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MacroAPE 1083:3-GCGTTTGAAT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;64.608;86.817;480.522;41.053!2;69.992;454.948;78.068;69.992!3;93.547;81.433;401.108;96.912!4;53.84;84.125;54.513;480.522!5;46.437;72.011;70....")
 
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6541!10809-111A8;0.351346!10597-108E3;9.1873e-05!10717-109I6;0.0450107!10455-106G5;0.0277046!10534-107G3;0.0166835!10429-106D6;0.00366849!10464-106H5;0.0182339!10827-111C8;0.0427695!10789-110H6;0.430661!10828-111C9;0.0802712!10788-110H5;0.0717495!10792-110H9;0.0829808!10765-110E9;0.282809!10829-111D1;0.0262238!10830-111D2;0.0170257!10831-111D3;0.155983!10832-111D4;0.0255007!10833-111D5;0.0153369!10764-110E8;0.0638826!10770-110F5;0.0157914!10399-106A3;0.20569!10400-106A4;0.0055131!10405-106A9;0.00551581!10834-111D6;0.000855712!10835-111D7;0.0301848!10836-111D8;0.0506044!10837-111D9;0.00726506!10699-109G6;0.0225956!10802-111A1;0.106508!10796-110I4;0.0512132!10010-101C1;0.169672!10810-111A9;0.0287536!10421-106C7;0.0414554!10708-109H6;0.227059!12235-129G3;0.0565002!12236-129G4;0.00324157!12237-129G5;0.18613!10167-103B5;0.00170499!10151-102I7;0.663627!10428-106D5;0.927128!10795-110I3;0.512451!10805-111A4;0.00446687!10052-101G7;0.252626!10189-103D9;0.237262!10589-108D4;0.733485!10425-106D2;0.803275!10427-106D4;0.00900182!10702-109G9;0.0928436!10432-106D9;0.0867484!10496-107C1;0.0105551!10718-109I7;0.417472!10011-101C2;0.0215057!10053-101G8;0.0132279!10686-109F2;0.892347!10084-102B3;0.53788!10012-101C3;0.857558!10085-102B4;0.879844!10482-107A5;0.279695!10419-106C5;0.565254!10080-102A8;0.835335!10760-110E4;0.244!10709-109H7;0.00987831!10710-109H8;0.200528!10703-109H1;0.503764!10719-109I8;0.00495028!10642-109A3;0.0032671!10177-103C6;4.69834e-06!10164-103B2;0.964305!10173-103C2;0.720659!10166-103B4;0.869556!10083-102B2;0.978557!10188-103D8;0.941353!10552-107I3;0.720532!10553-107I4;0.939341!10013-101C4;0.469442!10536-107G5;0.0407647!10618-108G6;0.379!10423-106C9;0.781199!10785-110H2;0.52598!12238-129G6;0.71683!12239-129G7;0.000152178!12240-129G8;0.386131!10416-106C2;0.00011524!10801-110I9;0.478704!10766-110F1;0.0404805!10824-111C5;0.0816247!10825-111C6;0.0647292!10826-111C7;0.0594833!10454-106G4;0.0375355!10409-106B4;0.00857963!10638-108I8;0.0984067!10636-108I6;0.127492!10513-107D9;0.00164251!10420-106C6;0.00156089!10082-102B1;0.0242473!10014-101C5;0.118205!10070-101I7;0.0506458!10452-106G2;0.367724!10453-106G3;0.141313!10449-106F8;0.154207!10042-101F6;0.136205!10069-101I6;0.938055!10193-103E4;0.235948!10631-108I1;0.957852!10438-106E6;0.0120249!10488-107B2;0.0758475!10196-103E7;0.981989!10071-101I8;1.89682e-08!10071-101I8;0.257186!10041-101F5;0.12249!10451-106G1;0.831956!10450-106F9;0.005568!10604-108F1;0.000656721!10605-108F2;0.347558!10606-108F3;0.839842!10603-108E9;0.429168!10497-107C2;0.355661!10448-106F7;0.297301!10643-109A4;0.555209!10426-106D3;0.337577!10431-106D8;0.203542!10197-103E8;0.0174687!10443-106F2;0.00403427!10815-111B5;0.346158!10816-111B6;0.0905014!10817-111B7;0.0863556!10015-101C6;0.127611!10410-106B5;0.14197!10054-101G9;0.388471!10758-110E2;0.272424!10711-109H9;0.00156454!10040-101F4;0.00655703!10470-106I2;0.906575!10415-106C1;0.705998!10198-103E9;0.367334!10614-108G2;0.014585!10612-108F9;0.863993!10549-107H9;0.525259!10615-108G3;0.000555282!10487-107B1;0.244908!10433-106E1;0.648922!10688-109F4;0.350298!10444-106F3;0.349946!10444-106F3;0.0830254!10485-107A8;0.135522!10413-106B8;0.130708!10175-103C4;0.627339!10161-103A8;0.880888!12131-128D7;0.802869!10624-108H3;0.00841592!10712-109I1;0.085091!10205-103F7;0.0325664!10206-103F8;0.104905!10207-103F9;0.0505054!10050-101G5;0.0197852!10051-101G6;0.290795!10016-101C7;0.00576423!10046-101G1;0.0206036!10778-110G4;0.412449!10633-108I3;0.0327978!10818-111B8;0.00189504!10819-111B9;0.312234!10820-111C1;0.376321!10484-107A7;0.263564!10808-111A7;0.502278!10169-103B7;0.0577262!10153-102I9;0.923776!13425-144D5;0.83998!13433-144E4;0.000309258!13437-144E8;0.000247491!11904-125F5;0.000266719!11905-125F6;0.613265!10039-101F3;0.328975!10791-110H8;0.845702!10017-101C8;0.555813!10045-101F9;0.0137819!10509-107D5;0.502566!10839-111E2;0.0921828!10692-109F8;0.378068!10079-102A7;0.0708777!10078-102A6;0.0923871!10721-110A1;0.031587!10569-108B2;0.0124385!10570-108B3;0.00500383!10571-108B4;0.00508297!10647-109A8;0.380873!10752-110D5;0.00998814!10782-110G8;0.122808!10726-110A6;0.0104705!10018-101C9;0.0205197!10086-102B5;1.49908e-06!10182-103D2;0.556719!10165-103B3;0.839212!10499-107C4;0.642392!10408-106B3;0.310551!10019-101D1;0.690965!10068-101I5;0.178578!10075-102A3;0.0744743!10077-102A5;0.00179272!10727-110A7;0.79697!10775-110G1;0.114215!10412-106B7;0.0400802!12231-129F8;0.21888!12232-129F9;0.0117306!12233-129G1;0.00796245!12234-129G2;0.00273414!10414-106B9;0.0042873!10170-103B8;0.572282!10183-103D3;0.872818!10150-102I6;0.880694!10174-103C3;0.911419!10155-103A2;0.749201!10038-101F2;0.90701!10838-111E1;0.788111!10759-110E3;0.00854867!10514-107E1;0.000160685!10465-106H6;0.0389694!10691-109F7;0.466887!10843-111E6;0.0264509!10844-111E7;0.000446182!11747-123G1;0.00183786!11748-123G2;0.9777!11749-123G3;0.493771!11750-123G4;0.652243!11751-123G5;0.0378849!11840-124H4;0.0201795!11752-123G6;0.0047823!11753-123G7;0.000765968!11754-123G8;0.243609!11755-123G9;0.521394!11756-123H1;0.088386!11833-124G6;0.220207!11760-123H5;5.93217e-05!11836-124G9;0.441437!11758-123H3;0.990209!11835-124G8;0.106224!11762-123H7;0.0758643!11838-124H2;0.0901197!11757-123H2;0.1171!11759-123H4;0.0319771!11761-123H6;0.642738!11842-124H6;0.088141!11837-124H1;0.142552!10568-108B1;0.146063!13230-141I8;0.0169666!13231-141I9;0.111817!10696-109G3;0.0652487!10493-107B7;0.0262242!10494-107B8;0.19065!10850-111F4;0.305151!10851-111F5;0.700488!10852-111F6;0.47162!10853-111F7;0.0887805!10854-111F8;0.847543!10855-111F9;0.723584!10856-111G1;0.560149!10847-111F1;0.0761535!10846-111E9;0.109669!10848-111F2;0.985217!10845-111E8;0.49799!10857-111G2;3.96644e-06!10858-111G3;0.266242!10156-103A3;0.96853!11901-125F2;0.88471!11902-125F3;0.290129!11903-125F4;0.134067!10689-109F5;0.178486!10648-109A9;0.188941!10784-110H1;0.714777!10744-110C6;0.00342698!10772-110F7;0.338858!10474-106I6;0.0017352!10600-108E6;0.865082!10684-109E9;0.403365!12226-129F3;0.0233555!12227-129F4;0.156084!10508-107D4;0.406877!10539-107G8;0.120819!10607-108F4;0.632759!10555-107I6;0.00889135!10774-110F9;0.0494371!10637-108I7;0.0898044!10663-109C6;0.098076!10728-110A8;0.0540718!10729-110A9;0.00142926!10430-106D7;0.782944!10730-110B1;0.000913587!10813-111B3;0.333437!10812-111B2;0.745677!10037-101F1;0.0147246!10172-103C1;0.854286!10163-103B1;0.974817!10076-102A4;0.981013!10073-102A1;0.943146!10036-101E9;0.0524377!10195-103E6;0.744908!10277-104E7;0.93604!10434-106E2;0.221663!10550-107I1;0.544707!10545-107H5;0.0757159!10544-107H4;0.282288!10704-109H2;0.132061!10510-107D6;0.915067!10558-107I9;1.55192e-06!10020-101D2;0.189588!10732-110B3;0.00772712!10049-101G4;0.587916!10698-109G5;6.53264e-07!10437-106E5;0.632028!10417-106C3;0.692499!10035-101E8;0.470385!10171-103B9;0.84835!10157-103A4;0.762893!10034-101E7;0.929071!10072-101I9;0.828872!10199-103F1;0.0220578!10200-103F2;8.0955e-07!10697-109G4;0.0208737!10723-110A3;0.238581!10179-103C8;0.693889!10160-103A7;0.548!10180-103C9;0.786212!10162-103A9;0.00686158!10021-101D3;0.0189094!10840-111E3;0.00428559!10706-109H4;0.0327807!10033-101E6;0.0273945!10032-101E5;0.635963!10490-107B4;0.770233!10439-106E7;0.208259!10022-101D4;0.0791316!10176-103C5;0.003755!10469-106I1;0.651405!10067-101I4;0.65531!10411-106B6;0.674447!10471-106I3;0.00612644!10030-101E3;0.256917!10475-106I7;0.199161!10787-110H4;0.000818474!10477-106I9;0.164908!10695-109G2;7.76372e-06!11771-123I7;0.346214!11772-123I8;0.0097226!11773-123I9;0.0239214!10093-102C3;7.6632e-05!10442-106F1;5.49585e-07!10442-106F1;0.441287!10201-103F3;0.403981!10639-108I9;4.89028e-06!11843-124H7;0.549843!11841-124H5;0.635413!10693-109F9;0.00130696!10436-106E4;0.434658!10483-107A6;0.0309774!10282-104F3;0.00346587!10023-101D5;0.00210973!10066-101I3;0.00496331!10065-101I2;0.849661!10800-110I8;0.788964!10610-108F7;0.00566017!10841-111E4;0.187426!10541-107H1;0.118853!10842-111E5;0.0073123!10562-108A4;5.74377e-05!10024-101D6;0.29834!10064-101I1;0.0456415!10609-108F6;0.889296!10048-101G3;0.100859!10781-110G7;0.00100735!10181-103D1;0.0333691!10159-103A6;0.990493!10056-101H2;0.84713!10737-110B8;0.613856!10025-101D7;0.979736!10044-101F8;0.665234!10424-106D1;0.846817!10463-106H4;0.0616455!10616-108G4;0.973524!10486-107A9;0.825622!10062-101H8;0.0254805!10202-103F4;0.122869!10158-103A5;3.91143e-06!10441-106E9;0.509052!10031-101E4;2.14203e-08!10063-101H9;0.792697!10063-101H9;0.0979173!11763-123H8;0.17099!11765-123I1;0.165117!11768-123I4;0.040717!10807-111A6;0.0837182!10790-110H7;2.51315e-11!10798-110I6;2.17771e-07!10786-110H3;0.000670012!10591-108D6;0.0156125!10593-108D8;0.000842563!10590-108D5;0.0155382!10026-101D8;0.00043797!10096-102C6;0.395764!10168-103B6;0.892097!10154-103A1;0.6277!10209-103G2;0.967606!10061-101H7;0.138013!10027-101D9;0.919799!10043-101F7;0.118671!10783-110G9;0.129527!10028-101E1;0.00430111!10060-101H6;0.000670602!10203-103F5;0.0688234!10059-101H5;0.109829!10047-101G2;0.329437!10029-101E2;0.590357!10058-101H4;0.0636285!10418-106C4;0.180991!10492-107B6;0.0100387!10694-109G1;0.123989!10797-110I5;0.777386!10057-101H3;0.611981!10100-102D1;0.342512!10055-101H1;0.0125402!10204-103F6;0.740255!10191-103E2;0.0174491!10563-108A5;0.239208
|name=3-GCGTTTGAAT,CNhs12005,BestGuess:POU5F1.p2.SwissRegulon.nucfreq(0.706857732279924),T:673.0(53.37%),B:17006.1(36.66%),P:1e-32
|name=3-GCGTTTGAAT,CNhs12005,BestGuess:POU5F1.p2.SwissRegulon.nucfreq(0.706857732279924),T:673.0(53.37%),B:17006.1(36.66%),P:1e-32
|tomtom_result=INO2#MA0321.1;0;0.00430524;2.04929;1;9;GCGTTTGAAT;GCATGTGAA;+!INO4#MA0322.1;0;0.00448039;2.13267;1;9;GCGTTTGAAT;GCATGTGAA;+!ARR1#MA0274.1;-2;0.00665635;3.16842;1;8;GCGTTTGAAT;ACTTGAAT;+!HAP4#MA0315.1;2;0.0101411;4.82717;1;10;GCGTTTGAAT;TCGCCTCTGATTGGT;-!RME1#MA0370.1;1;0.013037;6.20564;1;9;GCGTTTGAAT;TTCCTTTGGA;-!HMG-I/Y#MA0045.1;6;0.0159787;7.60585;1;10;GCGTTTGAAT;GTTTTTCCATTTGTTG;-!pan#MA0237.1;-2;0.0176643;8.40819;1;8;GCGTTTGAAT;CTTTGATC;+
}}
}}

Latest revision as of 13:29, 7 September 2012

Full Name: 3-GCGTTTGAAT,CNhs12005,BestGuess:POU5F1.p2.SwissRegulon.nucfreq(0.706857732279924),T:673.0(53.37%),B:17006.1(36.66%),P:1e-32

Motif matrix
POACGT
164.60886.817480.52241.053
269.992454.94878.06869.992
393.54781.433401.10896.912
453.8484.12554.513480.522
546.43772.01170.665483.887
636.34253.16775.376508.115
743.07280.76479.84969.319
8450.9164.60855.859101.623
9488.59859.89748.45676.049
1075.37630.95881.433485.233

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
INO2#MA0321.100.004305242.0492919GCGTTTGAATGCATGTGAA+
INO4#MA0322.100.004480392.1326719GCGTTTGAATGCATGTGAA+
ARR1#MA0274.1-20.006656353.1684218GCGTTTGAATACTTGAAT+
HAP4#MA0315.120.01014114.82717110GCGTTTGAATTCGCCTCTGATTGGT-
RME1#MA0370.110.0130376.2056419GCGTTTGAATTTCCTTTGGA-
HMG-I/Y#MA0045.160.01597877.60585110GCGTTTGAATGTTTTTCCATTTGTTG-
pan#MA0237.1-20.01766438.4081918GCGTTTGAATCTTTGATC+
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