CL:0002679: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 14: | Line 14: | ||
|obo_creation_date=2011-08-29T10:08:02Z | |obo_creation_date=2011-08-29T10:08:02Z | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
Revision as of 17:28, 26 June 2012
| Name: | natural helper lymphocyte |
|---|---|
| Namespace: | cell |
| Definition: | "A lymphocyte found in adipose tissue that lacks lineage markers of other lymphocytes but is capable of mediating TH2 cytokine responses. This cell type is found in fat associated lymphoid clusters, proliferates in response to IL2 and produce large amounts of TH2 cytokines such as IL5, IL6 and IL13" [GOC:tfm, PMID:20023630] |
| Created by: | tmeehan |
| Creation date: | 2011-08-29T10:08:02Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000542(lymphocyte) |
|---|
Children
| derives from: | FF:0011137 (mouse natural helper cells- IL2 treated sample),FF:0011138 (mouse natural helper cells- IL33 treated- 01hr sample),FF:0011139 (mouse natural helper cells- IL33 treated- day02 sample),FF:0011140 (mouse natural helper cells- naive sample),FF:0011524 (mouse natural helper cells- IL2 treated, day15 sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 12247-129H6 (natural helper cells, IL2 treated, day15, biol_rep1)
- 12248-129H7 (natural helper cells, IL2 treated, day15, biol_rep2)
- 12249-129H8 (natural helper cells, IL2 treated, day15, biol_rep3)
- 12250-129H9 (unclassfied)
- 12251-129I1 (unclassfied)
- 12252-129I2 (natural helper cells, IL33 treated, day02, biol_rep3)
- 12253-129I3 (natural helper cells, IL33 treated, 01hr, biol_rep1)
- 12254-129I4 (unclassfied)
- 12255-129I5 (unclassfied)
- 12256-129I6 (unclassfied)
... further results Mouse (Mus musculus)
- 12247-129H6 (natural helper cells, IL2 treated, day15, biol_rep1)
- 12248-129H7 (natural helper cells, IL2 treated, day15, biol_rep2)
- 12249-129H8 (natural helper cells, IL2 treated, day15, biol_rep3)
- 12250-129H9 (unclassfied)
- 12251-129I1 (unclassfied)
- 12252-129I2 (natural helper cells, IL33 treated, day02, biol_rep3)
- 12253-129I3 (natural helper cells, IL33 treated, 01hr, biol_rep1)
- 12254-129I4 (unclassfied)
- 12255-129I5 (unclassfied)
- 12256-129I6 (unclassfied)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002679 (natural helper lymphocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.62e-30 | FFCP PHASE2:Mm9::chr3:86355678..86355705,+#_8a4d0abd3d764cb294c6441cd6cb520b | p@chr3:86355678..86355705, + |
| 5.62e-30 | FFCP PHASE1:Mm9::chr3:86355678..86355705,+#_8a4d0abd3d764cb294c6441cd6cb520b | p@chr3:86355678..86355705, + |
| 8.39e-23 | FFCP PHASE2:Mm9::chr11:57645265..57645268,-#_275b4ad1d61cc38b2955b1182fb359d1 | p@chr11:57645265..57645268, - |
| 8.39e-23 | FFCP PHASE1:Mm9::chr11:57645265..57645268,-#_275b4ad1d61cc38b2955b1182fb359d1 | p@chr11:57645265..57645268, - |
| 1.39e-22 | FFCP PHASE2:Mm9::chr10:62892183..62892185,-#_5350dcb29b95b139e61313c768b92652 | p@chr10:62892183..62892185, - |
| 1.39e-22 | FFCP PHASE1:Mm9::chr10:62892183..62892185,-#_5350dcb29b95b139e61313c768b92652 | p@chr10:62892183..62892185, - |
| 5.15e-19 | FFCP PHASE2:Mm9::chr13:114939956..114939970,-#_ff8034975385f427d49d05ffe9483cba | p@chr13:114939956..114939970, - |
| 5.15e-19 | FFCP PHASE1:Mm9::chr13:114939956..114939970,-#_ff8034975385f427d49d05ffe9483cba | p@chr13:114939956..114939970, - |
| 7.74e-19 | FFCP PHASE1:Mm9::chr6:99154949..99154968,-#_4818c279aca804804a28671f9481e72f | p@chr6:99154949..99154968, - |
| 7.74e-19 | FFCP PHASE2:Mm9::chr6:99154949..99154968,-#_4818c279aca804804a28671f9481e72f | p@chr6:99154949..99154968, - |
| 1.74e-18 | FFCP PHASE1:Mm9::chr10:119799722..119799725,-#_fc0f2a79799853c8fd17d25931c1a0bf | p@chr10:119799722..119799725, - |
| 1.74e-18 | FFCP PHASE2:Mm9::chr10:104733601..104733605,-#_fc0f2a79799853c8fd17d25931c1a0bf | p@chr10:104733601..104733605, - |
| 1.74e-18 | FFCP PHASE2:Mm9::chr10:119799722..119799725,-#_fc0f2a79799853c8fd17d25931c1a0bf | p@chr10:119799722..119799725, - |
| 1.74e-18 | FFCP PHASE1:Mm9::chr10:104733601..104733605,-#_fc0f2a79799853c8fd17d25931c1a0bf | p@chr10:104733601..104733605, - |
| 1.74e-18 | FFCP PHASE2:Mm9::chr13:56710849..56710850,+#_fc0f2a79799853c8fd17d25931c1a0bf | p7@Tgfbi |
| 1.74e-18 | FFCP PHASE1:Mm9::chr13:56710849..56710850,+#_fc0f2a79799853c8fd17d25931c1a0bf | p7@Tgfbi |
| 9.51e-16 | FFCP PHASE2:Mm9::chr7:111000331..111000338,-#_88c8fe37f54517a6f7a648ff86f8174b | p@chr7:111000331..111000338, - |
| 9.51e-16 | FFCP PHASE1:Mm9::chr7:111000331..111000338,-#_88c8fe37f54517a6f7a648ff86f8174b | p@chr7:111000331..111000338, - |
| 1.33e-15 | FFCP PHASE1:Mm9::chr13:63674450..63674454,-#_5f45186f10496e7da219c05510d463b2 | p11@Ptch1 |
| 1.33e-15 | FFCP PHASE2:Mm9::chr13:63674450..63674454,-#_5f45186f10496e7da219c05510d463b2 | p11@Ptch1 |
| 1.86e-15 | FFCP PHASE1:Mm9::chr11:57642737..57642748,-#_ee0844f6d409c23998fb9bebd1377043 | p@chr11:57642737..57642748, - |
| 1.86e-15 | FFCP PHASE2:Mm9::chr11:57642737..57642748,-#_ee0844f6d409c23998fb9bebd1377043 | p@chr11:57642737..57642748, - |
| 1.86e-15 | FFCP PHASE1:Mm9::chr15:11650313..11650319,-#_ee0844f6d409c23998fb9bebd1377043 | p@chr15:11650313..11650319, - |
| 1.86e-15 | FFCP PHASE2:Mm9::chr15:11650313..11650319,-#_ee0844f6d409c23998fb9bebd1377043 | p@chr15:11650313..11650319, - |
| 1.55e-13 | FFCP PHASE2:Mm9::chr15:51621796..51621814,-#_501d7198696e7d3130965deb2c8f2ee0 | p@chr15:51621796..51621814, - |
| 1.55e-13 | FFCP PHASE1:Mm9::chr15:51621796..51621814,-#_501d7198696e7d3130965deb2c8f2ee0 | p@chr15:51621796..51621814, - |
| 3.34e-12 | FFCP PHASE1:Mm9::chr15:102849395..102849404,+#_37a9d9b4105c88ac4b1b2409953791da | p4@Hoxc4 |
| 3.34e-12 | FFCP PHASE2:Mm9::chr15:102849395..102849404,+#_37a9d9b4105c88ac4b1b2409953791da | p4@Hoxc4 |
| 4.3e-12 | FFCP PHASE2:Mm9::chr19:24750790..24750799,-#_dc799e0e0eefffd6d6c5cecc0d8174bb | p@chr19:24750790..24750799, - |
| 4.3e-12 | FFCP PHASE1:Mm9::chr19:24750790..24750799,-#_dc799e0e0eefffd6d6c5cecc0d8174bb | p@chr19:24750790..24750799, - |
| 5.53e-12 | FFCP PHASE1:Mm9::chr6:4706731..4706742,+#_dda1334c90a5df40100812f91bc33e19 | p8@Peg10 |
| 5.53e-12 | FFCP PHASE2:Mm9::chr11:32177763..32177774,-#_dda1334c90a5df40100812f91bc33e19 | p@chr11:32177763..32177774, - |
| 5.53e-12 | FFCP PHASE2:Mm9::chr17:45707413..45707418,+#_dda1334c90a5df40100812f91bc33e19 | p@chr17:45707413..45707418, + |
| 5.53e-12 | FFCP PHASE2:Mm9::chr6:4706731..4706742,+#_dda1334c90a5df40100812f91bc33e19 | p8@Peg10 |
| 5.53e-12 | FFCP PHASE1:Mm9::chr11:32177763..32177774,-#_dda1334c90a5df40100812f91bc33e19 | p@chr11:32177763..32177774, - |
| 5.53e-12 | FFCP PHASE1:Mm9::chr17:45707413..45707418,+#_dda1334c90a5df40100812f91bc33e19 | p@chr17:45707413..45707418, + |
| 7.11e-12 | FFCP PHASE1:Mm9::chr14:117749554..117749561,+#_f3287f6e7ac5991274de9df81cc547bd | p@chr14:117749554..117749561, + |
| 7.11e-12 | FFCP PHASE2:Mm9::chr6:4704193..4704201,+#_f3287f6e7ac5991274de9df81cc547bd | p@chr6:4704193..4704201, + |
| 7.11e-12 | FFCP PHASE1:Mm9::chr6:4704193..4704201,+#_f3287f6e7ac5991274de9df81cc547bd | p@chr6:4704193..4704201, + |
| 7.11e-12 | FFCP PHASE2:Mm9::chr14:117749554..117749561,+#_f3287f6e7ac5991274de9df81cc547bd | p@chr14:117749554..117749561, + |
| 1.83e-11 | FFCP PHASE2:Mm9::chr9:119350671..119350677,+#_9d52bfdc582ca6062fa3248d26689aed | p@chr9:119350671..119350677, + |
| 1.83e-11 | FFCP PHASE1:Mm9::chr9:119350671..119350677,+#_9d52bfdc582ca6062fa3248d26689aed | p@chr9:119350671..119350677, + |
| 2.9e-11 | FFCP PHASE1:Mm9::chr11:11781140..11781150,-#_0fc0cd4e47fe90a4d6ce211f2b83d238 | p@chr11:11781140..11781150, - |
| 2.9e-11 | FFCP PHASE2:Mm9::chr11:11781140..11781150,-#_0fc0cd4e47fe90a4d6ce211f2b83d238 | p@chr11:11781140..11781150, - |
| 3.65e-11 | FFCP PHASE2:Mm9::chr5:76130865..76130881,+#_bbcdd9240372691e7364e520a84f3a2e | p@chr5:76130865..76130881, + |
| 3.65e-11 | FFCP PHASE1:Mm9::chr5:76130865..76130881,+#_bbcdd9240372691e7364e520a84f3a2e | p@chr5:76130865..76130881, + |
| 5.74e-11 | FFCP PHASE1:Mm9::chr19:38171348..38171379,+#_d96663cda6bb9cc657d8518d33c0623e | p2@O3far1 |
| 5.74e-11 | FFCP PHASE2:Mm9::chr19:38171348..38171379,+#_d96663cda6bb9cc657d8518d33c0623e | p2@O3far1 |
| 7.19e-11 | FFCP PHASE1:Mm9::chr15:51621825..51621843,-#_1fb978583068421f5bbcae446bd8a8ab | p@chr15:51621825..51621843, - |
| 7.19e-11 | FFCP PHASE2:Mm9::chr15:51621825..51621843,-#_1fb978583068421f5bbcae446bd8a8ab | p@chr15:51621825..51621843, - |
| 1.12e-10 | FFCP PHASE2:Mm9::chr1:94336361..94336369,-#_eecf385c2268f574e59538c993302df2 | p@chr1:94336361..94336369, - |
| 1.12e-10 | FFCP PHASE1:Mm9::chr6:4706860..4706872,+#_eecf385c2268f574e59538c993302df2 | p10@Peg10 |
| 1.12e-10 | FFCP PHASE2:Mm9::chr6:4706860..4706872,+#_eecf385c2268f574e59538c993302df2 | p10@Peg10 |
| 1.12e-10 | FFCP PHASE2:Mm9::chr7:149846239..149846248,+#_eecf385c2268f574e59538c993302df2 | p@chr7:149846239..149846248, + |
| 1.12e-10 | FFCP PHASE1:Mm9::chr1:94336361..94336369,-#_eecf385c2268f574e59538c993302df2 | p@chr1:94336361..94336369, - |
| 1.12e-10 | FFCP PHASE1:Mm9::chr7:149846239..149846248,+#_eecf385c2268f574e59538c993302df2 | p@chr7:149846239..149846248, + |
| 8.42e-10 | FFCP PHASE2:Mm9::chr2:115874845..115874865,-#_6e5ce1d0dad4a726d4f30c815bc23cb4 | p20@Meis2 |
| 8.42e-10 | FFCP PHASE2:Mm9::chr13:48758072..48758117,-#_6e5ce1d0dad4a726d4f30c815bc23cb4 | p@chr13:48758072..48758117, - |
| 8.42e-10 | FFCP PHASE1:Mm9::chr13:48758072..48758117,-#_6e5ce1d0dad4a726d4f30c815bc23cb4 | p@chr13:48758072..48758117, - |
| 8.42e-10 | FFCP PHASE1:Mm9::chr2:115874845..115874865,-#_6e5ce1d0dad4a726d4f30c815bc23cb4 | p20@Meis2 |
| 8.42e-10 | FFCP PHASE2:Mm9::chr19:10303261..10303283,-#_6e5ce1d0dad4a726d4f30c815bc23cb4 | p@chr19:10303261..10303283, - |
| 8.42e-10 | FFCP PHASE2:Mm9::chr13:48758431..48758443,+#_6e5ce1d0dad4a726d4f30c815bc23cb4 | p3@Barx1 |
| 8.42e-10 | FFCP PHASE1:Mm9::chr13:48758431..48758443,+#_6e5ce1d0dad4a726d4f30c815bc23cb4 | p3@Barx1 |
| 8.42e-10 | FFCP PHASE1:Mm9::chr19:10303261..10303283,-#_6e5ce1d0dad4a726d4f30c815bc23cb4 | p@chr19:10303261..10303283, - |
| 1.03e-9 | FFCP PHASE1:Mm9::chr5:67486110..67486118,-#_cdd19db268d5c9f4049bc6d1cc42bccc | p@chr5:67486110..67486118, - |
| 1.03e-9 | FFCP PHASE2:Mm9::chr5:67486110..67486118,-#_cdd19db268d5c9f4049bc6d1cc42bccc | p@chr5:67486110..67486118, - |
| 1.19e-9 | FFCP PHASE2:Mm9::chr1:178766069..178766082,-#_0dcf6ad40bd42d59d53a61a386c8925c | p2@Hmga2-ps1 |
| 1.19e-9 | FFCP PHASE1:Mm9::chr1:178766069..178766082,-#_0dcf6ad40bd42d59d53a61a386c8925c | p2@Hmga2-ps1 |
| 1.44e-9 | FFCP PHASE2:Mm9::chr19:38863592..38863600,-#_df75868cd5e4392ce251e9ddd05e9149 | p@chr19:38863592..38863600, - |
| 1.44e-9 | FFCP PHASE1:Mm9::chr19:38863592..38863600,-#_df75868cd5e4392ce251e9ddd05e9149 | p@chr19:38863592..38863600, - |
| 3.04e-9 | FFCP PHASE1:Mm9::chr11:57642948..57642962,-#_2861a83ba762f9161301b3fd663db527 | p@chr11:57642948..57642962, - |
| 3.04e-9 | FFCP PHASE2:Mm9::chr11:57642948..57642962,-#_2861a83ba762f9161301b3fd663db527 | p@chr11:57642948..57642962, - |
| 3.65e-9 | FFCP PHASE2:Mm9::chr11:57645644..57645649,-#_898ff1ebb1f5273ba2162bd791bd19b7 | p3@Hand1 |
| 3.65e-9 | FFCP PHASE1:Mm9::chr11:57645644..57645649,-#_898ff1ebb1f5273ba2162bd791bd19b7 | p3@Hand1 |
| 3.65e-9 | FFCP PHASE1:Mm9::chr13:29043435..29043446,+#_898ff1ebb1f5273ba2162bd791bd19b7 | p@chr13:29043435..29043446, + |
| 3.65e-9 | FFCP PHASE2:Mm9::chr13:29043435..29043446,+#_898ff1ebb1f5273ba2162bd791bd19b7 | p@chr13:29043435..29043446, + |
| 4.39e-9 | FFCP PHASE2:Mm9::chr7:111000379..111000390,-#_409998448cc4d589a53fa2b97ee4de89 | p@chr7:111000379..111000390, - |
| 4.39e-9 | FFCP PHASE1:Mm9::chr7:111000379..111000390,-#_409998448cc4d589a53fa2b97ee4de89 | p@chr7:111000379..111000390, - |
| 5.27e-9 | FFCP PHASE1:Mm9::chr14:33691561..33691572,+#_5c10da6ca1ccf82080750f9a5a107e7e | p@chr14:33691561..33691572, + |
| 5.27e-9 | FFCP PHASE2:Mm9::chr16:77329743..77329754,+#_5c10da6ca1ccf82080750f9a5a107e7e | p14@2810055G20Rik |
| 5.27e-9 | FFCP PHASE1:Mm9::chr16:77329743..77329754,+#_5c10da6ca1ccf82080750f9a5a107e7e | p14@2810055G20Rik |
| 5.27e-9 | FFCP PHASE2:Mm9::chr2:16346144..16346149,+#_5c10da6ca1ccf82080750f9a5a107e7e | p@chr2:16346144..16346149, + |
| 5.27e-9 | FFCP PHASE2:Mm9::chr14:33691561..33691572,+#_5c10da6ca1ccf82080750f9a5a107e7e | p@chr14:33691561..33691572, + |
| 5.27e-9 | FFCP PHASE1:Mm9::chr2:16346144..16346149,+#_5c10da6ca1ccf82080750f9a5a107e7e | p@chr2:16346144..16346149, + |
| 6.33e-9 | FFCP PHASE1:Mm9::chr2:74583741..74583750,+#_b89b919c46ca211165f46c9089a0066d | p10@Hoxd3 |
| 6.33e-9 | FFCP PHASE1:Mm9::chr6:34696382..34696393,-#_b89b919c46ca211165f46c9089a0066d | p@chr6:34696382..34696393, - |
| 6.33e-9 | FFCP PHASE2:Mm9::chr2:74583741..74583750,+#_b89b919c46ca211165f46c9089a0066d | p10@Hoxd3 |
| 6.33e-9 | FFCP PHASE2:Mm9::chr6:34696382..34696393,-#_b89b919c46ca211165f46c9089a0066d | p@chr6:34696382..34696393, - |
| 7.41e-9 | FFCP PHASE1:Mm9::chr13:31717671..31717682,+#_302e8df95fd4a55ef344fa485efa5fde | p5@Foxf2 |
| 7.41e-9 | FFCP PHASE2:Mm9::chr13:31717671..31717682,+#_302e8df95fd4a55ef344fa485efa5fde | p5@Foxf2 |
| 8.81e-9 | FFCP PHASE2:Mm9::chr1:180697124..180697130,+#_26c5559c580c3e9625951b3e879827ab | p@chr1:180697124..180697130, + |
| 8.81e-9 | FFCP PHASE1:Mm9::chr1:180697124..180697130,+#_26c5559c580c3e9625951b3e879827ab | p@chr1:180697124..180697130, + |
| 1.05e-8 | FFCP PHASE2:Mm9::chr16:73046021..73046033,+#_55653d191df3d636c94aeb2497327e5a | p@chr16:73046021..73046033, + |
| 1.05e-8 | FFCP PHASE1:Mm9::chr16:73046021..73046033,+#_55653d191df3d636c94aeb2497327e5a | p@chr16:73046021..73046033, + |
| 1.05e-8 | FFCP PHASE2:Mm9::chr6:52167632..52167645,+#_55653d191df3d636c94aeb2497327e5a | p@chr6:52167632..52167645, + |
| 1.05e-8 | FFCP PHASE1:Mm9::chr6:52167632..52167645,+#_55653d191df3d636c94aeb2497327e5a | p@chr6:52167632..52167645, + |
| 1.24e-8 | FFCP PHASE2:Mm9::chr17:75562268..75562272,+#_ee66dc756cc9d0345ee92e3f2d1029f3 | p@chr17:75562268..75562272, + |
| 1.24e-8 | FFCP PHASE1:Mm9::chr17:75562268..75562272,+#_ee66dc756cc9d0345ee92e3f2d1029f3 | p@chr17:75562268..75562272, + |
| 1.47e-8 | FFCP PHASE1:Mm9::chr13:64376258..64376267,-#_e760de38b4331d3953262d014762685a | p5@Cdc14b |
| 1.47e-8 | FFCP PHASE2:Mm9::chr17:74737941..74737954,-#_e760de38b4331d3953262d014762685a | p@chr17:74737941..74737954, - |
