Template:Coexpression clusters: Difference between revisions
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== Pathway enrichment analysis {{#info:Analyst: Emmanuel Dimont}} | == Pathway enrichment analysis == | ||
{{#info:Analyst: Emmanuel Dimont}} | |||
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== KEGG pathway enrichment analysis {{#info:The strongest KEGG pathway enrichments <br>Analyst: }} | == KEGG pathway enrichment analysis == | ||
{{#info:The strongest KEGG pathway enrichments <br>Analyst: }} | |||
{{#if: {{#pos:{{{kegg_enrichment}}}|;}} | | {{#if: {{#pos:{{{kegg_enrichment}}}|;}} | | ||
<table class="wikitable sortable"><tr><th>KEGG id</th><th>Pathway name</th><th>P-value</th></tr> | <table class="wikitable sortable"><tr><th>KEGG id</th><th>Pathway name</th><th>P-value</th></tr> | ||
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== GOStat results on Coexpression cluster {{#info:The results for GOStat analysis on co-expressed clusters("All" category). <br>Analyst: Erik Arner}} | == GOStat results on Coexpression cluster == | ||
{{#info:The results for GOStat analysis on co-expressed clusters("All" category). <br>Analyst: Erik Arner}} | |||
{{#if: {{#pos:{{{gostat_on_coexpression_clusters}}}|GO}} | | {{#if: {{#pos:{{{gostat_on_coexpression_clusters}}}|GO}} | | ||
<table class="wikitable mw-collapsible" style="float:left;"><tr><th scope="col"></th></tr><tr><td> | <table class="wikitable mw-collapsible" style="float:left;"><tr><th scope="col"></th></tr><tr><td> | ||
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== Sample enrichment analysis {{#info:The results for enrichment analysis on "All" data of MCL co-expression cluster. That are sorted by ontologies each samples belonging. [https://fantom5-collaboration.gsc.riken.jp/webdav/home/kawaji/120322-FFontology/v6_ontology_term_enrichment_on_MCL_coexp_cluster_120516/ Original Data] <br>Analyst: Hideya Kawaji}} | == Sample enrichment analysis == | ||
{{#info:The results for enrichment analysis on "All" data of MCL co-expression cluster. That are sorted by ontologies each samples belonging. [https://fantom5-collaboration.gsc.riken.jp/webdav/home/kawaji/120322-FFontology/v6_ontology_term_enrichment_on_MCL_coexp_cluster_120516/ Original Data] <br>Analyst: Hideya Kawaji}} | |||
{{#if: {{#pos:{{{ontology_enrichment_celltype}}}|CL}} | | {{#if: {{#pos:{{{ontology_enrichment_celltype}}}|CL}} | | ||
<table class="wikitable mw-collapsible" style="float:left;"><tr><th scope="col">Cell Type (CL)</th></tr><tr><td> | <table class="wikitable mw-collapsible" style="float:left;"><tr><th scope="col">Cell Type (CL)</th></tr><tr><td> | ||
Revision as of 12:36, 31 August 2012
Full id: {{{full_id}}}
Phase1 CAGE Peaks
Pathway enrichment analysis
Analyst: Emmanuel Dimont
GOStat results on Coexpression cluster
The results for GOStat analysis on co-expressed clusters("All" category). <br>Analyst: Erik Arner
Sample enrichment analysis
The results for enrichment analysis on "All" data of MCL co-expression cluster. That are sorted by ontologies each samples belonging. Original Data <br>Analyst: Hideya Kawaji
TFBS overrepresentation
The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <br>Analyst: Michiel de Hoon
