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MacroAPE 1083:GGACAAG,motif387: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;113.993;34.463;2499.893;2.651!2;429.462;220.033;1998.854;2.651!3;2216.236;262.449;169.664;2.651!4;490.435;2078.384;2.651;79.53!5;2075.733;12...")
 
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10788-110H5;0.982977!10792-110H9;0.775681!10765-110E9;0.51102!10829-111D1;0.596775!10830-111D2;0.702822!10831-111D3;0.488745!10832-111D4;0.810338!10833-111D5;0.559578!10764-110E8;0.527957!10770-110F5;0.968769!10399-106A3;0.917904!10400-106A4;0.555675!10405-106A9;0.620572!10834-111D6;0.551286!10835-111D7;0.694399!10836-111D8;0.967728!10837-111D9;0.643898!10699-109G6;0.740787!10802-111A1;0.948207!10796-110I4;0.514263!10010-101C1;0.338507!10810-111A9;0.824607!10421-106C7;0.720334!10708-109H6;0.748557!12235-129G3;0.485951!12236-129G4;0.77599!12237-129G5;0.523221!10167-103B5;0.981386!10151-102I7;0.511062!10428-106D5;0.495672!10795-110I3;0.538531!10805-111A4;0.86658!10052-101G7;0.8479!10189-103D9;0.82559!10589-108D4;0.633649!10425-106D2;0.845597!10427-106D4;0.108849!10702-109G9;0.415794!10432-106D9;0.599439!10496-107C1;0.795632!10718-109I7;0.805102!10011-101C2;0.752705!10053-101G8;0.88812!10686-109F2;0.369648!10084-102B3;0.951077!10012-101C3;0.603718!10085-102B4;0.540531!10482-107A5;0.67208!10419-106C5;0.923842!10080-102A8;0.400219!10760-110E4;0.682513!10709-109H7;0.229259!10710-109H8;0.765367!10703-109H1;0.983266!10719-109I8;0.719999!10642-109A3;0.753328!10177-103C6;0.458455!10164-103B2;0.663249!10173-103C2;0.606757!10166-103B4;0.574364!10083-102B2;0.511483!10188-103D8;0.575521!10552-107I3;0.621208!10553-107I4;0.570775!10013-101C4;0.67099!10536-107G5;0.724237!10618-108G6;0.300389!10423-106C9;0.920598!10785-110H2;0.835086!12238-129G6;0.571585!12239-129G7;0.917216!12240-129G8;0.477979!10416-106C2;0.732374!10801-110I9;0.904128!10766-110F1;0.914398!10824-111C5;0.519592!10825-111C6;0.637369!10826-111C7;0.594217!10454-106G4;0.525367!10409-106B4;0.676431!10638-108I8;0.494826!10636-108I6;0.633142!10513-107D9;0.489303!10420-106C6;0.955051!10082-102B1;0.897574!10014-101C5;0.870091!10070-101I7;0.956637!10452-106G2;0.839596!10453-106G3;0.556298!10449-106F8;0.823139!10042-101F6;0.765172!10069-101I6;0.752601!10193-103E4;0.43976!10631-108I1;0.633493!10438-106E6;0.881734!10488-107B2;0.60542!10196-103E7;0.945741!10071-101I8;0.715316!10071-101I8;0.903009!10041-101F5;0.543872!10451-106G1;0.844882!10450-106F9;0.720058!10604-108F1;0.606065!10605-108F2;0.504217!10606-108F3;0.949297!10603-108E9;0.568408!10497-107C2;0.495309!10448-106F7;0.884992!10643-109A4;0.790431!10426-106D3;0.778795!10431-106D8;0.804518!10197-103E8;0.820067!10443-106F2;0.539421!10815-111B5;0.554505!10816-111B6;0.660335!10817-111B7;0.682274!10015-101C6;0.627312!10410-106B5;0.432456!10054-101G9;0.78527!10758-110E2;0.91903!10711-109H9;0.923807!10040-101F4;0.89768!10470-106I2;0.495848!10415-106C1;0.678483!10198-103E9;0.507596!10614-108G2;0.851527!10612-108F9;0.890355!10549-107H9;0.589932!10615-108G3;0.805756!10487-107B1;0.254969!10433-106E1;0.754076!10688-109F4;0.719761!10444-106F3;0.377324!10444-106F3;0.527938!10485-107A8;0.70764!10413-106B8;0.652404!10175-103C4;0.665915!10161-103A8;0.716785!12131-128D7;0.662522!10624-108H3;0.510489!10712-109I1;0.832675!10205-103F7;0.702394!10206-103F8;0.904812!10207-103F9;0.550504!10050-101G5;0.766388!10051-101G6;0.252776!10016-101C7;0.309034!10046-101G1;0.537175!10778-110G4;0.710326!10633-108I3;0.694786!10818-111B8;0.521471!10819-111B9;0.939589!10820-111C1;0.953254!10484-107A7;0.975317!10808-111A7;0.506517!10169-103B7;0.744802!10153-102I9;0.542251!13425-144D5;0.504273!13433-144E4;0.683967!13437-144E8;0.622835!11904-125F5;0.574189!11905-125F6;0.260669!10039-101F3;0.204581!10791-110H8;0.522583!10017-101C8;0.480294!10045-101F9;0.533065!10509-107D5;0.898733!10839-111E2;0.732738!10692-109F8;0.274676!10079-102A7;0.825088!10078-102A6;0.715459!10721-110A1;0.356927!10569-108B2;0.587797!10570-108B3;0.459152!10571-108B4;0.615211!10647-109A8;0.405486!10752-110D5;0.677047!10782-110G8;0.655268!10726-110A6;0.0401652!10018-101C9;0.422563!10086-102B5;0.733657!10182-103D2;0.916462!10165-103B3;0.623365!10499-107C4;0.545915!10408-106B3;0.863533!10019-101D1;0.639013!10068-101I5;0.600452!10075-102A3;0.707646!10077-102A5;0.844409!10727-110A7;0.825799!10775-110G1;0.714171!10412-106B7;0.733395!12231-129F8;0.64253!12232-129F9;0.968684!12233-129G1;0.92899!12234-129G2;0.861921!10414-106B9;0.57657!10170-103B8;0.923099!10183-103D3;0.445476!10150-102I6;0.539202!10174-103C3;0.486281!10155-103A2;0.852077!10038-101F2;0.638026!10838-111E1;0.680049!10759-110E3;0.709746!10514-107E1;0.63286!10465-106H6;0.172542!10691-109F7;0.161692!10843-111E6;0.616624!10844-111E7;0.62812!11747-123G1;0.695376!11748-123G2;0.202015!11749-123G3;0.16558!11750-123G4;0.589174!11751-123G5;0.233887!11840-124H4;0.659407!11752-123G6;0.738914!11753-123G7;0.963069!11754-123G8;0.8423!11755-123G9;0.260824!11756-123H1;0.86573!11833-124G6;0.985296!11760-123H5;0.865056!11836-124G9;0.806738!11758-123H3;0.954299!11835-124G8;0.413578!11762-123H7;0.461998!11838-124H2;0.778902!11757-123H2;0.658965!11759-123H4;0.732159!11761-123H6;0.411477!11842-124H6;0.926891!11837-124H1;0.586252!10568-108B1;0.656958!13230-141I8;0.461369!13231-141I9;0.302132!10696-109G3;0.329557!10493-107B7;0.700699!10494-107B8;0.747784!10850-111F4;0.697686!10851-111F5;0.762487!10852-111F6;0.0678947!10853-111F7;0.681076!10854-111F8;0.848421!10855-111F9;0.85479!10856-111G1;0.614556!10847-111F1;0.808118!10846-111E9;0.876568!10848-111F2;0.894795!10845-111E8;0.740138!10857-111G2;0.986113!10858-111G3;0.527103!10156-103A3;0.286641!11901-125F2;0.465222!11902-125F3;0.671301!11903-125F4;0.632997!10689-109F5;0.732783!10648-109A9;0.159244!10784-110H1;0.350221!10744-110C6;0.814997!10772-110F7;0.515518!10474-106I6;0.874656!10600-108E6;0.663455!10684-109E9;0.739559!12226-129F3;0.184466!12227-129F4;0.656557!10508-107D4;0.521952!10539-107G8;0.272466!10607-108F4;0.773902!10555-107I6;0.882733!10774-110F9;0.222052!10637-108I7;0.906796!10663-109C6;0.756614!10728-110A8;0.776632!10729-110A9;0.558766!10430-106D7;0.45316!10730-110B1;0.519142!10813-111B3;0.473176!10812-111B2;0.856383!10037-101F1;0.148924!10172-103C1;0.604245!10163-103B1;0.540519!10076-102A4;0.484541!10073-102A1;0.553786!10036-101E9;0.472634!10195-103E6;0.527398!10277-104E7;0.599823!10434-106E2;0.817352!10550-107I1;0.630272!10545-107H5;0.416991!10544-107H4;0.273905!10704-109H2;0.821829!10510-107D6;0.35155!10558-107I9;0.974106!10020-101D2;0.158553!10732-110B3;0.746752!10049-101G4;0.322915!10698-109G5;0.429902!10437-106E5;0.939569!10417-106C3;0.934406!10035-101E8;0.963639!10171-103B9;0.514742!10157-103A4;0.545771!10034-101E7;0.482021!10072-101I9;0.505101!10199-103F1;0.544653!10200-103F2;0.738226!10697-109G4;0.530004!10723-110A3;0.447496!10179-103C8;0.393824!10160-103A7;0.474707!10180-103C9;0.313169!10162-103A9;0.682843!10021-101D3;0.403456!10840-111E3;0.575695!10706-109H4;0.873177!10033-101E6;0.530499!10032-101E5;0.547665!10490-107B4;0.531288!10439-106E7;0.492292!10022-101D4;0.64427!10176-103C5;0.859734!10469-106I1;0.565632!10067-101I4;0.789325!10411-106B6;0.928234!10471-106I3;0.593719!10030-101E3;0.987842!10475-106I7;0.941272!10787-110H4;0.451118!10477-106I9;0.19198!10695-109G2;0.91802!11771-123I7;0.934891!11772-123I8;0.472439!11773-123I9;0.170299!10093-102C3;0.867721!10442-106F1;0.782909!10442-106F1;0.814645!10201-103F3;0.772067!10639-108I9;0.627628!11843-124H7;0.906749!11841-124H5;0.791295!10693-109F9;0.855014!10436-106E4;0.76643!10483-107A6;0.966215!10282-104F3;0.655872!10023-101D5;0.284285!10066-101I3;0.41668!10065-101I2;0.43469!10800-110I8;0.455802!10610-108F7;0.993863!10841-111E4;0.483356!10541-107H1;0.827805!10842-111E5;0.571187!10562-108A4;0.280897!10024-101D6;0.406525!10064-101I1;0.966184!10609-108F6;0.98244!10048-101G3;0.851782!10781-110G7;0.737893!10181-103D1;0.431!10159-103A6;0.730273!10056-101H2;0.669572!10737-110B8;0.932318!10025-101D7;0.859633!10044-101F8;0.744952!10424-106D1;0.933635!10463-106H4;0.702442!10616-108G4;0.704381!10486-107A9;0.460681!10062-101H8;0.898655!10202-103F4;0.914322!10158-103A5;0.9624!10441-106E9;0.833716!10031-101E4;0.94059!10063-101H9;0.555841!10063-101H9;0.534673!11763-123H8;0.961227!11765-123I1;0.157749!11768-123I4;0.374978!10807-111A6;0.183084!10790-110H7;0.229843!10798-110I6;0.555442!10786-110H3;0.951165!10591-108D6;0.799884!10593-108D8;0.854185!10590-108D5;0.77231!10026-101D8;0.731502!10096-102C6;0.446415!10168-103B6;0.617807!10154-103A1;0.612924!10209-103G2;0.627463!10061-101H7;0.473493!10027-101D9;0.497537!10043-101F7;0.52702!10783-110G9;0.486129!10028-101E1;0.722287!10060-101H6;0.427623!10203-103F5;0.662327!10059-101H5;0.360107!10047-101G2;0.445454!10029-101E2;0.788811!10058-101H4;0.610577!10418-106C4;0.567909!10492-107B6;0.935514!10694-109G1;0.78778!10797-110I5;0.977597!10057-101H3;0.928487!10100-102D1;0.228501!10055-101H1;0.903822!10204-103F6;0.696899!10191-103E2;0.886698!10563-108A5;0.90658
|name=GGACAAG,motif387,CNhs12625,T:2651.0(59.56%),B:38863.9(50.36%),P:1e-34
|name=GGACAAG,motif387,CNhs12625,T:2651.0(59.56%),B:38863.9(50.36%),P:1e-34
|tomtom_result=NFATC2#MA0152.1;1;0.0109431;5.20891;1;6;GGACAAG;TGGAAAA;-!TP53#MA0106.1;2;0.0132475;6.3058;1;7;GGACAAG;CCGGACATGCCCGGGCATGT;+!ttk#MA0460.1;2;0.0134882;6.42037;1;7;GGACAAG;AAGGATAAT;+!RIM101#MA0368.1;0;0.0145699;6.93528;1;7;GGACAAG;CGCCAAG;+!Esrrb#MA0141.1;1;0.0181707;8.64924;1;7;GGACAAG;AGCTCAAGGTCA;+
}}
}}

Latest revision as of 13:18, 7 September 2012

Full Name: GGACAAG,motif387,CNhs12625,T:2651.0(59.56%),B:38863.9(50.36%),P:1e-34

Motif matrix
POACGT
1113.99334.4632499.8932.651
2429.462220.0331998.8542.651
32216.236262.449169.6642.651
4490.4352078.3842.65179.53
52075.733127.248140.503307.516
62523.7522.6512.651121.946
72.65179.532507.84660.973

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
NFATC2#MA0152.110.01094315.2089116GGACAAGTGGAAAA-
TP53#MA0106.120.01324756.305817GGACAAGCCGGACATGCCCGGGCATGT+
ttk#MA0460.120.01348826.4203717GGACAAGAAGGATAAT+
RIM101#MA0368.100.01456996.9352817GGACAAGCGCCAAG+
Esrrb#MA0141.110.01817078.6492417GGACAAGAGCTCAAGGTCA+
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