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|subset=major_organ;;organ_slim;;uberon_slim;;vertebrate_core
|subset=major_organ;;organ_slim;;uberon_slim;;vertebrate_core
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0005564
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=
|part_of=UBERON:0000990;;UBERON:0002323
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical structure which produces gametes as well as certain sex hormones controlled by the pituitary gonadotropins.[AAO]" xsd:string;;UBPROP:0000001 "The part of the reproductive system that produces and releases eggs (ovary) or sperm (testis).[TAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical structure which produces gametes as well as certain sex hormones controlled by the pituitary gonadotropins.[AAO]" xsd:string;;UBPROP:0000001 "The part of the reproductive system that produces and releases eggs (ovary) or sperm (testis).[TAO]" xsd:string
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 13:27, 27 June 2012

Name:gonad
Definition:"Reproductive organ that produces and releases eggs (ovary) or sperm (testis)." [ISBN:0140512888, Wikipedia:Gonad, ZFA:0000413, ZFIN:curator]
Xrefs:
links:

AAO:0000213
BILA:0000123
BTO:0000534
EMAPA:17383
FBbt:00004858
FMA:18250
GAID:368
HAO:0000379
MA:0002420
MESH:A.05.360.576
ncithesaurus:Gonad
OpenCyc:Mx4rwQvdiZwpEbGdrcN5Y29ycA
SCTID:304623008
TAO:0000413
VHOG:0000397
WBbt:0005175
XAO:0003146

ZFA:0000413
Synonyms: "gonada" EXACT []
Comments:FMA xref is a 'general anatomical term'
Alt_id: UBERON:FBbt_00004858-FMA_18250-MA_0002420-WBbt_0005175-XAO_0003146-ZFA_0000413
Subset: major_organ
organ_slim
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003133(reproductive organ)
develops_from:UBERON:0005564(gonad primordium)
part_of:UBERON:0000990(reproductive system),UBERON:0002323(body cavity)



Children

is a:UBERON:0000473 (testis),UBERON:0000992 (female gonad),UBERON:0009117 (indifferent gonad)
derives from:FF:0011282 (mouse gonad- embryo E13 sample)
part of:UBERON:0004909 (epithelium of gonad)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000991 (gonad), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
6.75e-64FFCP PHASE1:Mm9::chr7:52741629..52741644,+#_99caf2582c0b4aed5a3eff985a1635a5p7@Tulp2
6.75e-64FFCP PHASE2:Mm9::chr7:52741629..52741644,+#_99caf2582c0b4aed5a3eff985a1635a5p7@Tulp2
1.36e-62FFCP PHASE2:Mm9::chr3:40512838..40512859,+#_e520b7855570e7591e70702643c8ce4fp2@Slc25a31
1.36e-62FFCP PHASE1:Mm9::chr3:40512838..40512859,+#_e520b7855570e7591e70702643c8ce4fp2@Slc25a31
1.69e-62FFCP PHASE1:Mm9::chr6:18059038..18059062,-#_315168cbf1644941757d214501692eb3p1@Asz1
1.69e-62FFCP PHASE2:Mm9::chr6:18059038..18059062,-#_315168cbf1644941757d214501692eb3p1@Asz1
2.43e-62FFCP PHASE2:Mm9::chr12:31775417..31775434,-#_3d15f4f8bad301673b7b1691bc39686dp@chr12:31775417..31775434, -
2.43e-62FFCP PHASE1:Mm9::chr12:31775417..31775434,-#_3d15f4f8bad301673b7b1691bc39686dp@chr12:31775417..31775434, -
6.68e-62FFCP PHASE1:Mm9::chr7:109015811..109015852,-#_3b5aaccbffe883066081dc929ac8b891p6@Folr1
6.68e-62FFCP PHASE2:Mm9::chr7:109015811..109015852,-#_3b5aaccbffe883066081dc929ac8b891p6@Folr1
4.74e-60FFCP PHASE1:Mm9::chr15:88813324..88813392,+#_0d37f8f0421295a08c079d067c0c66ecp1@Mov10l1
4.74e-60FFCP PHASE2:Mm9::chr15:88813324..88813392,+#_0d37f8f0421295a08c079d067c0c66ecp1@Mov10l1
1.66e-59FFCP PHASE2:Mm9::chr3:102740016..102740030,-#_4ea8054fc0f4210dcc0f6a31a681d1e7p1@Sycp1
1.66e-59FFCP PHASE1:Mm9::chr3:102740016..102740030,-#_4ea8054fc0f4210dcc0f6a31a681d1e7p1@Sycp1
7.89e-59FFCP PHASE2:Mm9::chr6:18059063..18059084,-#_c9cf2068d39691c83732a9f3093708f7p2@Asz1
7.89e-59FFCP PHASE1:Mm9::chr6:18059063..18059084,-#_c9cf2068d39691c83732a9f3093708f7p2@Asz1
4.05e-58FFCP PHASE2:Hg19::chr8:38008450..38008459,-#_bc60249c04882f588853780f7e537d68p4@STAR
4.05e-58FFCP PHASE1:Hg19::chr8:38008450..38008459,-#_bc60249c04882f588853780f7e537d68p4@STAR
5.06e-58FFCP PHASE2:Mm9::chr15:102277099..102277126,+#_3c2b0ca4bbc7dfd772ed6fbf124b3b62p@chr15:102277099..102277126, +
5.06e-58FFCP PHASE1:Mm9::chr15:102277099..102277126,+#_3c2b0ca4bbc7dfd772ed6fbf124b3b62p@chr15:102277099..102277126, +
5.18e-58FFCP PHASE2:Mm9::chr1:168168856..168168893,-#_4a05efd1d49c534220a4065c7bfebfc8p1@Mael
5.18e-58FFCP PHASE1:Mm9::chr1:168168856..168168893,-#_4a05efd1d49c534220a4065c7bfebfc8p1@Mael
1.46e-57FFCP PHASE2:Mm9::chr2:148660852..148660861,+#_0ba2aa6d042f23fe7fc3df38a9efcc62p3@Cst9
1.46e-57FFCP PHASE1:Mm9::chr2:148660852..148660861,+#_0ba2aa6d042f23fe7fc3df38a9efcc62p3@Cst9
1.46e-57FFCP PHASE2:Mm9::chr4:62295167..62295182,+#_0ba2aa6d042f23fe7fc3df38a9efcc62p22@Rgs3
1.46e-57FFCP PHASE1:Mm9::chr4:62295167..62295182,+#_0ba2aa6d042f23fe7fc3df38a9efcc62p22@Rgs3
1.91e-57FFCP PHASE2:Mm9::chr5:135825867..135825910,-#_cf7288aaf43bf431622f052605bf4617p1@Fkbp6
1.91e-57FFCP PHASE1:Mm9::chr7:149469129..149469146,+#_cf7288aaf43bf431622f052605bf4617p@chr7:149469129..149469146, +
1.91e-57FFCP PHASE1:Mm9::chr5:135825867..135825910,-#_cf7288aaf43bf431622f052605bf4617p1@Fkbp6
1.91e-57FFCP PHASE2:Mm9::chr7:149469129..149469146,+#_cf7288aaf43bf431622f052605bf4617p@chr7:149469129..149469146, +
2.3e-57FFCP PHASE1:Mm9::chr7:147143936..147143939,-#_c48fd97d031df295921f43f7b77c06fap1@Mir202
2.3e-57FFCP PHASE2:Mm9::chr7:147143936..147143939,-#_c48fd97d031df295921f43f7b77c06fap1@Mir202
1.44e-56FFCP PHASE1:Mm9::chr3:95363593..95363613,+#_77f659026345e48b2e0a4d49ea0307fbp1@Hormad1
1.44e-56FFCP PHASE2:Mm9::chr3:95363593..95363613,+#_77f659026345e48b2e0a4d49ea0307fbp1@Hormad1
1.57e-56FFCP PHASE2:Mm9::chr13:24026303..24026308,+#_f693d3a84894dd8625d7f4303b041443p1@Hist1h2aa
1.57e-56FFCP PHASE1:Mm9::chr13:24026303..24026308,+#_f693d3a84894dd8625d7f4303b041443p1@Hist1h2aa
1.84e-56FFCP PHASE1:Hg19::chr1:44584485..44584512,+#_3e81a36e9cfff36d474ce22b0164fe9ep2@KLF17
1.84e-56FFCP PHASE2:Hg19::chr1:44584485..44584512,+#_3e81a36e9cfff36d474ce22b0164fe9ep2@KLF17
1.24e-55FFCP PHASE2:Mm9::chr14:70829178..70829221,-#_bf028d3fcef826aad558651a7dc9a306p1@Piwil2
1.24e-55FFCP PHASE1:Mm9::chr14:70829178..70829221,-#_bf028d3fcef826aad558651a7dc9a306p1@Piwil2
1.82e-55FFCP PHASE2:Mm9::chr9:50369387..50369406,-#_c8d3a80b55cdcdb17b9c623c57096b52p1@Tex12
1.82e-55FFCP PHASE1:Mm9::chr9:50369387..50369406,-#_c8d3a80b55cdcdb17b9c623c57096b52p1@Tex12
1.99e-55FFCP PHASE2:Mm9::chr2:148615085..148615142,+#_dc06bc085a612954171baa1e17b13ccdp1@Cst12
1.99e-55FFCP PHASE1:Mm9::chr2:148615085..148615142,+#_dc06bc085a612954171baa1e17b13ccdp1@Cst12
2.92e-55FFCP PHASE2:Mm9::chr18:47081451..47081490,+#_7e6bbbdb835709a5f996e1308cbb4422p1@Gm949
2.92e-55FFCP PHASE1:Mm9::chr18:47081451..47081490,+#_7e6bbbdb835709a5f996e1308cbb4422p1@Gm949
1.21e-54FFCP PHASE1:Mm9::chr1:36739960..36739999,-#_044437f7d45772e385589a6bec2009d6p1@Fam178b
1.21e-54FFCP PHASE2:Mm9::chr1:36739960..36739999,-#_044437f7d45772e385589a6bec2009d6p1@Fam178b
2.26e-54FFCP PHASE2:Mm9::chr17:50432917..50432931,-#_fc52394e05946040f4cd8199b2bd038fp1@Dazl
2.26e-54FFCP PHASE1:Mm9::chr17:50432917..50432931,-#_fc52394e05946040f4cd8199b2bd038fp1@Dazl
2.54e-54FFCP PHASE1:Mm9::chr7:20074394..20074416,+#_bd810e44725d60bd2ea3cce3fb67de47p1@Exoc3l2
2.54e-54FFCP PHASE2:Mm9::chr7:20074394..20074416,+#_bd810e44725d60bd2ea3cce3fb67de47p1@Exoc3l2
6.89e-54FFCP PHASE2:Mm9::chr7:36322696..36322738,-#_09657f81a0ca46381fd41e343005e538p1@Tdrd12
6.89e-54FFCP PHASE1:Mm9::chr7:36322696..36322738,-#_09657f81a0ca46381fd41e343005e538p1@Tdrd12
7.61e-54FFCP PHASE1:Mm9::chrX:103416484..103416508,-#_a5b9128ecbdf06d020fc665167024433p4@Taf9b
7.61e-54FFCP PHASE2:Mm9::chrX:103416484..103416508,-#_a5b9128ecbdf06d020fc665167024433p4@Taf9b
2.73e-53FFCP PHASE1:Mm9::chr13:64190487..64190500,-#_b3813ef73b74d1f1369207b0bf17600cp3@Hsd17b3
2.73e-53FFCP PHASE2:Mm9::chr13:64190487..64190500,-#_b3813ef73b74d1f1369207b0bf17600cp3@Hsd17b3
2.73e-53FFCP PHASE1:Mm9::chr7:20074432..20074443,+#_b3813ef73b74d1f1369207b0bf17600cp2@Exoc3l2
2.73e-53FFCP PHASE2:Mm9::chr7:20074432..20074443,+#_b3813ef73b74d1f1369207b0bf17600cp2@Exoc3l2
3.37e-53FFCP PHASE2:Mm9::chr19:25580272..25580305,+#_95969ea464922fc57ed7bbb65a15af3ep3@Dmrt1
3.37e-53FFCP PHASE1:Mm9::chr19:25580272..25580305,+#_95969ea464922fc57ed7bbb65a15af3ep3@Dmrt1
4.16e-53FFCP PHASE1:Mm9::chrX:71422591..71422607,+#_863a3b85163798cb2d36967ef338532dp1@Tktl1
4.16e-53FFCP PHASE2:Mm9::chrX:71422591..71422607,+#_863a3b85163798cb2d36967ef338532dp1@Tktl1
4.63e-53FFCP PHASE2:Mm9::chr9:50369425..50369436,-#_b8bec0a872eafeb6b14455f98337d5b0p3@Tex12
4.63e-53FFCP PHASE1:Mm9::chr9:50369425..50369436,-#_b8bec0a872eafeb6b14455f98337d5b0p3@Tex12
6.36e-53FFCP PHASE1:Mm9::chr5:26334211..26334241,+#_843fb1741a75526626202f746ed13f59p@chr5:26334211..26334241, +
6.36e-53FFCP PHASE2:Mm9::chr5:26334211..26334241,+#_843fb1741a75526626202f746ed13f59p@chr5:26334211..26334241, +
8.31e-53FFCP PHASE1:Mm9::chr5:135825912..135825919,-#_a50daf9cf48be7d4ea7581de4ae398b7p2@Fkbp6
8.31e-53FFCP PHASE1:Mm9::chr2:25702844..25702859,-#_a50daf9cf48be7d4ea7581de4ae398b7p1@Sohlh1
8.31e-53FFCP PHASE2:Mm9::chr5:135825912..135825919,-#_a50daf9cf48be7d4ea7581de4ae398b7p2@Fkbp6
8.31e-53FFCP PHASE2:Mm9::chr11:69431224..69431241,-#_a50daf9cf48be7d4ea7581de4ae398b7p@chr11:69431224..69431241, -
8.31e-53FFCP PHASE2:Mm9::chr8:26314366..26314395,-#_a50daf9cf48be7d4ea7581de4ae398b7p@chr8:26314366..26314395, -
8.31e-53FFCP PHASE1:Mm9::chr16:37843615..37843636,-#_a50daf9cf48be7d4ea7581de4ae398b7p@chr16:37843615..37843636, -
8.31e-53FFCP PHASE1:Mm9::chr7:104599810..104599819,+#_a50daf9cf48be7d4ea7581de4ae398b7p3@Kctd14
8.31e-53FFCP PHASE2:Mm9::chr2:25702844..25702859,-#_a50daf9cf48be7d4ea7581de4ae398b7p1@Sohlh1
8.31e-53FFCP PHASE2:Mm9::chr16:37843615..37843636,-#_a50daf9cf48be7d4ea7581de4ae398b7p@chr16:37843615..37843636, -
8.31e-53FFCP PHASE2:Mm9::chr7:104599810..104599819,+#_a50daf9cf48be7d4ea7581de4ae398b7p3@Kctd14
8.31e-53FFCP PHASE2:Mm9::chr14:63940369..63940380,-#_a50daf9cf48be7d4ea7581de4ae398b7p@chr14:63940369..63940380, -
8.31e-53FFCP PHASE1:Mm9::chrX:93160409..93160432,-#_a50daf9cf48be7d4ea7581de4ae398b7p@chrX:93160409..93160432, -
8.31e-53FFCP PHASE1:Mm9::chr11:69431224..69431241,-#_a50daf9cf48be7d4ea7581de4ae398b7p@chr11:69431224..69431241, -
8.31e-53FFCP PHASE1:Mm9::chr8:26314366..26314395,-#_a50daf9cf48be7d4ea7581de4ae398b7p@chr8:26314366..26314395, -
8.31e-53FFCP PHASE2:Mm9::chrX:93160409..93160432,-#_a50daf9cf48be7d4ea7581de4ae398b7p@chrX:93160409..93160432, -
8.31e-53FFCP PHASE1:Mm9::chr14:63940369..63940380,-#_a50daf9cf48be7d4ea7581de4ae398b7p@chr14:63940369..63940380, -
8.63e-53FFCP PHASE2:Mm9::chr3:107746281..107746297,-#_3330acc758c81abc7182eff715f21eb8p5@Gstm6
8.63e-53FFCP PHASE1:Mm9::chr3:107746281..107746297,-#_3330acc758c81abc7182eff715f21eb8p5@Gstm6
1.03e-52FFCP PHASE1:Mm9::chr7:104599826..104599841,+#_0b055f47ee90e4f3e0db051a4d570ee5p2@Kctd14
1.03e-52FFCP PHASE2:Mm9::chr7:104599826..104599841,+#_0b055f47ee90e4f3e0db051a4d570ee5p2@Kctd14
1.84e-52FFCP PHASE2:Mm9::chr7:52741649..52741686,+#_94bbedfbf98cdd873a7cc72bc9e45c16p3@Tulp2
1.84e-52FFCP PHASE1:Mm9::chr7:52741649..52741686,+#_94bbedfbf98cdd873a7cc72bc9e45c16p3@Tulp2
2.15e-52FFCP PHASE1:Mm9::chr17:28644343..28644394,-#_86f792817a71e2b07f377e3f0e27fdcdp3@Fkbp5
2.15e-52FFCP PHASE2:Mm9::chr17:28644343..28644394,-#_86f792817a71e2b07f377e3f0e27fdcdp3@Fkbp5
4.88e-52FFCP PHASE2:Mm9::chr6:120726529..120726551,+#_46d9cd2942977636027b471af26c2befp@chr6:120726529..120726551, +
4.88e-52FFCP PHASE1:Mm9::chr6:120726529..120726551,+#_46d9cd2942977636027b471af26c2befp@chr6:120726529..120726551, +
1.03e-51FFCP PHASE2:Mm9::chr1:182312504..182312531,+#_0223802e4fe605c907b3c6993677a96ep@chr1:182312504..182312531, +
1.03e-51FFCP PHASE1:Mm9::chr1:182312504..182312531,+#_0223802e4fe605c907b3c6993677a96ep@chr1:182312504..182312531, +
1.67e-51FFCP PHASE1:Mm9::chrX:98989738..98989756,-#_ca5b2aae667801792f09384c88af692dp@chrX:98989738..98989756, -
1.67e-51FFCP PHASE2:Mm9::chrX:98989738..98989756,-#_ca5b2aae667801792f09384c88af692dp@chrX:98989738..98989756, -
7.03e-51FFCP PHASE1:Mm9::chr15:3253521..3253569,-#_74f2451273843408feb6b3e7ae1ec967p1@Ccdc152
7.03e-51FFCP PHASE2:Mm9::chr15:3253521..3253569,-#_74f2451273843408feb6b3e7ae1ec967p1@Ccdc152










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical structure which produces gametes as well as certain sex hormones controlled by the pituitary gonadotropins.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "The part of the reproductive system that produces and releases eggs (ovary) or sperm (testis).[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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