CL:0000079: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 15: | Line 15: | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=CL:0000357 | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
Revision as of 12:59, 27 June 2012
| Name: | stratified epithelial cell |
|---|---|
| Namespace: | cell |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000066(epithelial cell),CL:0002371(somatic cell) |
|---|---|
| develops_from: | CL:0000357(stratified epithelial stem cell) |
Children
| is a: | CL:0000240 (stratified squamous epithelial cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10843-111E6 (merkel cell carcinoma cell line:MKL-1)
- 10844-111E7 (merkel cell carcinoma cell line:MS-1)
- 11251-116E9 (Keratinocyte - oral, donor1)
- 11272-116H3 (Keratinocyte - epidermal, donor1)
- 11349-117G8 (Keratinocyte - epidermal, donor2)
- 11421-118F8 (Keratinocyte - epidermal, donor3)
Mouse (Mus musculus)
- 10843-111E6 (merkel cell carcinoma cell line:MKL-1)
- 10844-111E7 (merkel cell carcinoma cell line:MS-1)
- 11251-116E9 (Keratinocyte - oral, donor1)
- 11272-116H3 (Keratinocyte - epidermal, donor1)
- 11349-117G8 (Keratinocyte - epidermal, donor2)
- 11421-118F8 (Keratinocyte - epidermal, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000079 (stratified epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.83e-66 | FFCP PHASE1:Hg19::chr6:112466463..112466468,+#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr6:112466463..112466468, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr15:46610897..46610904,+#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr15:46610897..46610904, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr11:79659052..79659060,-#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr11:79659052..79659060, - |
| 2.83e-66 | FFCP PHASE2:Hg19::chr9:139089234..139089236,-#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr9:139089234..139089236, - |
| 2.83e-66 | FFCP PHASE1:Hg19::chr11:79659013..79659021,-#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr11:79659013..79659021, - |
| 2.83e-66 | FFCP PHASE2:Hg19::chr6:112466463..112466468,+#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr6:112466463..112466468, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr9:139089234..139089236,-#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr9:139089234..139089236, - |
| 2.83e-66 | FFCP PHASE2:Hg19::chr9:33719626..33719633,-#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr9:33719626..33719633, - |
| 2.83e-66 | FFCP PHASE2:Hg19::chr1:40770344..40770353,-#_9b40cf5a08da0290ab2f86b171c41d64 | p29@COL9A2 |
| 2.83e-66 | FFCP PHASE1:Hg19::chr15:46610847..46610851,+#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr15:46610847..46610851, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr1:40770344..40770353,-#_9b40cf5a08da0290ab2f86b171c41d64 | p29@COL9A2 |
| 2.83e-66 | FFCP PHASE2:Hg19::chr15:46610951..46610964,+#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr15:46610951..46610964, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr9:33719626..33719633,-#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr9:33719626..33719633, - |
| 2.83e-66 | FFCP PHASE2:Hg19::chr1:201288895..201288902,+#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr1:201288895..201288902, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr20:49727833..49727839,-#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr20:49727833..49727839, - |
| 2.83e-66 | FFCP PHASE1:Hg19::chr11:79659052..79659060,-#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr11:79659052..79659060, - |
| 2.83e-66 | FFCP PHASE1:Hg19::chr5:64369097..64369105,+#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr5:64369097..64369105, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr20:49727833..49727839,-#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr20:49727833..49727839, - |
| 2.83e-66 | FFCP PHASE1:Hg19::chr1:201288895..201288902,+#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr1:201288895..201288902, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr22:27043104..27043111,+#_9b40cf5a08da0290ab2f86b171c41d64 | p27@MIAT |
| 2.83e-66 | FFCP PHASE1:Hg19::chr1:216595350..216595395,-#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr1:216595350..216595395, - |
| 2.83e-66 | FFCP PHASE2:Hg19::chr5:64369097..64369105,+#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr5:64369097..64369105, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr15:46610897..46610904,+#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr15:46610897..46610904, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr1:242843433..242843446,-#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr1:242843433..242843446, - |
| 2.83e-66 | FFCP PHASE2:Hg19::chr22:27043104..27043111,+#_9b40cf5a08da0290ab2f86b171c41d64 | p27@MIAT |
| 2.83e-66 | FFCP PHASE2:Hg19::chr1:216595350..216595395,-#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr1:216595350..216595395, - |
| 2.83e-66 | FFCP PHASE1:Hg19::chr3:66452082..66452087,-#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr3:66452082..66452087, - |
| 2.83e-66 | FFCP PHASE2:Hg19::chr1:242843433..242843446,-#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr1:242843433..242843446, - |
| 2.83e-66 | FFCP PHASE2:Hg19::chr3:66452082..66452087,-#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr3:66452082..66452087, - |
| 2.83e-66 | FFCP PHASE1:Hg19::chr15:46610951..46610964,+#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr15:46610951..46610964, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr4:6356121..6356152,-#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr4:6356121..6356152, - |
| 2.83e-66 | FFCP PHASE1:Hg19::chr1:216196797..216196801,-#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr1:216196797..216196801, - |
| 2.83e-66 | FFCP PHASE2:Hg19::chr19:39401676..39401683,-#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr19:39401676..39401683, - |
| 2.83e-66 | FFCP PHASE2:Hg19::chr4:6356121..6356152,-#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr4:6356121..6356152, - |
| 2.83e-66 | FFCP PHASE2:Hg19::chr15:46610847..46610851,+#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr15:46610847..46610851, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr11:79659013..79659021,-#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr11:79659013..79659021, - |
| 2.83e-66 | FFCP PHASE2:Hg19::chr1:216196797..216196801,-#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr1:216196797..216196801, - |
| 2.83e-66 | FFCP PHASE1:Hg19::chr19:39401676..39401683,-#_9b40cf5a08da0290ab2f86b171c41d64 | p@chr19:39401676..39401683, - |
| 4.55e-50 | FFCP PHASE2:Hg19::chr1:16090914..16090925,+#_1419f780c6cc933744ad05da3f24d89b | p22@FBLIM1 |
| 4.55e-50 | FFCP PHASE1:Hg19::chr1:16090914..16090925,+#_1419f780c6cc933744ad05da3f24d89b | p22@FBLIM1 |
| 9.76e-45 | FFCP PHASE1:Hg19::chr16:53653257..53653264,-#_3ea813fe19b7bfd6ff4438af48137479 | p@chr16:53653257..53653264, - |
| 9.76e-45 | FFCP PHASE1:Hg19::chr5:64369069..64369083,+#_3ea813fe19b7bfd6ff4438af48137479 | p@chr5:64369069..64369083, + |
| 9.76e-45 | FFCP PHASE2:Hg19::chr12:65175253..65175283,-#_3ea813fe19b7bfd6ff4438af48137479 | p@chr12:65175253..65175283, - |
| 9.76e-45 | FFCP PHASE1:Hg19::chr22:35921483..35921490,-#_3ea813fe19b7bfd6ff4438af48137479 | p@chr22:35921483..35921490, - |
| 9.76e-45 | FFCP PHASE2:Hg19::chr5:64369069..64369083,+#_3ea813fe19b7bfd6ff4438af48137479 | p@chr5:64369069..64369083, + |
| 9.76e-45 | FFCP PHASE2:Hg19::chr22:35921483..35921490,-#_3ea813fe19b7bfd6ff4438af48137479 | p@chr22:35921483..35921490, - |
| 9.76e-45 | FFCP PHASE1:Hg19::chr1:155048171..155048179,+#_3ea813fe19b7bfd6ff4438af48137479 | p@chr1:155048171..155048179, + |
| 9.76e-45 | FFCP PHASE1:Hg19::chr12:65175253..65175283,-#_3ea813fe19b7bfd6ff4438af48137479 | p@chr12:65175253..65175283, - |
| 9.76e-45 | FFCP PHASE2:Hg19::chr9:33719660..33719671,-#_3ea813fe19b7bfd6ff4438af48137479 | p@chr9:33719660..33719671, - |
| 9.76e-45 | FFCP PHASE2:Hg19::chr1:155048171..155048179,+#_3ea813fe19b7bfd6ff4438af48137479 | p@chr1:155048171..155048179, + |
| 9.76e-45 | FFCP PHASE1:Hg19::chr9:33719660..33719671,-#_3ea813fe19b7bfd6ff4438af48137479 | p@chr9:33719660..33719671, - |
| 9.76e-45 | FFCP PHASE2:Hg19::chr11:128634589..128634606,+#_3ea813fe19b7bfd6ff4438af48137479 | p14@FLI1 |
| 9.76e-45 | FFCP PHASE1:Hg19::chr1:155048200..155048207,+#_3ea813fe19b7bfd6ff4438af48137479 | p@chr1:155048200..155048207, + |
| 9.76e-45 | FFCP PHASE2:Hg19::chr1:155048200..155048207,+#_3ea813fe19b7bfd6ff4438af48137479 | p@chr1:155048200..155048207, + |
| 9.76e-45 | FFCP PHASE2:Hg19::chr5:145722450..145722456,+#_3ea813fe19b7bfd6ff4438af48137479 | p@chr5:145722450..145722456, + |
| 9.76e-45 | FFCP PHASE1:Hg19::chr5:145722450..145722456,+#_3ea813fe19b7bfd6ff4438af48137479 | p@chr5:145722450..145722456, + |
| 9.76e-45 | FFCP PHASE2:Hg19::chr16:53653257..53653264,-#_3ea813fe19b7bfd6ff4438af48137479 | p@chr16:53653257..53653264, - |
| 9.76e-45 | FFCP PHASE2:Hg19::chr9:139096224..139096231,-#_3ea813fe19b7bfd6ff4438af48137479 | p@chr9:139096224..139096231, - |
| 9.76e-45 | FFCP PHASE1:Hg19::chr11:128634589..128634606,+#_3ea813fe19b7bfd6ff4438af48137479 | p14@FLI1 |
| 9.76e-45 | FFCP PHASE1:Hg19::chr9:139096224..139096231,-#_3ea813fe19b7bfd6ff4438af48137479 | p@chr9:139096224..139096231, - |
| 1.22e-44 | FFCP PHASE2:Hg19::chr1:216286476..216286479,-#_ad2d6fbda8ff185270f3b43bee9d7a61 | p@chr1:216286476..216286479, - |
| 1.22e-44 | FFCP PHASE2:Hg19::chr12:54786411..54786421,-#_ad2d6fbda8ff185270f3b43bee9d7a61 | p@chr12:54786411..54786421, - |
| 1.22e-44 | FFCP PHASE2:Hg19::chr5:145724642..145724652,+#_ad2d6fbda8ff185270f3b43bee9d7a61 | p@chr5:145724642..145724652, + |
| 1.22e-44 | FFCP PHASE1:Hg19::chr11:31312513..31312524,-#_ad2d6fbda8ff185270f3b43bee9d7a61 | p@chr11:31312513..31312524, - |
| 1.22e-44 | FFCP PHASE1:Hg19::chr5:145724642..145724652,+#_ad2d6fbda8ff185270f3b43bee9d7a61 | p@chr5:145724642..145724652, + |
| 1.22e-44 | FFCP PHASE1:Hg19::chr12:54786411..54786421,-#_ad2d6fbda8ff185270f3b43bee9d7a61 | p@chr12:54786411..54786421, - |
| 1.22e-44 | FFCP PHASE1:Hg19::chr18:13165683..13165695,-#_ad2d6fbda8ff185270f3b43bee9d7a61 | p@chr18:13165683..13165695, - |
| 1.22e-44 | FFCP PHASE2:Hg19::chr2:3152671..3152679,-#_ad2d6fbda8ff185270f3b43bee9d7a61 | p@chr2:3152671..3152679, - |
| 1.22e-44 | FFCP PHASE2:Hg19::chr20:49727891..49727898,-#_ad2d6fbda8ff185270f3b43bee9d7a61 | p@chr20:49727891..49727898, - |
| 1.22e-44 | FFCP PHASE2:Hg19::chr5:14742023..14742037,-#_ad2d6fbda8ff185270f3b43bee9d7a61 | p@chr5:14742023..14742037, - |
| 1.22e-44 | FFCP PHASE1:Hg19::chr20:49727891..49727898,-#_ad2d6fbda8ff185270f3b43bee9d7a61 | p@chr20:49727891..49727898, - |
| 1.22e-44 | FFCP PHASE1:Hg19::chr2:3152671..3152679,-#_ad2d6fbda8ff185270f3b43bee9d7a61 | p@chr2:3152671..3152679, - |
| 1.22e-44 | FFCP PHASE1:Hg19::chr5:14742023..14742037,-#_ad2d6fbda8ff185270f3b43bee9d7a61 | p@chr5:14742023..14742037, - |
| 1.22e-44 | FFCP PHASE2:Hg19::chr20:31116333..31116338,-#_ad2d6fbda8ff185270f3b43bee9d7a61 | p@chr20:31116333..31116338, - |
| 1.22e-44 | FFCP PHASE2:Hg19::chr18:13165683..13165695,-#_ad2d6fbda8ff185270f3b43bee9d7a61 | p@chr18:13165683..13165695, - |
| 1.22e-44 | FFCP PHASE1:Hg19::chr20:31116333..31116338,-#_ad2d6fbda8ff185270f3b43bee9d7a61 | p@chr20:31116333..31116338, - |
| 1.22e-44 | FFCP PHASE2:Hg19::chr5:145724630..145724641,+#_ad2d6fbda8ff185270f3b43bee9d7a61 | p@chr5:145724630..145724641, + |
| 1.22e-44 | FFCP PHASE2:Hg19::chr11:31312513..31312524,-#_ad2d6fbda8ff185270f3b43bee9d7a61 | p@chr11:31312513..31312524, - |
| 1.22e-44 | FFCP PHASE1:Hg19::chr5:145724630..145724641,+#_ad2d6fbda8ff185270f3b43bee9d7a61 | p@chr5:145724630..145724641, + |
| 1.22e-44 | FFCP PHASE1:Hg19::chr1:216286476..216286479,-#_ad2d6fbda8ff185270f3b43bee9d7a61 | p@chr1:216286476..216286479, - |
| 1.52e-44 | FFCP PHASE1:Hg19::chr3:77121235..77121260,+#_92253cf5cb8efd87756d617baaf7ebf5 | p@chr3:77121235..77121260, + |
| 1.52e-44 | FFCP PHASE2:Hg19::chr3:77121235..77121260,+#_92253cf5cb8efd87756d617baaf7ebf5 | p@chr3:77121235..77121260, + |
| 1.52e-44 | FFCP PHASE2:Hg19::chr7:1327587..1327610,+#_92253cf5cb8efd87756d617baaf7ebf5 | p@chr7:1327587..1327610, + |
| 1.52e-44 | FFCP PHASE1:Hg19::chr7:1327587..1327610,+#_92253cf5cb8efd87756d617baaf7ebf5 | p@chr7:1327587..1327610, + |
| 1.52e-44 | FFCP PHASE2:Hg19::chr7:1327611..1327629,+#_92253cf5cb8efd87756d617baaf7ebf5 | p@chr7:1327611..1327629, + |
| 1.52e-44 | FFCP PHASE1:Hg19::chr7:1327611..1327629,+#_92253cf5cb8efd87756d617baaf7ebf5 | p@chr7:1327611..1327629, + |
| 5.62e-43 | FFCP PHASE2:Hg19::chr2:227008823..227008831,-#_42cd3f79ff29c52e1bccbc5afa96c92a | p@chr2:227008823..227008831, - |
| 5.62e-43 | FFCP PHASE1:Hg19::chr2:227008823..227008831,-#_42cd3f79ff29c52e1bccbc5afa96c92a | p@chr2:227008823..227008831, - |
| 1.33e-42 | FFCP PHASE1:Hg19::chr8:130798890..130798901,-#_b6285b69cf4986ea9f5edb25e9270919 | p3@GSDMC |
| 1.33e-42 | FFCP PHASE2:Hg19::chr8:130798890..130798901,-#_b6285b69cf4986ea9f5edb25e9270919 | p3@GSDMC |
| 7.14e-38 | FFCP PHASE2:Hg19::chr4:87770202..87770211,-#_a78da2c7c907a6d8a20b127b40e407e2 | p5@SLC10A6 |
| 7.14e-38 | FFCP PHASE1:Hg19::chr4:87770202..87770211,-#_a78da2c7c907a6d8a20b127b40e407e2 | p5@SLC10A6 |
| 2.34e-35 | FFCP PHASE2:Hg19::chr2:28785707..28785729,+#_f464c7f70af7d06ca6f01373721e16e6 | p@chr2:28785707..28785729, + |
| 2.34e-35 | FFCP PHASE1:Hg19::chr2:28785707..28785729,+#_f464c7f70af7d06ca6f01373721e16e6 | p@chr2:28785707..28785729, + |
| 4.27e-34 | FFCP PHASE2:Hg19::chr17:39553812..39553817,-#_0b1116d8500af97ebae0d0949c991fcd | p3@KRT31 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr1:3585412..3585417,-#_0b1116d8500af97ebae0d0949c991fcd | p5@ENST00000443034 |
| 4.27e-34 | FFCP PHASE1:Hg19::chr12:52840896..52840905,-#_0b1116d8500af97ebae0d0949c991fcd | p@chr12:52840896..52840905, - |
| 4.27e-34 | FFCP PHASE2:Hg19::chr9:104302091..104302134,+#_0b1116d8500af97ebae0d0949c991fcd | p@chr9:104302091..104302134, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr2:197080808..197080817,-#_0b1116d8500af97ebae0d0949c991fcd | p@chr2:197080808..197080817, - |
| 4.27e-34 | FFCP PHASE1:Hg19::chr16:81253986..81254016,-#_0b1116d8500af97ebae0d0949c991fcd | p10@PKD1L2 |
