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MacroAPE 1083:NR1H4 f1: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;22.531512605042057;1.943277310924372;16.96428571428572;3.7289915966386578!2;20.588235294117663;0.9453781512605035;23.634453781512608;0.0!3;0...")
 
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597-108E3;0.737781!10717-109I6;0.435022!10455-106G5;0.749044!10534-107G3;0.549794!10429-106D6;0.397577!10464-106H5;0.381817!10827-111C8;0.273082!10789-110H6;0.841688!10828-111C9;0.791125!10788-110H5;0.857334!10792-110H9;0.994506!10765-110E9;0.852542!10829-111D1;0.544551!10830-111D2;0.867993!10831-111D3;0.297691!10832-111D4;0.835722!10833-111D5;0.574681!10764-110E8;0.793744!10770-110F5;0.870453!10399-106A3;0.332475!10400-106A4;0.738506!10405-106A9;0.633391!10834-111D6;0.872964!10835-111D7;0.986497!10836-111D8;0.96072!10837-111D9;0.653699!10699-109G6;0.565722!10802-111A1;0.604928!10796-110I4;0.522041!10010-101C1;0.314652!10810-111A9;0.0704223!10421-106C7;0.0800667!10708-109H6;0.892002!12235-129G3;0.0581709!12236-129G4;0.501987!12237-129G5;0.0399695!10167-103B5;0.229061!10151-102I7;0.0269683!10428-106D5;0.0584173!10795-110I3;0.790853!10805-111A4;0.960761!10052-101G7;0.81582!10189-103D9;0.465029!10589-108D4;0.517806!10425-106D2;0.889514!10427-106D4;0.126771!10702-109G9;0.565859!10432-106D9;0.415102!10496-107C1;0.893238!10718-109I7;0.710868!10011-101C2;0.490985!10053-101G8;0.589023!10686-109F2;0.632518!10084-102B3;0.179023!10012-101C3;0.158025!10085-102B4;0.051758!10482-107A5;0.0158326!10419-106C5;0.115767!10080-102A8;0.123045!10760-110E4;0.0320299!10709-109H7;0.174541!10710-109H8;0.31626!10703-109H1;0.100144!10719-109I8;0.000892725!10642-109A3;0.0235024!10177-103C6;0.191654!10164-103B2;0.097395!10173-103C2;0.0725519!10166-103B4;0.035337!10083-102B2;0.0183499!10188-103D8;0.0320263!10552-107I3;0.0503707!10553-107I4;0.994256!10013-101C4;0.078127!10536-107G5;0.801337!10618-108G6;0.569118!10423-106C9;0.796965!10785-110H2;0.719586!12238-129G6;0.921364!12239-129G7;0.519989!12240-129G8;0.135831!10416-106C2;0.356812!10801-110I9;0.626407!10766-110F1;0.776714!10824-111C5;0.535091!10825-111C6;0.350447!10826-111C7;0.353528!10454-106G4;0.372287!10409-106B4;0.742817!10638-108I8;0.660422!10636-108I6;0.467842!10513-107D9;0.859906!10420-106C6;0.4721!10082-102B1;0.965356!10014-101C5;0.0296244!10070-101I7;0.113934!10452-106G2;0.0552059!10453-106G3;0.347997!10449-106F8;0.208686!10042-101F6;0.174446!10069-101I6;0.110837!10193-103E4;0.000668791!10631-108I1;0.0735635!10438-106E6;0.281306!10488-107B2;0.121627!10196-103E7;0.95504!10071-101I8;0.643364!10071-101I8;0.214929!10041-101F5;0.023744!10451-106G1;0.71732!10450-106F9;0.492348!10604-108F1;0.103893!10605-108F2;0.298327!10606-108F3;0.396595!10603-108E9;0.381088!10497-107C2;0.906941!10448-106F7;0.853912!10643-109A4;0.0855889!10426-106D3;0.490739!10431-106D8;0.418022!10197-103E8;0.234724!10443-106F2;0.053213!10815-111B5;0.858528!10816-111B6;0.800835!10817-111B7;0.82762!10015-101C6;0.943604!10410-106B5;0.626639!10054-101G9;0.629344!10758-110E2;0.994355!10711-109H9;0.260879!10040-101F4;0.448135!10470-106I2;0.0460898!10415-106C1;0.296218!10198-103E9;0.658144!10614-108G2;0.1358!10612-108F9;0.565538!10549-107H9;0.813754!10615-108G3;0.0224218!10487-107B1;0.538091!10433-106E1;0.906648!10688-109F4;0.359587!10444-106F3;0.814242!10444-106F3;0.289579!10485-107A8;0.251972!10413-106B8;0.0341461!10175-103C4;0.604064!10161-103A8;0.230004!12131-128D7;0.12919!10624-108H3;0.216545!10712-109I1;0.593408!10205-103F7;0.674644!10206-103F8;0.0471185!10207-103F9;0.0717077!10050-101G5;0.00419514!10051-101G6;0.000179256!10016-101C7;0.00124528!10046-101G1;0.00480534!10778-110G4;0.0792418!10633-108I3;0.0362908!10818-111B8;0.215419!10819-111B9;0.15698!10820-111C1;0.196228!10484-107A7;0.174082!10808-111A7;0.574738!10169-103B7;0.747198!10153-102I9;0.0589099!13425-144D5;0.0755349!13433-144E4;0.801723!13437-144E8;0.692382!11904-125F5;0.772903!11905-125F6;0.167582!10039-101F3;0.0609177!10791-110H8;0.0395725!10017-101C8;0.0606405!10045-101F9;0.0400186!10509-107D5;0.330725!10839-111E2;0.251531!10692-109F8;0.837886!10079-102A7;0.48152!10078-102A6;0.0196752!10721-110A1;0.000137977!10569-108B2;0.719784!10570-108B3;0.758421!10571-108B4;0.714465!10647-109A8;0.82525!10752-110D5;0.909745!10782-110G8;0.129224!10726-110A6;0.449658!10018-101C9;0.95964!10086-102B5;1.65429e-06!10182-103D2;7.79052e-09!10165-103B3;0.150207!10499-107C4;0.117183!10408-106B3;0.680838!10019-101D1;0.802932!10068-101I5;0.31566!10075-102A3;0.571045!10077-102A5;0.257935!10727-110A7;0.133955!10775-110G1;0.26833!10412-106B7;0.11506!12231-129F8;0.251495!12232-129F9;0.0356909!12233-129G1;0.148481!12234-129G2;0.0976008!10414-106B9;0.113949!10170-103B8;0.33768!10183-103D3;0.0683785!10150-102I6;0.0831883!10174-103C3;0.0882899!10155-103A2;0.346242!10038-101F2;0.12408!10838-111E1;0.128851!10759-110E3;0.0359272!10514-107E1;0.00161698!10465-106H6;0.570907!10691-109F7;0.401224!10843-111E6;0.297356!10844-111E7;0.0049286!11747-123G1;0.00114214!11748-123G2;0.262728!11749-123G3;0.179163!11750-123G4;0.0639235!11751-123G5;0.818954!11840-124H4;0.482194!11752-123G6;0.171204!11753-123G7;0.195015!11754-123G8;0.285781!11755-123G9;0.185226!11756-123H1;0.067419!11833-124G6;0.279169!11760-123H5;0.0485871!11836-124G9;0.408408!11758-123H3;0.202015!11835-124G8;0.425704!11762-123H7;0.152483!11838-124H2;0.215504!11757-123H2;0.533247!11759-123H4;0.444968!11761-123H6;0.235907!11842-124H6;0.273811!11837-124H1;0.375719!10568-108B1;0.107204!13230-141I8;0.106086!13231-141I9;0.119606!10696-109G3;0.0568088!10493-107B7;0.671076!10494-107B8;0.941586!10850-111F4;0.465606!10851-111F5;0.16577!10852-111F6;0.447312!10853-111F7;0.658095!10854-111F8;0.197834!10855-111F9;0.231211!10856-111G1;0.0973414!10847-111F1;0.335301!10846-111E9;0.497629!10848-111F2;0.719623!10845-111E8;0.581808!10857-111G2;0.0677493!10858-111G3;0.677925!10156-103A3;0.153576!11901-125F2;0.0756811!11902-125F3;0.0485129!11903-125F4;0.0847204!10689-109F5;0.360744!10648-109A9;0.739672!10784-110H1;0.938423!10744-110C6;0.527605!10772-110F7;0.243651!10474-106I6;0.696358!10600-108E6;0.72818!10684-109E9;0.672636!12226-129F3;0.697708!12227-129F4;0.6859!10508-107D4;0.0293766!10539-107G8;0.103651!10607-108F4;0.254317!10555-107I6;0.099171!10774-110F9;0.204357!10637-108I7;0.499627!10663-109C6;0.0611701!10728-110A8;0.00895455!10729-110A9;0.00591023!10430-106D7;0.223526!10730-110B1;0.491199!10813-111B3;0.00949466!10812-111B2;0.662526!10037-101F1;0.316631!10172-103C1;0.0554014!10163-103B1;0.0637968!10076-102A4;0.0988983!10073-102A1;0.0719961!10036-101E9;0.0338157!10195-103E6;0.0599821!10277-104E7;0.0492216!10434-106E2;0.409609!10550-107I1;0.240988!10545-107H5;0.414349!10544-107H4;0.203696!10704-109H2;0.259871!10510-107D6;0.223551!10558-107I9;0.310727!10020-101D2;0.562812!10732-110B3;0.200007!10049-101G4;0.429116!10698-109G5;0.170307!10437-106E5;0.856527!10417-106C3;0.179459!10035-101E8;0.724027!10171-103B9;0.049006!10157-103A4;0.0665874!10034-101E7;0.089213!10072-101I9;0.0511709!10199-103F1;0.0378375!10200-103F2;0.177698!10697-109G4;0.0628958!10723-110A3;0.100683!10179-103C8;0.515207!10160-103A7;0.414997!10180-103C9;0.145284!10162-103A9;0.308853!10021-101D3;0.0482461!10840-111E3;0.523522!10706-109H4;0.525811!10033-101E6;0.57932!10032-101E5;0.0629104!10490-107B4;0.0531992!10439-106E7;0.858397!10022-101D4;0.194735!10176-103C5;0.998518!10469-106I1;0.0476619!10067-101I4;0.318254!10411-106B6;0.856285!10471-106I3;0.79489!10030-101E3;0.846227!10475-106I7;0.519336!10787-110H4;0.061318!10477-106I9;0.108733!10695-109G2;0.893996!11771-123I7;0.828437!11772-123I8;0.687183!11773-123I9;0.667707!10093-102C3;0.119868!10442-106F1;0.620331!10442-106F1;0.473499!10201-103F3;0.487334!10639-108I9;0.853042!11843-124H7;0.18626!11841-124H5;0.768504!10693-109F9;0.955706!10436-106E4;0.893947!10483-107A6;0.660595!10282-104F3;0.0799106!10023-101D5;0.000186205!10066-101I3;0.000745006!10065-101I2;0.00359346!10800-110I8;0.0945283!10610-108F7;0.0278838!10841-111E4;0.128677!10541-107H1;0.0233714!10842-111E5;0.233118!10562-108A4;0.106414!10024-101D6;0.102002!10064-101I1;0.217165!10609-108F6;0.0411017!10048-101G3;0.233186!10781-110G7;0.700475!10181-103D1;0.171025!10159-103A6;0.182322!10056-101H2;0.151656!10737-110B8;0.363139!10025-101D7;0.165927!10044-101F8;0.856041!10424-106D1;0.668863!10463-106H4;0.717642!10616-108G4;0.226691!10486-107A9;0.5792!10062-101H8;0.311925!10202-103F4;0.318984!10158-103A5;0.18035!10441-106E9;0.103147!10031-101E4;0.0164008!10063-101H9;0.0519869!10063-101H9;0.0238228!11763-123H8;0.523064!11765-123I1;0.0574166!11768-123I4;0.0145962!10807-111A6;0.0497714!10790-110H7;0.604299!10798-110I6;0.101282!10786-110H3;0.909902!10591-108D6;0.260923!10593-108D8;0.73628!10590-108D5;0.129781!10026-101D8;0.310885!10096-102C6;0.0020223!10168-103B6;0.0332351!10154-103A1;0.182799!10209-103G2;0.109209!10061-101H7;0.00386027!10027-101D9;0.13293!10043-101F7;0.00753057!10783-110G9;0.139155!10028-101E1;0.732072!10060-101H6;0.286266!10203-103F5;0.110146!10059-101H5;0.00345993!10047-101G2;0.000998139!10029-101E2;0.715902!10058-101H4;0.122355!10418-106C4;0.086257!10492-107B6;0.348144!10694-109G1;0.60301!10797-110I5;0.962149!10057-101H3;0.795494!10100-102D1;0.0482178!10055-101H1;0.588324!10204-103F6;0.810273!10191-103E2;0.802253!10563-108A5;0.133229
|name=NR1H4_f1
|name=NR1H4_f1
|tomtom_result=RXRA::VDR#MA0074.1;-1;0.000743747;0.354024;0.608103;13;AGGGTCAATGACCT;GGGTCAACGAGTTCA;+!NR4A2#MA0160.1;0;0.00181274;0.862866;0.608103;8;AGGGTCAATGACCT;AAGGTCAC;+!HNF4A#MA0114.1;-1;0.00191678;0.912385;0.608103;13;AGGGTCAATGACCT;AGGCCAAAGGTCA;+!RXR::RAR_DR5#MA0159.1;-1;0.00399239;1.90038;0.835608;13;AGGGTCAATGACCT;AGGTCATGGAGAGGTCA;+!ESR2#MA0258.1;1;0.00438981;2.08955;0.835608;14;AGGGTCAATGACCT;CAAGGTCACGGTGACCTG;+!usp#MA0016.1;0;0.00728798;3.46908;0.999747;10;AGGGTCAATGACCT;GGGGTCACGG;+!RORA_1#MA0071.1;3;0.0141702;6.74499;0.999747;7;AGGGTCAATGACCT;ATCAAGGTCA;+!NR2F1#MA0017.1;0;0.0143357;6.82381;0.999747;14;AGGGTCAATGACCT;AGGTTCAAAGGTCA;-!Pax2#MA0067.1;-2;0.0146416;6.96942;0.999747;8;AGGGTCAATGACCT;AGTCACGG;+!PPARG::RXRA#MA0065.1;3;0.0184375;8.77625;0.999747;14;AGGGTCAATGACCT;CTAGGGGTCAAAGGTCATCG;+!Sox17#MA0078.1;-3;0.0198187;9.43371;0.999747;9;AGGGTCAATGACCT;GACAATGAG;-!NRG1#MA0347.1;7;0.0208126;9.9068;0.999747;13;AGGGTCAATGACCT;CTAGATCAGGGTCCATCGCA;+!NR1H2::RXRA#MA0115.1;1;0.0209681;9.98083;0.999747;14;AGGGTCAATGACCT;AAAGGTCAAAGGTCAAC;+
}}
}}

Latest revision as of 13:39, 7 September 2012

Full Name: NR1H4_f1

Motif matrix
POACGT
122.5315126050420571.94327731092437216.964285714285723.7289915966386578
220.5882352941176630.945378151260503523.6344537815126080.0
30.00.945378151260503543.172268907563061.0504201680672292
41.05042016806722920.039.390756302521054.72689075630254
50.84033613445378242.8361344537815151.050420168067229240.44117647058826
60.945378151260503537.289915966386585.8823529411764811.0504201680672292
744.1176470588235860.01.05042016806722920.0
817.8571428571428588.6134453781512838.9285714285714299.768907563025225
91.99579831932773275.8823529411764817.14285714285715330.147058823529427
109.9789915966386411.050420168067229233.0882352941176951.0504201680672292
1127.4159663865546225.7773109243697513.78151260504201858.193277310924364
122.73109243697479438.445378151260520.94537815126050353.046218487394962
131.050420168067229240.126050420168110.94537815126050353.046218487394962
143.8865546218487445.0420168067226854.8319327731092731.4075630252101

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
RXRA::VDR#MA0074.1-10.0007437470.3540240.60810313AGGGTCAATGACCTGGGTCAACGAGTTCA+
NR4A2#MA0160.100.001812740.8628660.6081038AGGGTCAATGACCTAAGGTCAC+
HNF4A#MA0114.1-10.001916780.9123850.60810313AGGGTCAATGACCTAGGCCAAAGGTCA+
RXR::RAR_DR5#MA0159.1-10.003992391.900380.83560813AGGGTCAATGACCTAGGTCATGGAGAGGTCA+
ESR2#MA0258.110.004389812.089550.83560814AGGGTCAATGACCTCAAGGTCACGGTGACCTG+
usp#MA0016.100.007287983.469080.99974710AGGGTCAATGACCTGGGGTCACGG+
RORA_1#MA0071.130.01417026.744990.9997477AGGGTCAATGACCTATCAAGGTCA+
NR2F1#MA0017.100.01433576.823810.99974714AGGGTCAATGACCTAGGTTCAAAGGTCA-
Pax2#MA0067.1-20.01464166.969420.9997478AGGGTCAATGACCTAGTCACGG+
PPARG::RXRA#MA0065.130.01843758.776250.99974714AGGGTCAATGACCTCTAGGGGTCAAAGGTCATCG+
Sox17#MA0078.1-30.01981879.433710.9997479AGGGTCAATGACCTGACAATGAG-
NRG1#MA0347.170.02081269.90680.99974713AGGGTCAATGACCTCTAGATCAGGGTCCATCGCA+
NR1H2::RXRA#MA0115.110.02096819.980830.99974714AGGGTCAATGACCTAAAGGTCAAAGGTCAAC+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:NR1H4_f1&oldid=2134081"