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MacroAPE 1083:SREBP1A HepG2-Srebp1a-ChIP-Seq/Homer: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;81;26;59;1!2;2;1;0;164!3;0;162;5;0!4;162;0;3;2!5;0;149;15;3!6;40;66;51;10!7;0;167;0;0!8;6;155;0;6!9;161;2;3;1!10;1;71;7;88 |macroape_1083_s...")
 
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263!10788-110H5;0.86426!10792-110H9;0.887218!10765-110E9;0.998294!10829-111D1;0.243695!10830-111D2;0.798409!10831-111D3;0.298459!10832-111D4;0.156776!10833-111D5;0.458119!10764-110E8;0.759974!10770-110F5;0.668837!10399-106A3;0.536694!10400-106A4;0.892738!10405-106A9;0.722656!10834-111D6;0.680628!10835-111D7;0.70088!10836-111D8;0.66006!10837-111D9;0.315228!10699-109G6;0.358098!10802-111A1;0.170187!10796-110I4;0.019113!10010-101C1;0.0681446!10810-111A9;0.98176!10421-106C7;0.778741!10708-109H6;0.811454!12235-129G3;0.123248!12236-129G4;0.913239!12237-129G5;0.0113115!10167-103B5;0.895664!10151-102I7;0.823639!10428-106D5;0.390632!10795-110I3;0.433727!10805-111A4;0.221695!10052-101G7;0.0653909!10189-103D9;0.346339!10589-108D4;0.274675!10425-106D2;0.493325!10427-106D4;0.564264!10702-109G9;0.245026!10432-106D9;0.615232!10496-107C1;0.205012!10718-109I7;0.34733!10011-101C2;0.980772!10053-101G8;0.524771!10686-109F2;0.470029!10084-102B3;0.82407!10012-101C3;0.804901!10085-102B4;0.533029!10482-107A5;0.586098!10419-106C5;0.662477!10080-102A8;0.91271!10760-110E4;0.978441!10709-109H7;0.742922!10710-109H8;0.449703!10703-109H1;0.895002!10719-109I8;0.61662!10642-109A3;0.600732!10177-103C6;0.846088!10164-103B2;0.700086!10173-103C2;0.218718!10166-103B4;0.359531!10083-102B2;0.180831!10188-103D8;0.441303!10552-107I3;0.554568!10553-107I4;0.491754!10013-101C4;0.735516!10536-107G5;0.126112!10618-108G6;0.961339!10423-106C9;0.865848!10785-110H2;0.664892!12238-129G6;0.719031!12239-129G7;0.641109!12240-129G8;0.121301!10416-106C2;0.635661!10801-110I9;0.429538!10766-110F1;0.836062!10824-111C5;0.459225!10825-111C6;0.455295!10826-111C7;0.423751!10454-106G4;0.459126!10409-106B4;0.852615!10638-108I8;0.408378!10636-108I6;0.0242445!10513-107D9;0.195829!10420-106C6;0.531276!10082-102B1;0.324844!10014-101C5;0.138869!10070-101I7;0.319774!10452-106G2;0.101873!10453-106G3;0.978353!10449-106F8;0.768082!10042-101F6;0.607632!10069-101I6;0.595952!10193-103E4;0.969397!10631-108I1;0.794711!10438-106E6;0.99278!10488-107B2;0.620726!10196-103E7;0.289149!10071-101I8;0.152948!10071-101I8;0.199332!10041-101F5;0.331512!10451-106G1;0.026945!10450-106F9;0.611404!10604-108F1;0.22322!10605-108F2;0.938826!10606-108F3;0.341817!10603-108E9;0.484414!10497-107C2;0.887214!10448-106F7;0.555818!10643-109A4;0.312774!10426-106D3;0.170237!10431-106D8;0.627762!10197-103E8;0.288032!10443-106F2;0.236145!10815-111B5;0.886119!10816-111B6;0.310694!10817-111B7;0.539815!10015-101C6;0.505505!10410-106B5;0.313495!10054-101G9;0.668856!10758-110E2;0.437161!10711-109H9;0.495178!10040-101F4;0.768766!10470-106I2;0.520745!10415-106C1;0.927768!10198-103E9;0.0794594!10614-108G2;0.868331!10612-108F9;0.640826!10549-107H9;0.916744!10615-108G3;0.989968!10487-107B1;0.950914!10433-106E1;0.737076!10688-109F4;0.200158!10444-106F3;0.437786!10444-106F3;0.370454!10485-107A8;0.354758!10413-106B8;0.791165!10175-103C4;0.286291!10161-103A8;0.476541!12131-128D7;0.6276!10624-108H3;0.962547!10712-109I1;0.536347!10205-103F7;0.598728!10206-103F8;0.68215!10207-103F9;0.328629!10050-101G5;0.310055!10051-101G6;0.808704!10016-101C7;0.416269!10046-101G1;0.324788!10778-110G4;0.218071!10633-108I3;0.919087!10818-111B8;0.452575!10819-111B9;0.619859!10820-111C1;0.682821!10484-107A7;0.678706!10808-111A7;0.761445!10169-103B7;0.60762!10153-102I9;0.799327!13425-144D5;0.381007!13433-144E4;0.592629!13437-144E8;0.668993!11904-125F5;0.488078!11905-125F6;0.273644!10039-101F3;0.254431!10791-110H8;0.580879!10017-101C8;0.190661!10045-101F9;0.0164246!10509-107D5;0.0259278!10839-111E2;0.738906!10692-109F8;0.307372!10079-102A7;0.230367!10078-102A6;0.368354!10721-110A1;0.515831!10569-108B2;0.733755!10570-108B3;0.891093!10571-108B4;0.688027!10647-109A8;0.966065!10752-110D5;0.362855!10782-110G8;0.840446!10726-110A6;0.454848!10018-101C9;0.156844!10086-102B5;0.594485!10182-103D2;0.152381!10165-103B3;0.588659!10499-107C4;0.99273!10408-106B3;0.159103!10019-101D1;0.883022!10068-101I5;0.566183!10075-102A3;0.581006!10077-102A5;0.712121!10727-110A7;0.236695!10775-110G1;0.80154!10412-106B7;0.545965!12231-129F8;0.530133!12232-129F9;0.0822271!12233-129G1;0.262018!12234-129G2;0.0787707!10414-106B9;0.0665054!10170-103B8;0.329924!10183-103D3;0.591316!10150-102I6;0.617131!10174-103C3;0.412924!10155-103A2;0.951602!10038-101F2;0.760179!10838-111E1;0.829089!10759-110E3;0.230135!10514-107E1;0.802796!10465-106H6;0.913011!10691-109F7;0.464946!10843-111E6;0.967979!10844-111E7;0.613822!11747-123G1;0.673099!11748-123G2;0.6071!11749-123G3;0.401175!11750-123G4;0.300786!11751-123G5;0.0991985!11840-124H4;0.49977!11752-123G6;0.345313!11753-123G7;0.0149104!11754-123G8;0.0624701!11755-123G9;0.555934!11756-123H1;0.988669!11833-124G6;0.892958!11760-123H5;0.0764336!11836-124G9;0.857756!11758-123H3;0.667153!11835-124G8;0.383767!11762-123H7;0.916794!11838-124H2;0.318727!11757-123H2;0.994603!11759-123H4;0.933263!11761-123H6;0.603871!11842-124H6;0.0661453!11837-124H1;0.188182!10568-108B1;0.524287!13230-141I8;0.466036!13231-141I9;0.548293!10696-109G3;0.692317!10493-107B7;0.24752!10494-107B8;0.31998!10850-111F4;0.9766!10851-111F5;0.600906!10852-111F6;0.85026!10853-111F7;0.582436!10854-111F8;0.578454!10855-111F9;0.355756!10856-111G1;0.356626!10847-111F1;0.585459!10846-111E9;0.819122!10848-111F2;0.970564!10845-111E8;0.415292!10857-111G2;0.691745!10858-111G3;0.0403934!10156-103A3;0.101898!11901-125F2;0.439292!11902-125F3;0.0735688!11903-125F4;0.0546173!10689-109F5;0.262186!10648-109A9;0.157794!10784-110H1;0.11142!10744-110C6;0.979864!10772-110F7;0.891787!10474-106I6;0.723016!10600-108E6;0.181339!10684-109E9;0.61673!12226-129F3;0.922585!12227-129F4;0.626511!10508-107D4;0.350698!10539-107G8;0.50201!10607-108F4;0.893079!10555-107I6;0.595542!10774-110F9;0.832086!10637-108I7;0.11374!10663-109C6;0.952548!10728-110A8;0.719562!10729-110A9;0.25822!10430-106D7;0.598533!10730-110B1;0.530994!10813-111B3;0.518024!10812-111B2;0.60151!10037-101F1;0.898434!10172-103C1;0.506768!10163-103B1;0.357728!10076-102A4;0.398217!10073-102A1;0.564394!10036-101E9;0.73054!10195-103E6;0.514781!10277-104E7;0.63019!10434-106E2;0.850771!10550-107I1;0.717518!10545-107H5;0.640782!10544-107H4;0.821628!10704-109H2;0.580806!10510-107D6;0.637712!10558-107I9;0.264171!10020-101D2;0.936217!10732-110B3;0.425066!10049-101G4;0.783573!10698-109G5;0.23431!10437-106E5;0.959824!10417-106C3;0.765944!10035-101E8;0.123235!10171-103B9;0.549842!10157-103A4;0.712955!10034-101E7;0.457402!10072-101I9;0.707102!10199-103F1;0.53202!10200-103F2;0.0456674!10697-109G4;0.555304!10723-110A3;0.536392!10179-103C8;0.951131!10160-103A7;0.0857801!10180-103C9;0.0316947!10162-103A9;0.209215!10021-101D3;0.179608!10840-111E3;0.333934!10706-109H4;0.473124!10033-101E6;0.213885!10032-101E5;0.906811!10490-107B4;0.575654!10439-106E7;0.626312!10022-101D4;0.934834!10176-103C5;0.300125!10469-106I1;0.543568!10067-101I4;0.606324!10411-106B6;0.187623!10471-106I3;0.583877!10030-101E3;0.597612!10475-106I7;0.0638308!10787-110H4;0.127975!10477-106I9;0.0614298!10695-109G2;0.206229!11771-123I7;0.530676!11772-123I8;0.785136!11773-123I9;0.111802!10093-102C3;0.0488583!10442-106F1;0.0109738!10442-106F1;0.430066!10201-103F3;0.439696!10639-108I9;0.456965!11843-124H7;0.160187!11841-124H5;0.0765177!10693-109F9;0.591486!10436-106E4;0.724608!10483-107A6;0.5483!10282-104F3;0.239121!10023-101D5;0.296882!10066-101I3;0.628757!10065-101I2;0.31328!10800-110I8;0.806378!10610-108F7;0.860563!10841-111E4;0.391991!10541-107H1;0.189882!10842-111E5;0.329466!10562-108A4;0.951731!10024-101D6;0.712926!10064-101I1;0.576499!10609-108F6;0.0865897!10048-101G3;0.935843!10781-110G7;0.45701!10181-103D1;0.787882!10159-103A6;0.873699!10056-101H2;0.787212!10737-110B8;0.930554!10025-101D7;0.247892!10044-101F8;0.107219!10424-106D1;0.172223!10463-106H4;0.276236!10616-108G4;0.968623!10486-107A9;0.51028!10062-101H8;0.957656!10202-103F4;0.292948!10158-103A5;0.0142268!10441-106E9;0.634892!10031-101E4;0.145158!10063-101H9;0.633844!10063-101H9;0.427938!11763-123H8;0.288674!11765-123I1;0.235705!11768-123I4;0.483938!10807-111A6;0.682435!10790-110H7;0.634185!10798-110I6;0.934817!10786-110H3;0.412364!10591-108D6;0.647989!10593-108D8;0.502933!10590-108D5;0.408612!10026-101D8;0.547844!10096-102C6;0.0346504!10168-103B6;0.14859!10154-103A1;0.96706!10209-103G2;0.741803!10061-101H7;0.734203!10027-101D9;0.0667438!10043-101F7;0.0752932!10783-110G9;0.0400141!10028-101E1;0.935182!10060-101H6;0.107951!10203-103F5;0.383172!10059-101H5;0.861735!10047-101G2;0.435824!10029-101E2;0.196087!10058-101H4;0.868867!10418-106C4;0.370666!10492-107B6;0.768275!10694-109G1;0.0686428!10797-110I5;0.402838!10057-101H3;0.938833!10100-102D1;0.647036!10055-101H1;0.287985!10204-103F6;0.183465!10191-103E2;0.750615!10563-108A5;0.534141
|name=SREBP1A_HepG2-Srebp1a-ChIP-Seq/Homer
|name=SREBP1A_HepG2-Srebp1a-ChIP-Seq/Homer
|tomtom_result=hkb#MA0450.1;-1;0.00179762;0.855669;1;9;ATCACCCCAT;TCACGCCCC;-!ABF1#MA0265.1;2;0.00624251;2.97144;1;10;ATCACCCCAT;ATATCACTTTATACGA;-!ADR1#MA0268.1;-3;0.00677101;3.223;1;7;ATCACCCCAT;ACCCCAC;+!CREB1#MA0018.2;-1;0.0071375;3.39745;1;8;ATCACCCCAT;TGACGTCA;+!GCN4#MA0303.1;10;0.0112518;5.35586;1;10;ATCACCCCAT;TGAAGTATGACTCATCCCTTG;-!HLF#MA0043.1;1;0.0115747;5.50956;1;10;ATCACCCCAT;GGTTACGCAATT;+!usp#MA0016.1;2;0.0116984;5.56844;1;8;ATCACCCCAT;CCGTGACCCC;-!CREB1#MA0018.2;3;0.0139691;6.64931;1;9;ATCACCCCAT;GACGTCACCAGG;-!UGA3#MA0410.1;-1;0.0147097;7.00183;1;8;ATCACCCCAT;TCCCGCCG;-!z#MA0255.1;1;0.0161661;7.69506;1;9;ATCACCCCAT;AATCACTCAA;-!CST6#MA0286.1;-1;0.0168035;7.99848;1;9;ATCACCCCAT;TTACGTCAT;-!Arnt::Ahr#MA0006.1;-2;0.0181068;8.61884;1;6;ATCACCCCAT;CACGCA;-!AFT2#MA0270.1;0;0.0184779;8.79546;1;8;ATCACCCCAT;CACACCCC;+!STB5#MA0392.1;-1;0.0193229;9.19769;1;8;ATCACCCCAT;TAACACCG;-
}}
}}

Latest revision as of 12:17, 7 September 2012

Full Name: SREBP1A_HepG2-Srebp1a-ChIP-Seq/Homer

Motif matrix
POACGT
18126591
2210164
3016250
4162032
50149153
640665110
7016700
8615506
9161231
10171788

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
hkb#MA0450.1-10.001797620.85566919ATCACCCCATTCACGCCCC-
ABF1#MA0265.120.006242512.97144110ATCACCCCATATATCACTTTATACGA-
ADR1#MA0268.1-30.006771013.22317ATCACCCCATACCCCAC+
CREB1#MA0018.2-10.00713753.3974518ATCACCCCATTGACGTCA+
GCN4#MA0303.1100.01125185.35586110ATCACCCCATTGAAGTATGACTCATCCCTTG-
HLF#MA0043.110.01157475.50956110ATCACCCCATGGTTACGCAATT+
usp#MA0016.120.01169845.5684418ATCACCCCATCCGTGACCCC-
CREB1#MA0018.230.01396916.6493119ATCACCCCATGACGTCACCAGG-
UGA3#MA0410.1-10.01470977.0018318ATCACCCCATTCCCGCCG-
z#MA0255.110.01616617.6950619ATCACCCCATAATCACTCAA-
CST6#MA0286.1-10.01680357.9984819ATCACCCCATTTACGTCAT-
Arnt::Ahr#MA0006.1-20.01810688.6188416ATCACCCCATCACGCA-
AFT2#MA0270.100.01847798.7954618ATCACCCCATCACACCCC+
STB5#MA0392.1-10.01932299.1976918ATCACCCCATTAACACCG-
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