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MacroAPE 1083:7-GCAKYWTTTWT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;0.8;0.8;626.4;172.0!2;0.8;797.6;0.8;0.8!3;797.6;0.8;0.8;0.8!4;54.4;0.8;363.2;380.8!5;158.4;204.0;116.8;320.0!6;316.8;0.8;131.2;351.2!7;164.8...")
 
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2631!10429-106D6;0.0511262!10464-106H5;0.178195!10827-111C8;0.0850517!10789-110H6;0.0764648!10828-111C9;0.125717!10788-110H5;0.0263655!10792-110H9;0.0229193!10765-110E9;0.144571!10829-111D1;0.155455!10830-111D2;0.0654144!10831-111D3;0.496661!10832-111D4;0.322524!10833-111D5;0.0228168!10764-110E8;0.0607957!10770-110F5;0.0375153!10399-106A3;0.0482407!10400-106A4;0.0283743!10405-106A9;0.0235647!10834-111D6;0.0348027!10835-111D7;0.0828596!10836-111D8;0.106422!10837-111D9;0.463535!10699-109G6;0.640655!10802-111A1;0.103686!10796-110I4;0.179068!10010-101C1;0.0649227!10810-111A9;0.903069!10421-106C7;0.140876!10708-109H6;0.00387611!12235-129G3;0.0926516!12236-129G4;0.248699!12237-129G5;0.612981!10167-103B5;0.290892!10151-102I7;0.000462129!10428-106D5;0.00149064!10795-110I3;0.98977!10805-111A4;0.0195183!10052-101G7;0.943161!10189-103D9;0.100801!10589-108D4;0.122537!10425-106D2;0.0535389!10427-106D4;0.048984!10702-109G9;0.826124!10432-106D9;0.0307218!10496-107C1;0.0460019!10718-109I7;0.173763!10011-101C2;0.143411!10053-101G8;0.0320598!10686-109F2;0.0177937!10084-102B3;0.742099!10012-101C3;0.00305113!10085-102B4;0.00123074!10482-107A5;0.00175343!10419-106C5;0.0206383!10080-102A8;0.000219337!10760-110E4;0.790631!10709-109H7;0.0818707!10710-109H8;0.042126!10703-109H1;0.1394!10719-109I8;0.360461!10642-109A3;0.379879!10177-103C6;0.055778!10164-103B2;0.000608744!10173-103C2;0.00115926!10166-103B4;0.00334172!10083-102B2;0.00580022!10188-103D8;0.00425492!10552-107I3;0.000138098!10553-107I4;0.0995367!10013-101C4;0.0446204!10536-107G5;0.296356!10618-108G6;0.300167!10423-106C9;0.450736!10785-110H2;0.010578!12238-129G6;0.0744374!12239-129G7;0.322009!12240-129G8;0.455145!10416-106C2;0.319492!10801-110I9;0.186963!10766-110F1;0.0351133!10824-111C5;0.162218!10825-111C6;0.333045!10826-111C7;0.325491!10454-106G4;0.411441!10409-106B4;0.432292!10638-108I8;0.158859!10636-108I6;0.00430405!10513-107D9;0.0450898!10420-106C6;0.0748454!10082-102B1;0.847697!10014-101C5;0.8884!10070-101I7;0.596542!10452-106G2;0.575846!10453-106G3;0.280616!10449-106F8;0.384575!10042-101F6;0.468113!10069-101I6;0.0215208!10193-103E4;0.531904!10631-108I1;0.00403361!10438-106E6;0.937732!10488-107B2;0.071328!10196-103E7;0.0261173!10071-101I8;0.472713!10071-101I8;0.902686!10041-101F5;0.000178695!10451-106G1;5.59472e-05!10450-106F9;0.705651!10604-108F1;0.186761!10605-108F2;0.113021!10606-108F3;0.100304!10603-108E9;0.252015!10497-107C2;0.0645058!10448-106F7;0.0298937!10643-109A4;0.0380955!10426-106D3;0.05813!10431-106D8;0.0345441!10197-103E8;0.0197116!10443-106F2;0.0980765!10815-111B5;0.130796!10816-111B6;0.0227462!10817-111B7;0.0183722!10015-101C6;0.0170351!10410-106B5;0.481437!10054-101G9;0.904071!10758-110E2;0.00535534!10711-109H9;0.597412!10040-101F4;0.00221539!10470-106I2;0.000529332!10415-106C1;0.0986016!10198-103E9;0.0634174!10614-108G2;0.227602!10612-108F9;0.0585943!10549-107H9;0.209279!10615-108G3;0.0597654!10487-107B1;0.646937!10433-106E1;0.322086!10688-109F4;0.291245!10444-106F3;0.289873!10444-106F3;0.90888!10485-107A8;0.788398!10413-106B8;0.14448!10175-103C4;0.578409!10161-103A8;0.00388149!12131-128D7;0.00519684!10624-108H3;0.342054!10712-109I1;0.650131!10205-103F7;0.0498325!10206-103F8;0.190165!10207-103F9;0.0687119!10050-101G5;0.639917!10051-101G6;0.906719!10016-101C7;0.471349!10046-101G1;0.460417!10778-110G4;0.152658!10633-108I3;0.114129!10818-111B8;0.103119!10819-111B9;0.0130677!10820-111C1;0.00977325!10484-107A7;0.0114902!10808-111A7;0.0442352!10169-103B7;0.479895!10153-102I9;0.000824214!13425-144D5;0.00196289!13433-144E4;0.0799019!13437-144E8;0.0773556!11904-125F5;0.164716!11905-125F6;0.657113!10039-101F3;0.555088!10791-110H8;0.000602265!10017-101C8;0.0475036!10045-101F9;0.400641!10509-107D5;0.0914406!10839-111E2;0.100448!10692-109F8;0.111014!10079-102A7;0.510058!10078-102A6;0.103505!10721-110A1;0.487355!10569-108B2;0.678508!10570-108B3;0.952493!10571-108B4;0.119534!10647-109A8;0.415456!10752-110D5;0.963178!10782-110G8;0.88325!10726-110A6;0.803286!10018-101C9;0.14487!10086-102B5;0.0092067!10182-103D2;0.00628621!10165-103B3;0.00485345!10499-107C4;0.00234618!10408-106B3;0.243201!10019-101D1;0.370348!10068-101I5;0.96771!10075-102A3;0.595848!10077-102A5;0.803709!10727-110A7;0.447057!10775-110G1;0.142721!10412-106B7;0.433691!12231-129F8;0.0787696!12232-129F9;0.646016!12233-129G1;0.80182!12234-129G2;0.725393!10414-106B9;0.45412!10170-103B8;0.428316!10183-103D3;0.00145096!10150-102I6;0.000742694!10174-103C3;0.00083835!10155-103A2;0.027255!10038-101F2;0.00785937!10838-111E1;0.00308666!10759-110E3;0.351308!10514-107E1;0.0430584!10465-106H6;0.0707843!10691-109F7;0.573336!10843-111E6;0.616172!10844-111E7;0.326358!11747-123G1;0.0108644!11748-123G2;0.863739!11749-123G3;0.897562!11750-123G4;0.969391!11751-123G5;0.936018!11840-124H4;0.629241!11752-123G6;0.418988!11753-123G7;0.951631!11754-123G8;0.632273!11755-123G9;0.816111!11756-123H1;0.360576!11833-124G6;0.382482!11760-123H5;0.8007!11836-124G9;0.923812!11758-123H3;0.883459!11835-124G8;0.282103!11762-123H7;0.10941!11838-124H2;0.659578!11757-123H2;0.334473!11759-123H4;0.536653!11761-123H6;0.396056!11842-124H6;0.651263!11837-124H1;0.387329!10568-108B1;0.146513!13230-141I8;0.707844!13231-141I9;0.645142!10696-109G3;0.564209!10493-107B7;0.23049!10494-107B8;0.141123!10850-111F4;0.0268147!10851-111F5;0.575737!10852-111F6;0.0943544!10853-111F7;0.298333!10854-111F8;0.301196!10855-111F9;0.703799!10856-111G1;0.833803!10847-111F1;0.0263588!10846-111E9;0.905132!10848-111F2;0.281927!10845-111E8;0.103939!10857-111G2;0.168223!10858-111G3;0.00410511!10156-103A3;0.0549629!11901-125F2;0.000892879!11902-125F3;0.818234!11903-125F4;0.94035!10689-109F5;0.979606!10648-109A9;0.180564!10784-110H1;0.313208!10744-110C6;0.192369!10772-110F7;0.985532!10474-106I6;0.118251!10600-108E6;0.169661!10684-109E9;0.853305!12226-129F3;0.370857!12227-129F4;0.0711357!10508-107D4;0.0282369!10539-107G8;0.00458625!10607-108F4;0.0431632!10555-107I6;0.873548!10774-110F9;0.00292431!10637-108I7;0.260694!10663-109C6;0.19246!10728-110A8;0.562621!10729-110A9;0.52932!10430-106D7;0.428131!10730-110B1;0.368331!10813-111B3;0.515999!10812-111B2;0.796752!10037-101F1;0.251926!10172-103C1;0.000698131!10163-103B1;0.000390092!10076-102A4;0.00115463!10073-102A1;0.000605377!10036-101E9;0.000224092!10195-103E6;0.000499517!10277-104E7;0.000621937!10434-106E2;0.0537766!10550-107I1;1.42312e-05!10545-107H5;0.0382953!10544-107H4;0.0388887!10704-109H2;0.126929!10510-107D6;0.662978!10558-107I9;0.712669!10020-101D2;0.378151!10732-110B3;0.0661781!10049-101G4;0.622411!10698-109G5;0.991494!10437-106E5;0.0500729!10417-106C3;0.461228!10035-101E8;0.143039!10171-103B9;0.000421688!10157-103A4;0.000687109!10034-101E7;0.000681971!10072-101I9;0.000661828!10199-103F1;8.20197e-05!10200-103F2;0.88216!10697-109G4;0.232622!10723-110A3;0.412676!10179-103C8;0.0847945!10160-103A7;0.010279!10180-103C9;0.00276198!10162-103A9;0.000211208!10021-101D3;0.000339214!10840-111E3;0.943855!10706-109H4;0.505061!10033-101E6;0.056776!10032-101E5;0.000358886!10490-107B4;0.000400533!10439-106E7;0.1742!10022-101D4;0.0426472!10176-103C5;0.101913!10469-106I1;0.00164698!10067-101I4;0.184622!10411-106B6;0.0714165!10471-106I3;0.230747!10030-101E3;0.0930901!10475-106I7;0.00146312!10787-110H4;0.370202!10477-106I9;0.033437!10695-109G2;0.462059!11771-123I7;0.623455!11772-123I8;0.183893!11773-123I9;0.933076!10093-102C3;0.675538!10442-106F1;0.742741!10442-106F1;0.108398!10201-103F3;0.19946!10639-108I9;0.237052!11843-124H7;0.384152!11841-124H5;0.0216437!10693-109F9;0.0857867!10436-106E4;0.0881616!10483-107A6;0.152378!10282-104F3;0.0746255!10023-101D5;0.644154!10066-101I3;0.740015!10065-101I2;0.372711!10800-110I8;0.290795!10610-108F7;0.537188!10841-111E4;0.0775821!10541-107H1;0.938546!10842-111E5;0.924614!10562-108A4;0.0131197!10024-101D6;0.878918!10064-101I1;0.662441!10609-108F6;0.906889!10048-101G3;0.711683!10781-110G7;0.0446713!10181-103D1;0.687718!10159-103A6;0.00509463!10056-101H2;0.00666287!10737-110B8;0.00738633!10025-101D7;0.395776!10044-101F8;0.499346!10424-106D1;0.968849!10463-106H4;0.373046!10616-108G4;0.0728325!10486-107A9;0.460748!10062-101H8;0.122031!10202-103F4;0.309808!10158-103A5;0.847838!10441-106E9;0.0292216!10031-101E4;0.717147!10063-101H9;0.00069593!10063-101H9;0.000166412!11763-123H8;0.342438!11765-123I1;0.705377!11768-123I4;0.757912!10807-111A6;0.969799!10790-110H7;0.602905!10798-110I6;0.451495!10786-110H3;0.160704!10591-108D6;0.0230237!10593-108D8;0.104784!10590-108D5;0.939882!10026-101D8;0.0591188!10096-102C6;0.164091!10168-103B6;0.130612!10154-103A1;0.00466506!10209-103G2;0.00554982!10061-101H7;0.332687!10027-101D9;0.235923!10043-101F7;0.724221!10783-110G9;0.557333!10028-101E1;0.486712!10060-101H6;0.495661!10203-103F5;0.41818!10059-101H5;0.71462!10047-101G2;0.669286!10029-101E2;0.727643!10058-101H4;0.761573!10418-106C4;0.487289!10492-107B6;0.125704!10694-109G1;0.00677459!10797-110I5;0.496116!10057-101H3;0.383498!10100-102D1;0.416318!10055-101H1;0.143447!10204-103F6;0.29683!10191-103E2;0.399056!10563-108A5;0.263291
|name=7-GCAKYWTTTWT,CNhs10646,BestGuess:POU6F1.p2.SwissRegulon.nucfreq(0.706807685234495),T:800.0(20.30%),B:6088.4(13.76%),P:1e-28
|name=7-GCAKYWTTTWT,CNhs10646,BestGuess:POU6F1.p2.SwissRegulon.nucfreq(0.706807685234495),T:800.0(20.30%),B:6088.4(13.76%),P:1e-28
|tomtom_result=DAL82#MA0291.1;2;0.00328742;1.56481;1;7;GCATTTTTTAT;GCGCACATT;-!AFT1#MA0269.1;10;0.00404345;1.92468;1;11;GCATTTTTTAT;CCAATCGGGTGCAATATGTAA;-!SOK2#MA0385.1;4;0.00845775;4.02589;1;7;GCATTTTTTAT;ACCTGCAGGCA;+!PHD1#MA0355.1;4;0.0092357;4.39619;1;6;GCATTTTTTAT;ACCTGCAGCA;+!GSM1#MA0308.1;8;0.0117649;5.60009;1;11;GCATTTTTTAT;TATACTCCGGAGTTTTTTAAT;-!YGR067C#MA0425.1;5;0.0131258;6.2479;1;9;GCATTTTTTAT;ACCCCACTTTTTTG;+!twi#MA0249.1;2;0.0164163;7.81416;1;10;GCATTTTTTAT;TCGCATATGTTG;+
}}
}}

Latest revision as of 12:11, 7 September 2012

Full Name: 7-GCAKYWTTTWT,CNhs10646,BestGuess:POU6F1.p2.SwissRegulon.nucfreq(0.706807685234495),T:800.0(20.30%),B:6088.4(13.76%),P:1e-28

Motif matrix
POACGT
10.80.8626.4172.0
20.8797.60.80.8
3797.60.80.80.8
454.40.8363.2380.8
5158.4204.0116.8320.0
6316.80.8131.2351.2
7164.825.6196.0413.6
867.252.8223.2456.8
9205.6149.6110.4335.2
10428.00.80.8370.4
11214.4178.40.8406.4

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
DAL82#MA0291.120.003287421.5648117GCATTTTTTATGCGCACATT-
AFT1#MA0269.1100.004043451.92468111GCATTTTTTATCCAATCGGGTGCAATATGTAA-
SOK2#MA0385.140.008457754.0258917GCATTTTTTATACCTGCAGGCA+
PHD1#MA0355.140.00923574.3961916GCATTTTTTATACCTGCAGCA+
GSM1#MA0308.180.01176495.60009111GCATTTTTTATTATACTCCGGAGTTTTTTAAT-
YGR067C#MA0425.150.01312586.247919GCATTTTTTATACCCCACTTTTTTG+
twi#MA0249.120.01641637.81416110GCATTTTTTATTCGCATATGTTG+
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