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MacroAPE 1083:10-ATCGATTG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;2245.6;230.174;117.894;213.332!2;131.929;190.876;378.945;2105.25!3;272.279;2127.706;221.753;185.262!4;129.122;348.068;2037.882;291.928!5;157...")
 
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1-141I9;0.0880307!10696-109G3;0.0714655!10493-107B7;0.445065!10494-107B8;0.681887!10850-111F4;0.235228!10851-111F5;0.277327!10852-111F6;0.813077!10853-111F7;0.44807!10854-111F8;0.351649!10855-111F9;0.99694!10856-111G1;0.785964!10847-111F1;0.846243!10846-111E9;0.636904!10848-111F2;0.942156!10845-111E8;0.427436!10857-111G2;0.679615!10858-111G3;0.139132!10156-103A3;0.693494!11901-125F2;0.903045!11902-125F3;0.881721!11903-125F4;0.87097!10689-109F5;0.70065!10648-109A9;0.835464!10784-110H1;0.796118!10744-110C6;0.40007!10772-110F7;0.716488!10474-106I6;0.267755!10600-108E6;0.846932!10684-109E9;0.620367!12226-129F3;0.296825!12227-129F4;0.0127584!10508-107D4;0.805454!10539-107G8;0.635178!10607-108F4;0.724321!10555-107I6;0.0239365!10774-110F9;0.874922!10637-108I7;0.066653!10663-109C6;0.148559!10728-110A8;0.237917!10729-110A9;0.476306!10430-106D7;0.0112628!10730-110B1;0.923473!10813-111B3;0.45508!10812-111B2;0.00280011!10037-101F1;0.442849!10172-103C1;0.859447!10163-103B1;0.614395!10076-102A4;0.864868!10073-102A1;0.955535!10036-101E9;0.594566!10195-103E6;0.916312!10277-104E7;0.965902!10434-106E2;0.500106!10550-107I1;0.0359309!10545-107H5;0.0705252!10544-107H4;0.0653642!10704-109H2;0.227022!10510-107D6;0.200868!10558-107I9;0.521181!10020-101D2;0.421939!10732-110B3;0.246482!10049-101G4;0.620278!10698-109G5;0.83304!10437-106E5;0.739923!10417-106C3;0.466871!10035-101E8;0.323025!10171-103B9;0.863001!10157-103A4;0.738187!10034-101E7;0.830691!10072-101I9;0.822301!10199-103F1;0.753163!10200-103F2;0.5854!10697-109G4;0.314822!10723-110A3;0.48691!10179-103C8;0.710384!10160-103A7;0.346708!10180-103C9;0.606709!10162-103A9;0.191347!10021-101D3;0.312659!10840-111E3;0.353589!10706-109H4;0.651671!10033-101E6;0.106982!10032-101E5;0.553762!10490-107B4;0.92941!10439-106E7;0.338447!10022-101D4;0.337994!10176-103C5;0.311642!10469-106I1;0.854038!10067-101I4;0.291237!10411-106B6;0.921174!10471-106I3;0.355915!10030-101E3;0.940036!10475-106I7;0.482602!10787-110H4;0.505699!10477-106I9;0.318118!10695-109G2;0.496912!11771-123I7;0.0853887!11772-123I8;0.0254976!11773-123I9;0.263427!10093-102C3;0.611333!10442-106F1;0.97215!10442-106F1;0.213968!10201-103F3;0.305253!10639-108I9;0.0872407!11843-124H7;0.142272!11841-124H5;0.772601!10693-109F9;0.574212!10436-106E4;0.210371!10483-107A6;0.185416!10282-104F3;0.355252!10023-101D5;0.061961!10066-101I3;0.151132!10065-101I2;0.112358!10800-110I8;0.441565!10610-108F7;0.309193!10841-111E4;0.858614!10541-107H1;0.314107!10842-111E5;0.127221!10562-108A4;0.472068!10024-101D6;0.524247!10064-101I1;0.877388!10609-108F6;0.488655!10048-101G3;0.440606!10781-110G7;0.385066!10181-103D1;0.549582!10159-103A6;0.797754!10056-101H2;0.948222!10737-110B8;0.712326!10025-101D7;0.0412046!10044-101F8;0.237053!10424-106D1;0.219204!10463-106H4;0.548067!10616-108G4;0.401855!10486-107A9;0.192157!10062-101H8;0.465169!10202-103F4;0.284484!10158-103A5;0.628923!10441-106E9;0.826649!10031-101E4;0.31897!10063-101H9;0.981865!10063-101H9;0.972382!11763-123H8;0.423486!11765-123I1;0.163178!11768-123I4;0.333088!10807-111A6;0.180046!10790-110H7;0.196573!10798-110I6;0.357146!10786-110H3;0.0951348!10591-108D6;0.226545!10593-108D8;0.142645!10590-108D5;0.195959!10026-101D8;0.528998!10096-102C6;0.0989492!10168-103B6;0.202156!10154-103A1;0.848134!10209-103G2;0.854979!10061-101H7;0.257301!10027-101D9;0.356425!10043-101F7;0.755681!10783-110G9;0.277611!10028-101E1;0.933419!10060-101H6;0.406368!10203-103F5;0.544693!10059-101H5;0.257379!10047-101G2;0.318987!10029-101E2;0.403686!10058-101H4;0.480869!10418-106C4;0.214214!10492-107B6;0.00761314!10694-109G1;0.254451!10797-110I5;0.196198!10057-101H3;0.17408!10100-102D1;0.28124!10055-101H1;0.49164!10204-103F6;0.853541!10191-103E2;0.419805!10563-108A5;0.234448
|name=10-ATCGATTG,BestGuess:HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)(0.719249319691647),T:2807.0(39.90%),B:13696.2(32.89%),P:1e-29
|name=10-ATCGATTG,BestGuess:HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)(0.719249319691647),T:2807.0(39.90%),B:13696.2(32.89%),P:1e-29
|tomtom_result=PBX1#MA0070.1;0;0.0101764;4.84399;1;8;ATCGATTG;TTTGATTGATGG;-!GATA3#MA0037.1;-2;0.0150117;7.14559;1;6;ATCGATTG;AGATAG;+
}}
}}

Latest revision as of 13:46, 7 September 2012

Full Name: 10-ATCGATTG,BestGuess:HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)(0.719249319691647),T:2807.0(39.90%),B:13696.2(32.89%),P:1e-29

Motif matrix
POACGT
12245.6230.174117.894213.332
2131.929190.876378.9452105.25
3272.2792127.706221.753185.262
4129.122348.0682037.882291.928
51574.727384.559423.857423.857
630.877202.104322.8052251.214
7376.138314.3842.8072113.671
850.526247.0162385.95123.508

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
PBX1#MA0070.100.01017644.8439918ATCGATTGTTTGATTGATGG-
GATA3#MA0037.1-20.01501177.1455916ATCGATTGAGATAG+
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