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MacroAPE 1083:NRF1 MCF7-NRF1-ChIP-Seq/Homer: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;373;2996;941;468!2;248;812;506;3212!3;172;29;4563;14!4;191;4472;86;29!5;81;19;4664;14!6;24;4692;33;29!7;3502;803;325;148!8;196;368;798;3416!...")
 
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B9;0.0147069!10170-103B8;0.0485139!10183-103D3;0.228847!10150-102I6;0.607206!10174-103C3;0.573587!10155-103A2;0.107227!10038-101F2;0.0215231!10838-111E1;0.00749347!10759-110E3;0.204722!10514-107E1;0.0698731!10465-106H6;1.51368e-06!10691-109F7;0.00528263!10843-111E6;0.0787849!10844-111E7;0.0131516!11747-123G1;0.0493557!11748-123G2;0.465083!11749-123G3;0.226393!11750-123G4;0.0967775!11751-123G5;0.560965!11840-124H4;0.317527!11752-123G6;0.371902!11753-123G7;0.17998!11754-123G8;0.0870695!11755-123G9;0.72312!11756-123H1;0.396987!11833-124G6;0.735072!11760-123H5;0.044161!11836-124G9;0.563088!11758-123H3;0.989502!11835-124G8;0.719752!11762-123H7;0.0137538!11838-124H2;0.143373!11757-123H2;0.17292!11759-123H4;0.0211793!11761-123H6;0.388794!11842-124H6;0.134508!11837-124H1;0.129325!10568-108B1;0.0103057!13230-141I8;0.0272754!13231-141I9;0.150715!10696-109G3;0.134867!10493-107B7;0.193864!10494-107B8;0.0929486!10850-111F4;0.530975!10851-111F5;0.0277026!10852-111F6;0.35177!10853-111F7;0.351923!10854-111F8;0.392814!10855-111F9;0.000662142!10856-111G1;0.828189!10847-111F1;0.91571!10846-111E9;0.995482!10848-111F2;0.775296!10845-111E8;7.35854e-05!10857-111G2;3.87668e-10!10858-111G3;2.17468e-09!10156-103A3;0.0632602!11901-125F2;0.594542!11902-125F3;0.0149424!11903-125F4;0.292571!10689-109F5;0.0576971!10648-109A9;0.000368932!10784-110H1;0.0237995!10744-110C6;0.581769!10772-110F7;0.00211741!10474-106I6;2.92655e-08!10600-108E6;5.65201e-09!10684-109E9;0.576465!12226-129F3;0.371475!12227-129F4;0.0156861!10508-107D4;1.1922e-13!10539-107G8;0.0526217!10607-108F4;0.00372073!10555-107I6;0.000830824!10774-110F9;0.0489597!10637-108I7;1.60476e-10!10663-109C6;0.00638168!10728-110A8;0.00488476!10729-110A9;0.026571!10430-106D7;0.00279079!10730-110B1;0.0236865!10813-111B3;1.06081e-05!10812-111B2;0.00275038!10037-101F1;0.151277!10172-103C1;0.783486!10163-103B1;0.261657!10076-102A4;0.281999!10073-102A1;0.998007!10036-101E9;0.590212!10195-103E6;0.615182!10277-104E7;0.929931!10434-106E2;0.0527398!10550-107I1;0.0274627!10545-107H5;0.00366051!10544-107H4;0.227356!10704-109H2;0.453821!10510-107D6;0.480823!10558-107I9;0.494622!10020-101D2;0.0346076!10732-110B3;6.33515e-08!10049-101G4;0.565578!10698-109G5;0.00649495!10437-106E5;0.00746731!10417-106C3;0.000196938!10035-101E8;0.0693292!10171-103B9;0.941042!10157-103A4;0.434663!10034-101E7;0.753398!10072-101I9;0.794486!10199-103F1;0.512927!10200-103F2;0.00108826!10697-109G4;1.75316e-06!10723-110A3;0.000360761!10179-103C8;0.000585158!10160-103A7;0.992005!10180-103C9;0.250548!10162-103A9;0.0186!10021-101D3;0.127254!10840-111E3;4.75516e-05!10706-109H4;7.95241e-05!10033-101E6;0.122569!10032-101E5;0.965325!10490-107B4;0.829292!10439-106E7;1.46822e-06!10022-101D4;1.49975e-06!10176-103C5;1.12506e-07!10469-106I1;0.641255!10067-101I4;0.387193!10411-106B6;3.35139e-11!10471-106I3;0.155245!10030-101E3;0.00160738!10475-106I7;8.47549e-07!10787-110H4;0.00202224!10477-106I9;1.09456e-10!10695-109G2;0.164343!11771-123I7;8.17378e-10!11772-123I8;0.971011!11773-123I9;0.0576015!10093-102C3;0.00015752!10442-106F1;0.0806197!10442-106F1;1.2459e-05!10201-103F3;3.57224e-05!10639-108I9;4.59059e-07!11843-124H7;4.84752e-05!11841-124H5;0.209528!10693-109F9;2.23998e-15!10436-106E4;0.00362029!10483-107A6;0.0153367!10282-104F3;0.0277189!10023-101D5;0.217253!10066-101I3;9.58674e-08!10065-101I2;0.000153554!10800-110I8;0.000267854!10610-108F7;0.0148019!10841-111E4;0.0403078!10541-107H1;1.83333e-07!10842-111E5;0.119701!10562-108A4;0.00310039!10024-101D6;0.073634!10064-101I1;1.64294e-05!10609-108F6;0.000446262!10048-101G3;0.00163009!10781-110G7;5.71725e-15!10181-103D1;0.706219!10159-103A6;0.0111229!10056-101H2;0.0810295!10737-110B8;0.000132593!10025-101D7;0.000840309!10044-101F8;4.8386e-06!10424-106D1;4.35506e-10!10463-106H4;6.50634e-07!10616-108G4;0.49477!10486-107A9;0.631995!10062-101H8;1.4423e-08!10202-103F4;5.30137e-17!10158-103A5;0.000155827!10441-106E9;0.0620671!10031-101E4;0.0156743!10063-101H9;0.468728!10063-101H9;0.692916!11763-123H8;0.000181477!11765-123I1;0.0156468!11768-123I4;0.0235341!10807-111A6;0.165884!10790-110H7;0.00632357!10798-110I6;1.44567e-05!10786-110H3;0.859843!10591-108D6;0.172949!10593-108D8;0.00569951!10590-108D5;0.050699!10026-101D8;6.91594e-05!10096-102C6;0.811722!10168-103B6;1.19278e-05!10154-103A1;0.754331!10209-103G2;0.187147!10061-101H7;0.000866754!10027-101D9;2.52766e-05!10043-101F7;0.244067!10783-110G9;0.0418478!10028-101E1;0.834118!10060-101H6;0.000346373!10203-103F5;3.59372e-09!10059-101H5;0.000979976!10047-101G2;0.00766912!10029-101E2;8.51231e-05!10058-101H4;2.78724e-05!10418-106C4;5.36915e-08!10492-107B6;0.587251!10694-109G1;0.00495443!10797-110I5;4.21895e-05!10057-101H3;0.156763!10100-102D1;9.74884e-05!10055-101H1;2.54583e-06!10204-103F6;3.02438e-06!10191-103E2;2.86859e-12!10563-108A5;3.51726e-08
|name=NRF1_MCF7-NRF1-ChIP-Seq/Homer
|name=NRF1_MCF7-NRF1-ChIP-Seq/Homer
|tomtom_result=INO2#MA0321.1;-1;0.00437994;2.08485;1;9;CTGCGCATGCGC;TTCACATGC;-!INO4#MA0322.1;-1;0.0055087;2.62214;1;9;CTGCGCATGCGC;TTCACATGC;-!RTG3#MA0376.1;2;0.0101175;4.81594;1;12;CTGCGCATGCGC;GACTAAGCACGTGCTAATAT;-!Egr1#MA0162.1;-1;0.0134428;6.39876;1;11;CTGCGCATGCGC;TGCGTGGGCGT;+!twi#MA0249.1;0;0.0140531;6.68929;1;12;CTGCGCATGCGC;CAACATATGCGA;-!TBS1#MA0404.1;-3;0.0143434;6.82748;1;8;CTGCGCATGCGC;CGGATCCG;+!TP53#MA0106.1;0;0.0159006;7.56869;1;12;CTGCGCATGCGC;CCGGACATGCCCGGGCATGT;+!STP3#MA0396.1;-1;0.0161332;7.6794;1;9;CTGCGCATGCGC;TGCGCTAGC;-!NHLH1#MA0048.1;0;0.0201887;9.60983;1;12;CTGCGCATGCGC;ACGCAGCTGCGC;-
}}
}}

Latest revision as of 13:02, 7 September 2012

Full Name: NRF1_MCF7-NRF1-ChIP-Seq/Homer

Motif matrix
POACGT
13732996941468
22488125063212
317229456314
419144728629
58119466414
62446923329
73502803325148
81963687983416
92462465933
1053458219124
1138964405239
1229443443272

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
INO2#MA0321.1-10.004379942.0848519CTGCGCATGCGCTTCACATGC-
INO4#MA0322.1-10.00550872.6221419CTGCGCATGCGCTTCACATGC-
RTG3#MA0376.120.01011754.81594112CTGCGCATGCGCGACTAAGCACGTGCTAATAT-
Egr1#MA0162.1-10.01344286.39876111CTGCGCATGCGCTGCGTGGGCGT+
twi#MA0249.100.01405316.68929112CTGCGCATGCGCCAACATATGCGA-
TBS1#MA0404.1-30.01434346.8274818CTGCGCATGCGCCGGATCCG+
TP53#MA0106.100.01590067.56869112CTGCGCATGCGCCCGGACATGCCCGGGCATGT+
STP3#MA0396.1-10.01613327.679419CTGCGCATGCGCTGCGCTAGC-
NHLH1#MA0048.100.02018879.60983112CTGCGCATGCGCACGCAGCTGCGC-
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