHASE2:Hg19::chr4:1233005..1233017,+#_0d9c0c5f5240b6aabfe6064862f91b93 | p@chr4:1233005..1233017, + |
| 2.76e-110 | FFCP PHASE2:Hg19::chr15:71228905..71228915,+#_0d9c0c5f5240b6aabfe6064862f91b93 | p17@LRRC49 |
| 2.76e-110 | FFCP PHASE1:Hg19::chr11:75194071..75194110,-#_0d9c0c5f5240b6aabfe6064862f91b93 | p@chr11:75194071..75194110, - |
| 5.02e-99 | FFCP PHASE2:Hg19::chr12:128210666..128210685,-#_e10f7ee5f323a23152e5a369cbcc8d74 | p@chr12:128210666..128210685, - |
| 5.02e-99 | FFCP PHASE1:Hg19::chr12:128210666..128210685,-#_e10f7ee5f323a23152e5a369cbcc8d74 | p@chr12:128210666..128210685, - |
| 1.38e-98 | FFCP PHASE2:Hg19::chr9:139095116..139095139,+#_09220a7a11d2f7f5871951de837e5d88 | p@chr9:139095116..139095139, + |
| 1.38e-98 | FFCP PHASE1:Hg19::chr9:139095116..139095139,+#_09220a7a11d2f7f5871951de837e5d88 | p@chr9:139095116..139095139, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:54952412..54952416,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr3:54952412..54952416, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:18067959..18067962,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr11:18067959..18067962, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:17141934..17141935,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr2:17141934..17141935, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:22294755..22294768,-#_86c8842de92bb34e78ab840208c7dc62 | p9@PRL |
| 1.55e-98 | FFCP PHASE2:Hg19::chr10:80984180..80984190,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr10:80984180..80984190, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr16:18066392..18066397,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr16:18066392..18066397, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:55422858..55422866,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr12:55422858..55422866, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:80984180..80984190,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr10:80984180..80984190, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr13:52650530..52650533,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr13:52650530..52650533, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:7497646..7497649,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr2:7497646..7497649, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:74463608..74463612,+#_86c8842de92bb34e78ab840208c7dc62 | p5@AANAT |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:4224059..4224062,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr2:4224059..4224062, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:61995220..61995244,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr17:61995220..61995244, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:240177602..240177607,+#_86c8842de92bb34e78ab840208c7dc62 | p17@FMN2 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:55422858..55422866,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr12:55422858..55422866, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr18:56963107..56963117,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr18:56963107..56963117, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:17065916..17065929,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr2:17065916..17065929, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:61995906..61995914,-#_86c8842de92bb34e78ab840208c7dc62 | p6@AB591020 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:81859007..81859036,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr12:81859007..81859036, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:120842768..120842790,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr7:120842768..120842790, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:9202487..9202498,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr7:9202487..9202498, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:7338484..7338504,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr5:7338484..7338504, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:135515989..135515991,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr8:135515989..135515991, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:128170725..128170735,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr3:128170725..128170735, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:135473472..135473477,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr8:135473472..135473477, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:126582844..126582849,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr8:126582844..126582849, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:22287815..22287820,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr6:22287815..22287820, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:25391815..25391821,-#_86c8842de92bb34e78ab840208c7dc62 | p13@POMC |
| 1.55e-98 | FFCP PHASE2:Hg19::chr16:18066345..18066365,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr16:18066345..18066365, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:60826120..60826127,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr12:60826120..60826127, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chrX:54051809..54051811,+#_86c8842de92bb34e78ab840208c7dc62 | p@chrX:54051809..54051811, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr15:55470984..55471009,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr15:55470984..55471009, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:54952412..54952416,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr3:54952412..54952416, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:17141934..17141935,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr2:17141934..17141935, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:61996252..61996253,-#_86c8842de92bb34e78ab840208c7dc62 | p2@GH1, p3@CSHL1 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:22287710..22287718,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr6:22287710..22287718, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr16:50898038..50898042,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr16:50898038..50898042, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:134871183..134871197,-#_86c8842de92bb34e78ab840208c7dc62 | p3@NEUROG1 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:44903714..44903719,+#_86c8842de92bb34e78ab840208c7dc62 | p8@CAMKMT |
| 1.55e-98 | FFCP PHASE2:Hg19::chr5:119799539..119799543,+#_86c8842de92bb34e78ab840208c7dc62 | p13@PRR16 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:128170725..128170735,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr3:128170725..128170735, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:9178350..9178369,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr7:9178350..9178369, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr13:56628524..56628547,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr13:56628524..56628547, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:31003593..31003614,+#_86c8842de92bb34e78ab840208c7dc62 | p2@GHRHR |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:100942645..100942655,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr3:100942645..100942655, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr15:47662877..47662880,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr15:47662877..47662880, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:25391815..25391821,-#_86c8842de92bb34e78ab840208c7dc62 | p13@POMC |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:22287647..22287662,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr6:22287647..22287662, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chrX:146290937..146290942,+#_86c8842de92bb34e78ab840208c7dc62 | p@chrX:146290937..146290942, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chrX:54051809..54051811,+#_86c8842de92bb34e78ab840208c7dc62 | p@chrX:54051809..54051811, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr11:18041199..18041200,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr11:18041199..18041200, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:119867229..119867240,+#_86c8842de92bb34e78ab840208c7dc62 | p9@PRR16 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:99860753..99860764,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr1:99860753..99860764, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:135504314..135504320,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr8:135504314..135504320, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:31006831..31006834,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr7:31006831..31006834, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr11:18063669..18063678,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr11:18063669..18063678, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:17065916..17065929,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr2:17065916..17065929, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:18041199..18041200,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr11:18041199..18041200, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:100942645..100942655,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr3:100942645..100942655, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:87325636..87325643,-#_86c8842de92bb34e78ab840208c7dc62 | p2@POU1F1 |
| 1.55e-98 | FFCP PHASE1:Hg19::chrX:33146637..33146644,-#_86c8842de92bb34e78ab840208c7dc62 | p35@DMD |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:130017368..130017390,+#_86c8842de92bb34e78ab840208c7dc62 | p@chr8:130017368..130017390, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chrX:146290937..146290942,+#_86c8842de92bb34e78ab840208c7dc62 | p@chrX:146290937..146290942, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr16:51808960..51808964,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr16:51808960..51808964, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:99860753..99860764,-#_86c8842de92bb34e78ab840208c7dc62 | p@chr1:99860753..99860764, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:49621641..49621650,+#_86c8842de92bb34e78ab840208c7dc62 | p22@TUBA1C |
